Barring gene expression after XIST: maintaining facultative heterochromatin on the inactive X

X chromosome inactivation refers to the developmentally regulated process of silencing gene expression from all but one X chromosome per cell in female mammals in order to equalize the levels of X chromosome derived gene expression between the sexes. While much attention has focused on the genetic and epigenetic events early in development that initiate the inactivation process, it is also important to understand the events that ensure maintenance of the inactive state through subsequent cell divisions. Gene silencing at the inactive X chromosome is irreversible in somatic cells and is achieved through the formation of facultative heterochromatin (visible as the Barr body) that is remarkably stable and faithfully preserved. Here we review the many features of inactive X chromatin in terminally differentiated cells and address the highly redundant mechanisms of maintaining the inactive X chromatin.     

Effect of subtherapeutic concentrations of tylosin on the inhibitory stringency of a mixed anaerobe continuous-flow culture of chicken microflora against Escherichia coli O157:H7

AIMS: The aim of this study was twofold: first to determine the effect of subtherapeutic concentrations of tylosin, a macrolide antibiotic used for growth promotion, on a mixed anaerobic continuous-flow fermentation culture of chicken gastrointestinal microorganisms (CCF) and secondly, to determine if these concentrations would allow persistence of Escherichia coli O157:H7 in CCF. METHODS AND RESULTS: CCF was treated with tylosin at 10.0, 20.0 and 40.0 microg ml(-1). Tylosin treatment resulted in a significant (P < 0.0001) decrease in total volatile fatty acids (VFAs) from a mean concentration of 101 +/- 10.8 micromol ml(-1) in control cultures to 32.0 +/- 6.3 and 40.2 +/- 9.6 micromol ml(-1) in 10 and 40 microg ml(-1) treated cultures, respectively. Untreated CCF challenged with E. coli O157:H7 cleared the challenge microorganism in 7 days at a rate of 0.96 log10 CFU ml(-1) day(-1). In contrast, E. coli O157:H7 persisted in all tylosin treated cultures. CONCLUSIONS: In the presence of tylosin, E. coli O157:H7 was able to persist in the CCF culture. The significant decrease in the production of VFAs may have been a contributing factor. SIGNIFICANCE AND IMPACT OF THE STUDY: The use of low-level, growth-promoting antimicrobials may compromise the ability of normal microflora that serve as a natural host defence against infection.     

Origin of facultative heterochromatin in the endosperm ofGagea lutea (Liliaceae)

Summary Facultative heterochromatin occurs not only in certain animals in connection with sex determination but also in members of at least one plant genus,Gagea (Liliaceae s. str.), but here in the course of embryo sac development, fertilization, and endosperm formation. The present contribution intends to provide undebatable photographic and cytometric evidence, previously not available, for the events in the course of which three whole genomes in the pentaploid endosperm nuclei ofGagea lutea become heterochroma-tinized. In this plant, embryo sac formation usually follows the Fritillaria type, i.e., the embryo sac is tetrasporic, and a 1 + 3 position of the spore nuclei is followed by a mitosis in which the three chalazal spindles fuse and two triploid nuclei are formed. A triploid chalazal polar nucleus is derived from one of these, which contributes to the pentaploid endosperm. These nuclei in the chalazal part of the embryo sac show stronger condensation compared with the micropylar ones. The pycnosis of the triploid polar nucleus is maintained and even enhanced during endosperm proliferation, while the micropylar polar nucleus and the sperm nucleus maintain their euchromatic condition. The origin of the heterochromatic masses in the endosperm nuclei from the three chalazal genomes of the central cell is unambiguously evident from the distribution of heterochromatic chromosomes in the first endosperm mitosis and the following interphase. DNA content measurements confirm a 3 2 relationship of heterochromatic and euchromatic chromosome sets, which is usually maintained up to the cellularized endosperm. Pycnotic nuclei in the chalazal part of megagametophytes are characteristic of several embryo sac types, but only forGagea spp. it is documented that such nuclei can take part in fertilization and endosperm formation.Dedicated to Professor Walter Gustav Url on the occasion of his 70th birthday     

