Linking Data Choices and Context Specificity in Life Cycle Assessment of Waste Treatment Technologies: A Landfill Case Study

To generate meaningful results, life cycle assessments (LCAs) require accurate technology data that are consistent with the goal and scope of the analysis. While literature data are available for many products and processes, finding representative data for highly site‐specific technologies, such as waste treatment processes, remains a challenge. This study investigated representative life cycle inventory (LCI) modeling of waste treatment technologies in consideration of variations in technological level and climate. The objectives were to demonstrate the importance of representative LCI modeling as a function of the specificity of the study, and to illustrate the necessity of iteratively refining the goal and scope of the study as data are developed. A landfill case study was performed where 52 discrete landfill data sets were built and grouped to represent different technology options and geographical sites, potential impacts were calculated, and minimum/maximum (min‐max) intervals were generated for each group. The results showed decreasing min‐max intervals with increasing specificity of the scope of study, which indicates that compatibility between the scope of study and LCI model is critical. Hereby, this study quantitatively demonstrates the influence of representative modeling on LCA results. The results indicate that technology variations and site‐specific conditions (e.g., the influence of precipitation and cover permeability on landfill gas generation and collection) should be carefully addressed by a systematic analysis of the key process parameters. Therefore, a thorough understanding of the targeted waste treatment technologies is necessary to ensure that appropriate data choices are made within the boundaries of the defined scope of the study.     

THE CARBONIFEROUS FISH GENERA STREPSODUS AND ARCHICHTHYS (SARCOPTERYGII: RHIZODONTIDA): CLARIFYING 150 YEARS OF CONFUSION

Abstract:  The Carboniferous genus Strepsodus contains several described species, but has been mired in taxonomic confusion for nearly 150 years. The little-known genus Archichthys (with two described species) is usually treated as a junior synonym of Strepsodus . These problems have been caused by, among other things, the poor quality of most specimens, and a heavy reliance on tooth and scale morphology when erecting new species. Both genera are known from Upper and Lower Carboniferous river and lake deposits in the UK, particularly coal shales, cementstones and freshwater limestones. However, Strepsodus has also been discovered at a number of North American localities (e.g. Greer in Iowa, USA, and Horton Bluff in Nova Scotia, Canada) and more recently in Australia (Ducabrook, Queensland). Rhizodontid remains from two Upper Devonian sites (one in Colombia, one in Turkey) have been attributed to Strepsodus , due to a misunderstanding of the defining characteristics (autapomorphies) of the genus. This paper reviews what is known of Strepsodus and Archichthys , and advocates that each be treated as a monospecific genus until reliable morphological evidence of further speciation is found. A neotype specimen for Strepsodus sauroides is proposed, and a check-list of published rhizodontid species is appended.     

Palaeoecological interpretation of the late Miocene landscapes and vegetation of northern Greece: A comment to Merceron et al., 2016 (Geobios 49, 135–146)

Recent works on feeding habits of ungulates, isotopic composition of equid tooth enamel, and phytoliths from late Miocene localities of northern Greece suggested the presence of savannah and excluded dense forests. Furthermore, Mediterranean-like climates were advocated for the late Miocene of Greece. Here, I compare palaeoenvironments inferred for two mammal localities from Chalkidiki and the Axios Valley (Nikiti, upper Vallesian and lower Turolian; Dytiko, upper Turolian) with evidence from contemporaneous plant assemblages from adjacent areas in Greece and Bulgaria. I use vegetation units inferred from pollen and spore, fruit and seed, and leaf assemblages and compare them with the vegetation inferred from mammal and phytolith data. Open vegetation as inferred from mammal and phytolith data is also part of the range of vegetation units discovered from the pollen and spore, seed and fruit, and leaf record (here called the palaeobotanical record). Poaceae are consistently present in late Vallesian to late Turolian pollen records of northern Greece. Further, a number of vegetation units are indicative of forest vegetation ranging from lowland to upland forests dominated by woody angiosperms and mixed coniferous-angiosperm forests. The presence of such forests is not in conflict with the results from mammal and phytolith studies, but it broadens the view on landscapes present in the late Miocene of northern Greece. In addition to a generalized vegetation type commonly inferred by mammal studies, the palaeobotanical record demonstrates the presence of various complementary vegetation types. A comprehensive view on late Miocene landscapes in northern Greece shows that there is no conflict in inferring open herb dominated landscapes and light to dense forests and provides new opportunities for the ecological interpretation of late Miocene ungulates.     

