Conservation status and ex situ cultivation efforts of endemic flora of the Juan Fernández Archipelago

Was realized field studies and ex situ propagation on the vascular flora of Juan Fernández Archipelago during 15 year period. To evaluate the conservation status of a total of 133 species and subspecies of vascular endemic plants I used a IUCN classification founding: 2 species extinct, 1 extinct in it natural habitat, 52 critically endangered, 37 endangered and 9 vulnerable. Thus, 73.8% are contained in a threat category; only 24 taxon can be considered to be of a lesser conservation concern. The largest threat of extinction is a reduction in individuals in local populations resulting in small, isolated populations. This habitat fragmentation and a reduction in endemic flora has also impacted endemic fauna. Besides, during this period was propagated in nurseries a total of 80 of these species and subspecies (60%). It seem clear the necessity to continue to actions conserve this particular ecosystem.     

The bryophyte flora of northern Iturup (north-west Pacific): between the circumboreal and East Asian floristic regions

Introduction. The Kuril Islands Chain demarcates the boundary between the circumpolar and East Asian floras in the amphi-Pacific and is a trans-Oceanic migration route from warm-temperate insular East Asia to north-east Asia and Beringia. This paper reviews the flora of the northern part of Iturup Island in regards to its bryogeography and taxonomic diversity, as well as its relative position among other bryophyte floras of north-east and East Asia.

Methods. The paper uses morphological methods to identify the species composition and detrended correspondence analysis to identify the position of the northern Iturup Island in the system of local floras of the eastern, extra-tropical, Pacific.

Key results. The flora is closely related to the bryophyte floras of the southern Kurils and Hokkaido Island, but has been found to be distinctly distant from the ‘true’ cool-temperate East Asian floras, as well as from the boreal and hemiarctic floras of north-east Asia. Instead, the floras of the south Kurils and northern Hokkaido Island belong to a peculiar intermediate phytogeographic province that cannot be unambiguously placed in either the East Asian or circumboreal floristic regions. The hemiboreal character of the bryophyte flora of northern Iturup Island is in contrast to the general appearance of many of the dominant vegetation communities on the island, which are more characteristic of the hemiarctic.

Conclusion. There is no robust evidence to refer the bryophyte flora of northern Iturup either to the circumboreal or East Asian Floristic Region, the flora belongs to a unique intermediate province between the two regions.     

Rust fungi in the subantarctic islands of New Zealand

Twenty-four species of rust fungi known from Auckland Islands and Campbell Island are listed, together with details of their host plants. Several species are recorded for the first time in these subantarctic islands. Four species are newly described and illustrated, viz., Milesia polystichi-vestiti on Polystichum vestitum (Dryopteridaceae), Petersonia dracophylli on Dracophyllum longifolium (Epacridaceae), Puccinia austrina on Isolepis habra (Cyperaceae), and Puccinia chathamica on Carex trifida (Cyperaceae). Uredo inflatus is transferred to Uromyces (as Uromyces inflatus comb. nov.) following recognition of the spores on Anisotome latifolia (Apiaceae) as teliospores.     

Evolutionary history of Mycobacterium leprae in the Pacific Islands

As one of the oldest known human diseases, leprosy or Hansen''s disease remains a public health concern around the world with over 200 000 new cases in 2018. Most human leprosy cases are caused by Mycobacterium leprae, but a small number of cases are now known to be caused by Mycobacterium lepromatosis, a sister taxon of M. leprae. The global pattern of genomic variation in M. leprae is not well defined. Particularly, in the Pacific Islands, the origins of leprosy are disputed. Historically, it has been argued that leprosy arrived on the islands during nineteenth century colonialism, but some oral traditions and palaeopathological evidence suggest an older introduction. To address this, as well as investigate patterns of pathogen exchange across the Pacific Islands, we extracted DNA from 39 formalin-fixed paraffin-embedded biopsy blocks dating to 1992–2016. Using whole-genome enrichment and next-generation sequencing, we produced nine M. leprae genomes dating to 1998–2015 and ranging from 4-63× depth of coverage. Phylogenetic analyses indicate that these strains belong to basal lineages within the M. leprae phylogeny, specifically falling in branches 0 and 5. The phylogeographical patterning and evolutionary dating analysis of these strains support a pre-modern introduction of M. leprae into the Pacific Islands.This article is part of the theme issue ‘Insights into health and disease from ancient biomolecules’.     

