水质微生物学检验实验模块的教学探索与实践

我校采用模块化教学形式开展水质微生物学检验实验教学。该模块由菌落总数测定、总大肠菌群测定及生理生化反应测试以及大肠菌群的血清学测试3个单元实验组成。实验内容以国家标准《生活饮用水标准检验方法——微生物指标(GB/T 5750.12-2006)》规定的程序进行编排。在教学过程中,注重模块实验的标准化操作,让学生树立标准化意识;通过连贯的模块化实验将卫生学检验实验转换为带有基础性的细菌分类学实验,在培养学生微生物学检验操作能力的同时,让学生系统地学习大肠杆菌的各种分类学鉴定方法。该模块的考核形式是学生参照专业机构的检验报告出具校园湖水的水质检验报告以及提交研究论文。水质微生物学检验实验模块的教学改革提高了学生的微生物数量研究能力和细菌分类研究能力,有利于学生开展创新型研究。     

Isolation of bovine intestinal Lactobacillus plantarum and Pediococcus acidilactici with inhibitory activity against Escherichia coli O157 and F5

Aims:  The growth rate of bovine lactic acid bacteria (LAB) in five different culture conditions, and their inhibitory activity against Escherichia coli O157 and F5 in two assays was assessed to identify LAB for potential prophylactic use in cattle.
Methods and Results:  106 bovine-derived faecal/intestinal LAB were tested in vitro for tolerance to pH 2·0, pH 4·0, 0·15% and 0·3% bile, aerobic incubation, and for inhibitory activity against E. coli O157 ( n  = 3) and F5 ( n  = 1). While no LAB grew at pH 2·0, LAB survivability varied between 35% and 100% on the other tests. Exactly 7·6% (8/106) of LAB supernatants inhibited the growth of E. coli in two assays, whereas 6·6% (7/106) of isolates enhanced the growth of all E. coli strains. Partial 16s rRNA gene sequencing of six best isolates (95th percentile) revealed that five were Lactobacillus plantarum and one Pediococcus acidilactici.
Conclusion:  Lactobacillus plantarum with acid/bile and aerobic resistance and inhibitory activity against E. coli O157 and F5 inhabit the intestinal tract of healthy cattle. Some LAB may enhance E. coli growth.
Significance and Impact of the Study:  Lactobacillus plantarum and P. acidilactici are natural plant micro-organisms and studied silage inoculants. Their identification from gastrointestinal samples of healthy cattle is prophylactically promising.     

圈养雄獐领域行为和粪便睾酮水平变化的关系

2011年8月到2012年4月间,在上海市浦东新区华夏公园獐重引入试点,采用目标取样、扫描取样和全事件记录法,对圈养条件下6只成体雄獐(Hydropotes inermis)的6种领域行为进行观察,并利用放射免疫分析法(RIA)测定雄獐粪便中的睾酮水平变化.结果表明,雄獐的许多领域行为发生频次表现出明显的月间变化,包括打斗、威胁、取代、追逐和粪尿标记;擦额标记行为频次虽月间差异不显著,但与其他领域行为一样在11月份出现频次峰值.发情期(2011年10月～2012年1月)和非发情期(2011年9月、2012年2～4月),打斗、威胁、粪尿标记和擦额标记行为发生频次差异显著;取代和追逐行为频次差异不显著.6种领域行为的发生频次均在发情期明显高于非发情期.粪便睾酮含量在发情期和非发情期差异显著,发情期明显高于非发情期,其含量在12月份达到峰值(51.16±9.85) ng/g.雄獐的威胁、擦额标记、粪尿标记和打斗行为发生频次与睾酮水平呈显著的正相关性,而取代和追逐行为与睾酮水平变化不具有显著相关性.     

粪便微生物宏基因组来源的热稳定性邻苯二酚1,2-双加氧酶异源表达及酶学性质

【目的】克隆倭蜂猴粪便微生物宏基因组的邻苯二酚1,2-双加氧酶基因cat PLCgl,并对该酶进行异源表达及酶学特性研究。【方法】利用宏基因组高通量测序技术获得cat PLCgl,并对其氨基酸序列进行分析。将cat PLCgl重组到载体p EASY-E2中并转化到大肠杆菌BL21(DE3)中异源表达,研究其酶学性质。【结果】cat PLCgl全长852 bp,G+C含量48%,编码283个氨基酸,理论分子量为33.56 k D。重组Cat PLCgl酶学性质分析显示最适作用p H为7.0,其中在p H 7.0–10.0范围内处理1 h后,酶活剩余90%以上;最适作用温度为40°C,在25°C和40°C条件下稳定性较好,耐受210 h酶活性几乎不变。重组酶在最适条件下的动力学参数K_m、V_(max)和k_(cat)分别为24.9μmol/L、8.3 mmol/(min·g)和13.7 s~(-1);Fe~(2+)、Hg~(2+)、Cu~(2+)、Triton X-100、SDS、Ag+强烈抑制该酶活性,而其它金属离子及有机试剂影响较小。【结论】从倭蜂猴粪便微生物宏基因组中克隆得到邻苯二酚1,2-双加氧酶基因cat PLCgl,并对重组Cat PLCgl酶学性质进行研究,该酶具有较好的热稳定性和耐碱性,在降解环境中的邻苯二酚和生产顺,顺-己二烯二酸方面具有应用潜力。     

普通长翼蝠食性结构及其回声定位与体型特征

在普通长翼蝠(Miniopterus fuliginosus)的捕食区内用灯诱法和网捕法调查潜在食物(昆虫)种类; 用粪便分析法鉴定普通长翼蝠的食物组成,发现其主要捕食体型较大的鳞翅目和鞘翅目昆虫,体积百分比分别为55%和38%.普通长翼蝠具有相对狭长的翼,翼展比为6.94 ± 0.13;翼载为(9.85 ± 0.83)N/m2,相对较大.飞行状态下普通长翼蝠的回声定位叫声为调频下扫型,声脉冲时程为(1.45 ± 0.06)ms,脉冲间隔为(63.08 ± 21.55)ms,主频较低,为(44.50 ± 2.26)kHz.研究表明,普通长翼蝠的形态特征和回声定位特征与其捕食行为有着密切的联系.     