<Emphasis Type="Italic">Paenibacillus ginsengisoli</Emphasis> sp. nov., a novel bacterium isolated from soil of a ginseng field in Pocheon province,South Korea

A Gram-positive, aerobic or facultative anaerobic, motile, spore-forming bacterial strain, designated Gsoil 1638T, was isolated from a soil sample of a ginseng field in Pocheon province (South Korea), and was characterized taxonomically by using a polyphasic approach. It grew well on nutrient agar medium, utilized a fairly narrow spectrum of carbon sources and tolerated 10% NaCl. The isolate was positive for catalase and oxidase tests but negative for the degradation of macromolecules such as casein, collagen, starch, chitin, CM-cellulose, xylan and DNA. The G + C content of the genomic DNA was 50.7 mol%. The predominant isoprenoid quinone was menaquinone 7 (MK-7). The major fatty acids were anteiso-C15:0 (44%) and C16:0 (25%). Comparative 16S rRNA gene sequence analysis showed that strain Gsoil 1638T fell within the radiation of the cluster comprising Paenibacillus species and joined Paenibacillus anaericanus DSM 15890T with a bootstrap value of 100%. These two strains shared 99.5% 16S rRNA gene sequence similarity with each other. The phylogenetic distance from any other validly described species within the genus Paenibacillus was less than 96.2%. DNA-DNA relatedness value between strain Gsoil 1638T and its closest phylogenetic neighbor, Paenibacillus anaericanus, was 62%. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain Gsoil 1638T (= KCTC 13931T = LMG 23406T = CCUG 52472T) was classified in the genus Paenibacillus as the type strain of a novel species, for which the name Paenibacillus ginsengisoli sp. nov. is proposed.     

Classification and typing methods of black-pigmented Gram-negative anaerobes

Abstract Until recently, black-pigmented Gram-negative anaerobes were classified as ‘black-pigmented Bacteroides ’. At present, 11 distinct species are recognized in this group. Because of major differences with Bacteroides fragilis , the type species of the genus Bacteroides , new genera have been proposed: Porphyromonas for three asaccharolytic species, and Prevotella for the saccharolytic species. Typing methods have been developed for some species of black-pigmented Gram-negative anaerobes. These include biotyping and serotyping, but relatively few types can be distinguished with these methods. Recently, DNA restriction endonuclease analysis has been used for typing of P. gingivalis, Pr. intermedia and P. endodontalis strains. Great heterogeneity was observed within all three species. This typing method can be useful for epidemiological studies.     

棉铃虫飞行能力和兼性迁飞的初步研究

应用吊飞装置研究比较了成虫的飞行能力 ,按飞行节律和时间区分出长飞型、短飞行和中间型 3种类型 .研究了温度和食料对生殖前期、产卵量、寿命等的影响 ,证实在 2 8℃下生殖前期仅 2 .13± 0 .67d ,温度、食料等对成虫生殖前期的影响不明显 ,可见适合其迁飞的生理时期较短 ,仅为 1～ 2个夜晚 .用雌蛾卵巢连续解剖的方法比较了江苏丰县和辽宁朝阳两地 2、3代的虫源性质 ,证实朝阳 2～ 3代成虫全部或部分从外地迁入 ,而丰县种群则以本地繁育为主 .与多种迁飞性和非迁飞性害虫比较 ,讨论了中国棉铃虫兼性迁飞特性和迁飞潜能的评估 .     

产生坑肿瘤生素Sandramycin的南极放线菌C3905

从南极乔治王岛土壤分离到一株诺卡氏菌形放线菌Ｃ３９０５菌株。其气生菌丝白色,其内菌丝无色至乳脂或浅粉;菌丝直径０．５～０．８μｍ,断裂为杆状和球状体,表面光滑。胞壁化学Ｉ型;无枝菌酸;磷酸类酯ＰＩ型;优势甲基萘酯为ＭＫ－９（Ｈ４）。ＤＮＡ中Ｇ＋Ｃ含量为６８．３～６８．９ｍｏｌ％。兼性嗜冷,生长适温为１５℃～２０℃。产生抗肿瘤抗生素ｓａｎｄｒａｍｙｃｉｎ。基于以上特征及分子遗传分类的研究结果,我们建     