Rapid evolution in the Nebria gregaria group (Coleoptera: Carabidae) and the paleogeography of the Queen Charlotte Islands

Morphological differentiation in the ground beetles of the Nebria gregaria group, found on the Queen Charlotte Islands, has been used as support for the glacial refugium proposed for the northwest coast of North America. Two members of this species group, N. charlottae and N. louiseae, are restricted to cobble beaches in this archipelago. A third, N. haida, is found only in alpine regions of the archipelago and the adjacent mainland. The remaining two species of the gregaria group, N. lituyae and N. gregaria, show highly restricted distributions in the mountains of the Alaska panhandle and on the beaches of the Aleutian Islands, respectively. To determine the relationships of the five species, we conducted phylogenetic analyses on nucleotide sequence data obtained from five regions of the mitochondrial DNA. In total, 1835 bp were analyzed. The results suggest that one species, N. lituyae, does not belong in the gregaria group, and that only seven mutations separated the two most divergent of the four remaining species. We also conducted random amplified polymorphic DNA fingerprinting analyses on genomic DNA extracted from the five species. Analyses of genetic diversity revealed a lack of molecular differentiation among the Queen Charlotte species, suggesting that these populations may be postglacial in origin and that together N. gregaria, N. charlottae, N. louiseae, and N. haida might represent local variations of a single species. These results are consistent with conclusions derived for the morphological and genetical differentiation among Gasterosteus populations in the archipelago.     

Biogeography and the structure of coral reef fish communities on isolated islands

Aim To determine the applicability of biogeographical and ecological theory to marine species at two remote island locations. This study examines how biogeography, isolation and species geographic range size influence patterns of species richness, endemism, species composition and the abundance of coral reef fishes. Location Christmas Island and the Cocos (Keeling) Islands in the tropical eastern Indian Ocean. Methods Published species lists and underwater visual surveys were used to determine species richness, endemism, species composition and abundance of reef fishes at the islands. These data were statistically compared with patterns of species composition and abundance from the neighbouring ‘mainland’ Indonesian region. Results The two isolated reef fish communities were species‐poor and contained a distinct taxonomic composition with an overrepresentation of species with high dispersal potential. Despite low species richness, we found no evidence of density compensation, with population densities on the islands similar to those of species‐rich mainland assemblages. The mix of Indian and Pacific Ocean species and the proportional representations of the various regional faunas in the assemblages were not influenced by the relative proximity of the islands to different biogeographical provinces. Moreover, species at the edge of their range did not have a lower abundance than species at the centre of their range, and endemic species had substantially higher abundances than widespread species. At both locations, endemism was low (less than 1.2% of the community); this may be because the locations are not sufficiently isolated or old enough to promote the evolution of endemic species. Main conclusions The patterns observed generally conform to terrestrial biogeographical theory, suggesting that similar processes may be influencing species richness and community composition in reef fish communities at these remote islands. However, species abundances differed from typical terrestrial patterns, and this may be because of the life history of reef fishes and the processes maintaining isolated populations.     

DNA damage and biliary PAH metabolites in flatfish from Southern California bays and harbors, and the Channel Islands

Southern California bays and harbors have been shown to contain high concentrations of a variety of contaminants, including polycyclic aromatic hydrocarbons (PAHs), metals, and pesticides. Conventional monitoring tools do not assess exposure to PAHs in fish, or sublethal effects, which can be more sensitive indicators of stress than traditional methods. This study was conducted to evaluate DNA damage (a sublethal effect) and PAH exposure in flatfish from southern California bays and harbors, and the Channel Islands. California halibut (Paralichthys californicus) were collected from eight bays and harbors (Ventura Harbor, Channel Islands Harbor, Marina del Rey, King Harbor, Alamitos Bay, Long Beach Harbor, Newport Bay, San Diego Bay), and a reference site off Camp Pendleton. Pacific sanddab (Citharichthys sordidus) were collected near four of the Channel Islands (San Miguel Island, Santa Cruz Island, Anacapa Island, Santa Barbara Island). Metabolites of high molecular weight PAHs in fish bile were characterized using a semi-quantitative technique that measures fluorescent aromatic compounds (FACs) in fish bile. DNA damage in fish blood cells was assessed by measuring the amount of single-strand breaks in stained DNA using the Comet assay. The concentration of FACs in fish from all bays and harbors was elevated, with average concentrations ranging from three to ten times greater than FACs in reference fish. FAC levels were elevated in Pacific sanddabs from a Channel Islands station located between Santa Cruz Island and Anacapa Island. DNA damage varied by a factor of five among California halibut from bays and harbors, with significant damage occurring in fish from Alamitos Bay. There was a significant association between FAC concentrations and DNA damage in California halibut at Marina del Rey and Ventura Harbor, but not at other locations, presumably due to contaminants other than PAHs.     

The numbers of landbird species on the Isles of scilly

A multiple regression analysis was performed to establish relationships between the number of breeding landbird species and selected environmental variables for the Isles of Scilly, England.
Two analyses were made: the first with all variables log converted, the second without log conversion. In the log model the number of landbird species ( S ) was correlated with island area, r ²= 85.98. In the non-log model, S was most highly correlated with the number of habitats on an island.
Partial correlation analyses confirmed the importance of habitats, rejecting the importance of island area, and indicating that increasing intra-archipelagal isolation alone does not reduce the number of breeding species.