麋鹿繁殖行为和粪样激素水平变化的关系

１９９７年７－９月和１９９８年３－７月间,在江苏大麋鹿保护区共观察到麋鹿的２７种繁殖行为,雄鹿有１７种,雌鹿有１０种,在１９９８年３－７月间,利用放射免疫分析法（ＲＩＡ）测定了鹿麋样中的性激素水平,包括雄鹿的睾酮,雌鹿的酮,雌鹿的孕酮、雌二醇和雌三醇。实验结果表明：１许多繁殖行为的发生频次和持续时间表现出明显的季节变化（Ｐ〈０．０５）,如雄鹿的求偶行为、标记行为和性行为及雌鹿的性行为等在发情期有一     

Viral metagenomics reveals diverse viruses in the fecal samples of children with diarrhea

Diarrhea is the third leading cause of death in developing countries in children under the age of five. About half a million children die of diarrhea every year, most of which in developing countries. Viruses are the main pathogen of diarrhea. In China, the fecal virome of children with diarrhea has been rarely studied. Using an unbiased viral metagenomics approach, we analyzed the fecal virome in children with diarrhea. Many DNA or RNA viruses associated with diarrhea identified in those fecal samples were mainly from six families of Adenoviridae, Astroviridae, Caliciviridae, Parvoviridae, Picornaviridae, and Reoviridae. Among them, the family of Caliciviridae accounts for the largest proportion of 78.42%, following with Adenoviridae (8.94%) and Picornaviridae (8.36%). In addition to those diarrhea-related viruses that have already been confirmed to cause human diarrhea, the viruses not associated with diarrhea were also identified including anellovirus and picobirnavirus. This study increased our understanding of diarrheic children fecal virome and provided valuable information for the prevention and treatment of viral diarrhea in this area.     

Metagenomics analysis of the fecal microbiota in Ring-necked pheasants (Phasianus colchicus) and Green pheasants (Phasianus versicolor) using next generation sequencing

Pheasant reintroduction and conservation efforts have been in place in Pakistan since the 1980 s, yet there is still a scarcity of data on pheasant microbiome and zoonosis. Instead of growing vast numbers of bacteria in the laboratory, to investigate the fecal microbiome, pheasants (green and ring neck pheasant) were analyzed using 16S rRNA metagenomics and using IonS5TMXL sequencing from two flocks more than 10 birds. Operational taxonomic unit (OTU) cluster analysis and phylogenetic tree analysis was performed using Mothur software against the SSUrRNA database of SILVA and the MUSCLE (Version 3.8.31) software. Results of the analysis showed that firmicutes were the most abundant phylum among the top ten phyla, in both pheasant species, followed by other phyla such as actinobacteria and proteobacteria in ring necked pheasant and bacteroidetes in green necked pheasant. Bacillus was the most relatively abundant genus in both pheasants followed by Oceanobacillus and Teribacillus for ring necked pheasant and Lactobacillus for green necked pheasant. Because of their well-known beneficial characteristics, these genus warrants special attention. Bird droppings comprise germs from the urinary system, gut, and reproductive sites, making it difficult to research each anatomical site at the same time. We conclude that metagenomic analysis and classification provides baseline information of the pheasant fecal microbiome that plays a role in disease and health.     

人粪样中雌马酚含量调查及其与菌群结构相关性研究

目的 调查人粪样中大豆素和雌马酚的含量及其与年龄和性别的关系;了解人粪样中雌马酚含量高低与菌群结构的关系.方法 采用高效液相色谱(HPLC)对来自杭州的125份粪样进行大豆素和雌马酚含量检测,并使用生物统计学软件SPSS进行统计学分析;使用PCR-DGGE对粪样中雌马酚含量的高低与菌群结构的关系进行初步研究.结果 HPLC检测结果表明,尽管粪样中雌马酚含量的高低与性别关系不大,但却与年龄大小存在很大的相关性,41 ～50岁年龄组的粪样中雌马酚含量明显高于其他年龄组.PCR-DGGE结果表明,粪样中雌马酚含量的高低与菌群结构无明显相关性.结论 人粪样中雌马酚含量的高低与年龄大小有很强的相关性.     

粪菌移植和益生菌在复发性艰难梭菌感染和炎症性肠病中的应用进展

聚集在人体肠道的菌群对维持机体正常的生理功能具有重要作用,肠道菌群的失调会导致复发性艰难梭菌感染及炎症性肠病等疾病。粪菌移植是将健康供者肠道内的功能菌群转移到患病个体的肠道内,重建患者的肠道微生态环境,从而达到治疗的目的。研究发现,粪菌移植在治疗复发性艰难梭菌感染方面表现出较高的治愈率,同时对炎症性肠病有积极的疗效。益生菌是一类能发挥健康作用的活性微生物,当机体摄入足够数量的益生菌,益生菌能在宿主肠道内定植,可以恢复并维持宿主肠道菌群的平衡。益生菌可作为预防复发性艰难梭菌感染的辅助治疗,同时在缓解炎症性肠病方面也有较好的效果。