Noise-induced neural impulses

The firing pattern of neural pulses often show the following features: the shapes of individual pulses are nearly identical and frequency independent; the firing frequency can vary over a broad range; the time period between pulses shows a stochastic scatter. This behaviour cannot be understood on the basis of a deterministic non-linear dynamic process, e.g. the Bonhoeffer-van der Pol model. We demonstrate in this paper that a noise term added to the Bonhoeffer-van der Pol model can reproduce the firing patterns of neurons very well. For this purpose we have considered the Fokker-Planck equation corresponding to the stochastic Bonhoeffer-van der Pol model. This equation has been solved by a new Monte Carlo algorithm. We demonstrate that the ensuing distribution functions represent only the global characteristics of the underlying force field: lines of zero slope which attract nearby trajectories prove to be the regions of phase space where the distributions concentrate their amplitude. Since there are two such lines the distributions are bimodal representing repeated fluctuations between two lines of zero slope. Even in cases where the deterministic Bonhoeffer-van der Pol model does not show limit cycle behaviour the stochastic system produces a limit cycle. This cycle can be identified with the firing of neural pulses.     

Sensory projections to the nucleus basalis prosencephali of the pigeon

Summary The afferent pathways to the nucleus basalis prosencephali of the pigeon were studied by use of the horseradish peroxidase (HRP) technique. It was confirmed that this nucleus receives a direct pathway from the nucleus sensorius principalis nervi trigemini and that, as in the starling, it receives a direct input from the nucleus lemnisci lateralis, pars ventralis, an auditory relay. Totally novel is the finding that the nucleus basalis prosencephali is the target of a direct pathway originating in the medullary nucleus vestibularis superior. All three pathways bypass the thalamus. From within the telencephalon the nucleus basalis prosencephali also receives fibres from the tuberculum olfactorium and the peri-ectostriatal belt, suggestive of olfactory and visual input. Marked cell bodies were also found in the neostriatum frontolaterale. It is assumed that these arose from HRP uptake by axons of the tractus fronto-archistriatalis that course through the nucleus basalis prosencephali to the anterodorsal archistriatum. Marked fibres and bouton-like formations were observed in the latter structure. The afferents to the nucleus basalis prosencephali are discussed in conjunction with the probable role of the nucleus as a sensorimotor coordinator of the pecking/feeding behaviour of the pigeon.     

Depth distribution of Campostoma grazing scars in an Ozark stream

Synopsis Campostoma spp., widespread and abundant herbivorous minnows of eastern North America, produce distinctive grazing scars when feeding on algae attached to natural substrates in streams. These scars are particularly prominent upon the low growth forms of blue-green algae that dominate the attached algal flora of many upland streams. In one stream pool in the Ozark uplands of Oklahoma, numbers and sizes of grazing scars coincided with numbers and sizes of individual Campostoma that occurred across a depth gradient, demonstrating that the information contained in the scars can provide quantification of microhabitat use and grazing intensity of these important herbivores. The results also support the hypothesis that in environments free of aquatic predators, larger fish use deeper parts of available stream habitats, particularly if threats from terrestrial or avian predators exist.     

Seasonal and size-related changes in the food of the short-finned eel,Anguilla australis in Lake Ellesmere,Canterbury, New Zealand

Synopsis An approximately monthly sampling programme in Lake Ellesmere, Canterbury, New Zealand, from January 1974 to April 1976 yielded 487 eels. The stomachs were fixed in 10% neutralised formalin and the contents examined. Preliminary analysis indicated that the mollusc Potamopyrgus antipodarum, the isopod Austridotea annectens, the mysid Tenagomysis chiltoni, the amphipod Paracalliope fluviatilis, the midge larva Chironomus zealandicus and the teleosts Retropinna retropinna, Galaxias maculatus and Gobiomorphus cotidianus together made up the bulk of the diet. The pre-ingested dry weight (i.e. the reconstructed weight) of the most important of these prey species was obtained by relating the length of a digestion resistant part to actual dry weight in field collected specimens. Regression equations for this relationship in each season enabled the reconstructed dry weight of each stomach item to be calculated. In some instances reconstructed weight was less than the actual digested dry weight of the prey specimen. In every case the larger value was used. This method is referred to as Combination Dry Weight (CDW) and is believed to be new. These data, used in conjunction with the energy content of the species concerned, enabled the caloric dietary contribution of each prey species to be determined. Comparison of relative contribution to eel diet between CDW and energy values calculated from CDW and bomb calorimetry revealed large differences. Marked variations in diet between ⩽40 cm, 40.1–50 cm, and>50.1 cm size classes were also shown. Eels ≤40 cm feed primarily on invertebrates and become progressively more piscivorous as they grow. Eels >50.1 cm are almost entirely piscivorous. Seasonal differences in diet also exist within each size class examined.     

