A fast algorithm for the exact likelihood of stationary and partially nonstationary vector autoregressive-moving average processes

An expression for the likelihood function of a stationary vectorautoregressive-moving average process is developed. The expressionis very efficient numerically and applies to any stationarybut not necessarily invertible model. In particular, when themultivariate process is autoregressive, the exact likelihoodcan be evaluated with a small number of operations dependingon the order of the autoregressive operator and the processdimension, but not on the size of the observed series. The expressionalso provides an efficient method for the evaluation of theexact likelihood of a partially nonstationary vector autoregressive-movingaverage process, for which the determinant of the autoregressiveoperator has at least one unit root and the remaining rootsare outside the unit circle. This method does not require differencingthe series, so that complications caused by over-differencingthe series, such as noninvertibility and parameter identifiabilityproblems, are avoided. The results for autoregressive modelsare also applied to testing the stationarity and invertibilityof any autoregressive-moving average model with given parametervalues.     

In vivo noninvasive measurement of spatially resolved corneal elasticity in human eyes using Lamb wave optical coherence elastography

Current elastography techniques are limited in application to accurately assess spatially resolved corneal elasticity in vivo for human eyes. The air‐puff optical coherence elastography (OCE) with an eye motion artifacts correction algorithm is developed to distinguish the in vivo cornea vibration from the eye motion and visualize the Lamb wave propagation clearly in healthy subjects. Based on the Lamb wave model, the phase velocity dispersion curve in the high‐frequency is calculated to obtain spatially resolved corneal elasticity accurately with high repeatability. It is found that the corneal elasticity has regional variations and is correlated with intraocular pressure, which suggests that the method has the potential to provide noninvasive measurement of spatially resolved corneal elasticity in clinical practice.     

A role for alternative end-joining factors in homologous recombination and genome editing in Chinese hamster ovary cells

CRISPR technologies greatly foster genome editing in mammalian cells through site-directed DNA double strand breaks (DSBs). However, precise editing outcomes, as mediated by homologous recombination (HR) repair, are typically infrequent and outnumbered by undesired genome alterations. By using knockdown and overexpression studies in Chinese hamster ovary (CHO) cells as well as characterizing repaired DNA junctions, we found that efficient HR-mediated genome editing depends on alternative end-joining (alt-EJ) DNA repair activities, a family of incompletely characterized DNA repair pathways traditionally considered to oppose HR. This dependency was influenced by the CRISPR nuclease type and the DSB-to-mutation distance, but not by the DNA sequence surrounding the DSBs or reporter cell line. We also identified elevated Mre11 and Pari, and low Rad51 expression levels as the most rate-limiting factors for HR in CHO cells. Counteracting these three bottlenecks improved precise genome editing by up to 75%. Altogether, our study provides novel insights into the complex interplay of alt-EJ and HR repair pathways, highlighting their relevance for developing improved genome editing strategies.     

Generating a "Humanized" Drosophila S2 Cell Line Sensitive to Pharmacological Inhibition of Kinesin-5

Kinetochores are large protein-based structures that assemble on centromeres during cell division and link chromosomes to spindle microtubules. Proper distribution of the genetic material requires that sister kinetochores on every chromosome become bioriented by attaching to microtubules from opposite spindle poles before progressing into anaphase. However, erroneous, non-bioriented attachment states are common and cellular pathways exist to both detect and correct such attachments during cell division. The process by which improper kinetochore-microtubule interactions are destabilized is referred to as error correction. To study error correction in living cells, incorrect attachments are purposely generated via chemical inhibition of kinesin-5 motor, which leads to monopolar spindle assembly, and the transition from mal-orientation to biorientation is observed following drug washout. The large number of chromosomes in many model tissue culture cell types poses a challenge in observing individual error correction events. Drosophila S2 cells are better subjects for such studies as they possess as few as 4 pairs of chromosomes. However, small molecule kinesin-5 inhibitors are ineffective against Drosophila kinesin-5 (Klp61F). Here we describe how to build a Drosophila cell line that effectively replaces Klp61F with human kinesin-5, which renders the cells sensitive to pharmacological inhibition of the motor and suitable for use in the cell-based error correction assay.     

Scanning electron microscopy of the electric organs of Electrophorus electricus L

Summary The surfaces of the organs of Sachs and Hunter of Electrophorus electricus L. were examined by scanning electron microscopy. Special attention was directed to morphological details of the electrocyte to provide a better understanding of its anterior and posterior faces. Some aspects of the microanatomy of these organs, which differ markedly from those of the main electric organ, provide new information on the structure as revealed previously by light and transmission electron microscopy. The relief, mainly expressed by papillae, is related to the actual membrane area, which is important for calculations of specific resistance and conductance. Information is also presented on the general organization of the tissue, in particular the distribution of the connective elements and external configuration of synaptic terminals. Shrinkage in preparation of tissue was evaluated and correction made whenever necessary. Correction factors for actual membrane area were calculated for anterior and posterior faces of electrocytes from both organs.     

Accurate mean comparisons for paired samples with missing data: An application to a smoking‐cessation trial

In this paper, we consider mean comparisons for paired samples in which a certain portion of the observations are missing. This type of data commonly arises in medical researches where the outcomes are assessed at two time points after the application of treatments. New methods for statistical inference are proposed by making finiteness correction based on asymptotic expansions of some intuitive statistics. The comparison methods naturally extend to the two‐group case after some suitable manipulations. Simulation study is carried out to demonstrate the numerical accuracy of the proposed methods. Data from a smoking‐cessation trial are used to illustrate the application of the methods.