细菌作为抗肿瘤剂的研究进展

厌氧和兼性厌氧细菌能够专一性地优先累积在肿瘤的低氧量和坏死的区域,这使其具有很好的靶向性。它们能够分泌毒素或水解酶以及引起针对肿瘤的免疫反应,具有溶瘤作用。基因工程技术能够改造这些细菌使其具有抗肿瘤的特性,进一步增加治疗效果。最新的研究发现,这些细菌的某些代谢产物也具有增强肿瘤治疗效果的作用,为肿瘤的治疗提供了新的思路。本文对细菌作为抗肿瘤剂的相关研究进行综述。     

Geoalkalibacter ferrihydriticus gen. nov. sp. nov., the first alkaliphilic representative of the family Geobacteraceae, isolated from a soda lake

Investigation of iron reduction in bottom sediments of alkaline soda lakes resulted in the isolation of a new obligately anaerobic iron-reducing bacterium, strain Z-0531, from Lake Khadyn (Tuva, Russia) sediment samples. The cells of strain Z-0531 are short (1.0–1.5 by 0.3–0.5 μm), motile, non-spore-forming, gram-negative rods. The isolate is an obligate alkaliphile, developing in the pH range of 7.8–10.0, with an optimum at pH 8.6. It does not require NaCl but grows at NaCl concentrations of 0–50 g/l. It can oxidize acetate with such electron acceptors as amorphous Fe(III) hydroxide (AFH), EDTA-Fe(III), anthraquinone-2,6-disulfonate (quinone), Mn(IV), and S⁰. On medium with EDTA-Fe(III), the isolate can oxidize, apart from acetate, ethanol, pyruvate, oxalate, arginine, tartrate, lactate, propionate, and serine. H₂ is not utilized. The reduced products formed during growth with AFH are siderite or magnetite, depending on the growth conditions. The isolate is incapable of fermenting sugars, peptides, and amino acids. Yeast extract or vitamins are required as growth factors. The organism is capable of dinitrogen fixation and harbors the nifH gene. The DNA G+C content is 55.3 mol %. 16S rRNA analysis places strain Z-0531 into the family Geobacteraceae. Its closest relative (93% similarity) is Desulfuromonas palmitatis. Based on phenotypic distinctions and phylogenetic position, it is proposed that this strain be assigned to the new genus and species Geoalkalibacter ferrihydriticus gen. nov., sp. nov. (Z-0531^T-DSMZ-17813-VKMB-2401). Original Russian Text ? D.G. Zavarzina, T.V. Kolganova, E.S. Boulygina, N.A. Kostrikina, T.P. Tourova, G.A. Zavarzin, 2006, published in Mikrobiologiya, 2006, Vol. 75, No. 6, pp. 775–785.     

Environmental Regulation of CO2 Exchange Pattern in Facultative CAM Plants

Three facultative CAM plants, Sedum spectabile, S. aizoon and Mesembryanthemum cordifolium, could take up CO2 throughout the night and daytime, and no phase Ill was observed during cloudy weather. The CO2 exchange patterns during cloudy day differed obviously from that during sunny day. But in the obligate CAM plants, Kalanchoe daigremontiana, Orostachys fimbriatus and Bryophyllum pinnatum, there were phase Ⅲ during cloudy day. These results showed that the COs exchange patterns with uptake of CO2 throughout the night and daytime were universal in facultative CAM plants during cloudy day, but not in obligate CAM plants, of which the CO2 exchange patterns were very stable. In the three facultative CAM plants, the difference of exchange patterns between cloudy and sunny days depended mainly on temperature change. The effect of the temperature on CO2 exchange patterns was mediated by the decarboxylation rate. At high temperature, the decarboxylation rate could be enhanced. It was found that the accumulation of malic acid at night in the three obligate CAM plants was much more than that in the three facultative C AM plants. So during cloudy day, the decarboxytion rate in the three obligate CAM plants was also higher. This might be an important cause that obligate CAM plants need not to take up CO2 during the daytime.