An experimental removal of a territorial pomacentrid: effects on the occurrence and behavior of competitors

Synopsis Stegastes fasciolatus is the most common territorial damselfish in the shallow waters of Hawaii. Territorial defense was observed against other herbivorous fishes, especially acanthorids, scarids and one omnivorous chaetodontid. One acanthurid,Acanthurus nigrofuscus was found to differ in abundance and social behavior in areas whereS. fasciolatus was present, compared to areas where it was absent. The chaetodontid,Chaetodon quadrimaculatus was sheltered during the day in areas where the pomacentrid was abundant, apparently feeding at night. In other areas it fed during the day and at night, depending on the phase of the moon.S. fasciolatus were then experimentally removed from one study site, to test whether the differences in abundance and behavior of the other species were due to the presence of the damselfish. There was a significant increase in numbers of the surgeonfishAcanthurus nigrofuscus in the removal area, as well as changes in social behavior from schooling to defense of small territories. The butterflyfish,C. quadrimaculatus, was observed to forage during the day in the removal area. There were no significant changes in the control sites. The presence of the interspecifically territorial damselfish,S. fasciolatus, thus appears to be an important determinant of the behavior of these potential food competitors.     

Foraging site use and interspecific competition between bluegills and golden shiners

Synopsis Laboratory experiments examined the foraging performances of a dietary generalist, bluegill,Lepomis macrochirus, and a dietary specialist, golden shiner,Notemigonus crysoleucas, as they fed from devices simulating four foraging sites (bottom substrate, water column, submerged macrophytes, and water surface). Fishes foraged in monospecific and mixed-species groups of two and four individuals. For monospecific groups, foraging rates of bluegills did not differ among the four sites, but golden shiners had significantly higher rates on bottom and midwater sites than on plant and surface sites. The size of monospecific groups did not affect foraging rates of either species. In mixed-species trials, bluegills removed more food items than golden shiners from plant and surface sites in two- and four-fish groups and from bottom sites in two-fish groups. Bluegills' foraging performances improved with experience, golden shiners' performances did not. Experimental results are discussed with respect to interactions between bluegills and golden shiners in natural assemblages.     

Protein folding kinetics by combined use of rapid mixing techniques and NMR observation of individual amide protons

A method to be used for experimental studies of protein folding introduced by Schmid and Baldwin (J. Mol. Biol. 135: 199-215, 1979), which is based on the competition between amide hydrogen exchange and protein refolding, was extended by using rapid mixing techniques and 1H NMR to provide site-resolved kinetic information on the early phases of protein structure acquisition. In this method, a protonated solution of the unfolded protein is rapidly mixed with a deuterated buffer solution at conditions assuring protein refolding in the mixture. This simultaneously initiates the exchange of unprotected amide protons with solvent deuterium and the refolding of protein segments which can protect amide groups from further exchange. After variable reaction times the amide proton exchange is quenched while folding to the native form continues to completion. By using 1H NMR, the extent of exchange at individual amide sites is then measured in the refolded protein. Competition experiments at variable reaction times or variable pH indicate the time at which each amide group is protected in the refolding process. This technique was applied to the basic pancreatic trypsin inhibitor, for which sequence-specific assignments of the amide proton NMR lines had previously been obtained. For eight individual amide protons located in the beta-sheet and the C-terminal alpha-helix of this protein, apparent refolding rates in the range from 15 s-1 to 60 s-1 were observed. These rates are on the time scale of the fast folding phase observed with optical probes.     

True grit: A microwear experiment

Recently we noted the effects of experimental diets on microscopic dental wear in the American opossum and concluded that it might prove difficult to distinguish the microwear produced by an insectivorous diet from that produced by some kinds of herbivorous ones. We also noted that wear caused by gritty diets and those containing plant opal, although they might be confused with one another, are easily distinguished from other sorts of dietary wear. Our conclusions have been challenged on the basis that possibly we did not allow sufficient time in the experiments for diagnostic wear patterns to emerge. Additional data reported here show that this is not so. Even in our n “control” animals, fed a relatively soft unabrasive diet, enough time elapsed to produce significant dental wear. A new technique is described which for the first time allows the study of changing patterns of microscopic wear in a living animal over a period of time, thus allowing each animal to serve as its own control. A solution containing a broad-spectrum proteolytic enzyme when applied to the teeth of an anesthetized animal removes the proteinaceous coat (pellicle) which will otherwise obscure wear scratches. Precision dental impressions can then be made which reveal the details of the pattern of microwear on the teeth.     

Ion-specific diffusion rates through transmembrane protein channels. A molecular dynamics study

The migration of different alkali metal cations through a transmembrane model channel is simulated by means of the molecular dynamics technique. The parameters of the model are chosen in close relation to the gramicidin A channel. Coulomb- and van der Waals-type potentials between the ions and flexible carbonyl groups of the pore-forming molecule are used to describe the ion channel interaction. The diffusion properties of the ions are obtained from three-dimensional trajectory calculations. The diffusion rates for the different ions Li+, Na+, K+ and Rb+ are affected not only by the mass of the particles but also very strongly by their size. The latter effect is more pronounced for rigid channels, i.e., for binding vibrational frequencies of the CO groups with v greater than 400 cm-1. In this range the selectivity sequence for the diffusion rates is the inverse of that expected from normal rate theory but agrees with that found in experiments for gramicidin A.     

Fertility interactions in Drosophila: Theoretical model and experimental tests

The results of 11 experiments with Drosophila species show that fertility is not a reducible property: the fertility of a mating pair cannot be predicted from the average fertility of the two genotypes involved. We propose a model of fertility selection that does not assume additivity (or multiplicativity) but assumes random mating and that the genotypic frequencies are in Hardy-Weinberg equilibrium. Numerical simulations show that removal of the assumption of Hardy-Weinberg frequencies does not significantly change the equilibrium frequencies predicted by the model.