Otoacoustic emissions,auditory evoked potentials and self-reported gender in people affected by disorders of sex development (DSD)

Both otoacoustic emissions (OAEs) and auditory evoked potentials (AEPs) are sexually dimorphic, and both are believed to be influenced by prenatal androgen exposure. OAEs and AEPs were collected from people affected by 1 of 3 categories of disorders of sex development (DSD) — (1) women with complete androgen insensitivity syndrome (CAIS); (2) women with congenital adrenal hyperplasia (CAH); and (3) individuals with 46,XY DSD including prenatal androgen exposure who developed a male gender despite initial rearing as females (men with DSD). Gender identity (GI) and role (GR) were measured both retrospectively and at the time of study participation, using standardized questionnaires. The main objective of this study was to determine if patterns of OAEs and AEPs correlate with gender in people affected by DSD and in controls. A second objective was to assess if OAE and AEP patterns differed according to degrees of prenatal androgen exposure across groups. Control males, men with DSD, and women with CAH produced fewer spontaneous OAEs (SOAEs) – the male-typical pattern – than control females and women with CAIS. Additionally, the number of SOAEs produced correlated with gender development across all groups tested. Although some sex differences in AEPs were observed between control males and females, AEP measures did not correlate with gender development, nor did they vary according to degrees of prenatal androgen exposure, among people with DSD. Thus, OAEs, but not AEPs, may prove useful as bioassays for assessing early brain exposure to androgens and predicting gender development in people with DSD.     

Src regulates the activity of SIRT2

SIRT2 is a mammalian member of the Sirtuin family of NAD⁺-dependent protein deacetylases. The tyrosine kinase Src is involved in a variety of cellular signaling pathways, leading to the induction of DNA synthesis, cell proliferation, and cytoskeletal reorganization. The function of SIRT2 is modulated by post-translational modifications; however, the precise molecular signaling mechanism of SIRT2 through interactions with c-Src has not yet been established. In this study, we investigated the potential regulation of SIRT2 function by c-Src. We found that the protein levels of SIRT2 were decreased by c-Src, and subsequently rescued by the addition of a Src specific inhibitor, SU6656, or by siRNA-mediated knockdown of c-Src. The c-Src interacts with and phosphorylates SIRT2 at Tyr104. c-Src also showed the ability to regulate the deacetylation activity of SIRT2. Investigation on the phosphorylation of SIRT2 suggested that this was the method of c-Src-mediated SIRT2 regulation.     

食物单宁和皂苷对小白鼠食物选择的影响

通过饲喂自然种子及人工饲料块等单宁和皂苷含量不同的食物,研究了食物中单宁或皂苷水平对小白鼠(Mus musculus domesticus)食物选择的影响,以及取食经历在其食物选择中的作用。结果表明,(1)无论有无取食经历,小白鼠均优先取食次生物质含量低的锥栗(Castanea henryi)或花生(Arachis hypogaea),而很少取食单宁含量高的栓皮栎(Quercus variabilis)或皂苷含量高的油茶(Camelia oleifera);(2)小白鼠的取食经历能增强其对种子中单宁或皂苷水平的识别,从而减少其摄入;(3)小白鼠的食物摄入量随单宁或皂苷含量的增加而显著降低。本研究说明单宁或皂苷均可显著影响动物的食物选择,且取食经历能增强动物对食物的识别能力。     

Cytotype diversity and genome size variation in eastern Asian polyploid Cardamine (Brassicaceae) species

Background and Aims

Intraspecific ploidy-level variation is an important aspect of a species'' genetic make-up, which may lend insight into its evolutionary history and future potential. The present study explores this phenomenon in a group of eastern Asian Cardamine species.

Methods

Plant material was sampled from 59 localities in Japan and Korea, which were used in karyological (chromosome counting) and flow cytometric analyses. The absolute nuclear DNA content (in pg) was measured using propidium iodide and the relative nuclear DNA content (in arbitrary units) was measured using 4,6-diamidino-2-phenylindole fluorochrome.

Key Results

Substantial cytotype diversity was found, with strikingly different distribution patterns between the species. Two cytotypes were found in C. torrentis sensu lato (4x and 8x, in C. valida and C. torrentis sensu stricto, respectively), which displays a north–south geographical pattern in Japan. Hypotheses regarding their origin and colonization history in the Japanese archipelago are discussed. In Korean C. amaraeiformis, only tetraploids were found, and these populations may in fact belong to C. valida. C. yezoensis was found to harbour as many as six cytotypes in Japan, ranging from hexa- to dodecaploids. Ploidy levels do not show any obvious geographical pattern; populations with mixed ploidy levels, containing two to four cytotypes, are frequently observed throughout the range. C. schinziana, an endemic of Hokkaido, has hexa- and octoploid populations. Previous chromosome records are also revised, showing that they are largely based on misidentified material or misinterpreted names.

Conclusions

Sampling of multiple populations and utilization of the efficient flow cytometric approach allowed the detection of large-scale variation in ploidy levels and genome size variation attributable to aneuploidy. These data will be essential in further phylogenetic and evolutionary studies.     

Using stable isotope biogeochemistry to study marine mammal ecology

Stable isotope analysis (SIA) has emerged as a common tool in ecology and has proven especially useful in the study of animal diet, habitat use, movement, and physiology. SIA has been vigorously applied to the study of marine mammals, because most species live in habitats or undergo large migrations/movements that make them difficult to observe. Our review supplies a complete list of published SIA contributions to marine mammal science and highlights informative case examples in four general research areas: (1) physiology and fractionation, (2) foraging ecology and habitat use, (3) ecotoxicology, and (4) historic ecology and paleoecology. We also provide a condensed background of isotopic nomenclature, highlight several physiological considerations important for accurate interpretation of isotopic data, and identify research areas ripe for future growth. Because it is impossible to conduct controlled laboratory experiments on most marine mammal species, future studies in marine mammal ecology must draw on isotopic data collected from other organisms and be cognizant of key assumptions often made in the application of SIA to the study of animal ecology. The review is designed to be accessible to all audiences, from students unfamiliar with SIA to those who have utilized it in published studies.     

Population dynamics of Anarsia lineatella in relation to crop damage and the development of economic injury levels

Developing a relationship between pest abundance and damage to crops is essential for the calculation of economic injury levels (EILs) and to anticipate informed management decisions. Field studies were conducted for three successive years (2005, 2006 and 2007) in peach orchards of northern Greece to examine relationships between densities of Anarsia lineatella Zeller (Lepidoptera: Gelechiidae) populations and peach (Prunus persica) yields. According to a linear regression model, the increase in moth’s densities during the 1st flight resulted in a significant reduction in yield (y = 0.436x + 10.22, R² = 0.635, d.f. = 2,11, P < 0.05). Correlation of male moths captured during the 2nd flight and observed yield loss was significant (y = 0.5231x + 17.204, R² = 0.792, d.f. = 2,11, P < 0.05). Moreover, according to a linear model by counting the number of shoot strikes, during the first observation period, a forthcoming yield loss can be estimated (y = 27.389x?6.304, R² = 0.711, d.f. 2,11, F = 22.09, P < 0.05). A significant relationship was observed between the numbers of the 2nd generation larvae and yield loss (y = 163x, R² = 0.890). Regression coefficient of the above function represents yield loss per pest and was applied in the calculation of EIL’s and fixed Economic thresholds (ET’s). In addition, parameter of the price commodity was estimated for 2009 by applying stochastic autoregressive moving average model. By integrating above information, EIL and fixed ET estimated as 112 larvae and 84 larvae per sampling unit for a mean value (€4/0.1 ha) of cost management tactics and a 90% efficacy.     

Proteomics and systems biology to tackle biological complexity: Yeast as a case study

In this note we discuss how, by using budding yeast as model organism (as has been done in the past for biochemical, genetics and genomic studies), the integration of "omics" sciences and more specifically of proteomics with systems biology offers a very profitable approach to elucidating regulatory circuits of complex biological functions.     

Bayesian Methods for Examining Hardy–Weinberg Equilibrium

Summary .  Testing for Hardy–Weinberg equilibrium is ubiquitous and has traditionally been carried out via frequentist approaches. However, the discreteness of the sample space means that uniformity of  p -values under the null cannot be assumed, with enumeration of all possible counts, conditional on the minor allele count, offering a computationally expensive way of  p -value calibration. In addition, the interpretation of the subsequent  p -values, and choice of significance threshold depends critically on sample size, because equilibrium will always be rejected at conventional levels with large sample sizes. We argue for a Bayesian approach using both Bayes factors, and the examination of posterior distributions. We describe simple conjugate approaches, and methods based on importance sampling Monte Carlo. The former are convenient because they yield closed-form expressions for Bayes factors, which allow their application to a large number of single nucleotide polymorphisms (SNPs), in particular in genome-wide contexts. We also describe straightforward direct sampling methods for examining posterior distributions of parameters of interest. For large numbers of alleles at a locus we resort to Markov chain Monte Carlo. We discuss a number of possibilities for prior specification, and apply the suggested methods to a number of real datasets.