Responses to Comments and Closer to a Definition of Applied Psychophysiology

This paper responds to the nine response papers to the initial paper in this series. This paper also presents a revised working definition of applied psychophysiology which is in concert with many of the responses.     

Predicting Biological Invasions

There are various approaches to explain the mechanisms of biological invasions. It is possible (1) to focus on the characteristics of invading species and (2) on those of the ecosystems invaded, (3) to investigate the relationship between these two factors (key–lock approach), or (4) to differentiate the invasion process in time. Each of these approaches may serve to improve the understanding of some aspects of biological invasions, and each of them is in some way suitable for the purpose of predicting invasions. We discuss the usefulness and the limitations of these approaches, focusing on case studies from central Europe. An example of the fourth approach, a model of steps and stages of plant invasions that describes the invasion process in greater detail, illustrates some general limitations in predicting biological invasions. This revised version was published online in July 2006 with corrections to the Cover Date.     

Occurrence of Halococcus spp. in the nostrils salt glands of the seabird Calonectris diomedea

The nostrils of the seabird Calonectris diomedea are endowed with a salt-excreting gland that could produce a suitable environment for the colonization of extreme halophilic prokaryotes. We have studied in this organ the presence of extreme halophiles by means of culturing techniques. We could easily cultivate members of haloarchaea, and all cultures studied were identified as members of one of the two species Halococcus morrhuae and Hcc. dombrowskii. In order to reveal the diversity of these colonizers, we undertook a taxonomic study. Altogether, the results indicated that members of the genus Halococcus may constitute a part of the natural epizootic microbiota of C. diomedea, and that they exhibit such an important degree of taxonomic variability that appeals for a pragmatic species definition. This seabird nests in the west Mediterranean coasts, but its migratory habits, reaching locations as distant from the Mediterranean as the South Atlantic, may help in the dispersal mechanisms of haloarchaea through the Earth’s surface.     

Retention of spliceosomal components along ligated exons ensures efficient removal of multiple introns

The majority of mammalian pre-mRNAs contains multiple introns that are excised prior to export and translation. After intron excision, ligated exon intermediates participate in subsequent intron excisions. However, exon ligation generates an exon of increased size, a feature of pre-mRNA splicing that can interfere with downstream splicing events. These considerations raise the question of whether unique mechanisms exist that permit efficient removal of introns neighboring ligated exons. Kinetic analyses of multiple intron-containing pre-mRNAs revealed that splicing is more efficient following an initial intron removal event, suggesting that either the recruitment of the exon junction complex (EJC) to ligated exons increases the efficiency of multiple intron excisions or that the initial definition of splice sites is sufficient to permit efficient splicing of introns neighboring ligated exons. Knockdown experiments show that the deposition of the EJC does not affect subsequent splicing kinetics. Instead, spliceosomal components that are not involved in the initial splicing event remain associated with the pre-mRNA to ensure efficient removal of neighboring introns. Thus, ligated exons do not require redefinition, providing an additional kinetic advantage for exon defined splice sites.     

The exon junction complex component Y14 modulates the activity of the methylosome in biogenesis of spliceosomal small nuclear ribonucleoproteins

The RNA-binding protein Y14 heterodimerizes with Mago as the core of the exon junction complex during precursor mRNA splicing and plays a role in mRNA surveillance in the cytoplasm. Using the Y14/Magoh heterodimer as bait in a screening for its interacting partners, we identified the protein-arginine methyltransferase PRMT5 as a candidate. We show that Y14 and Magoh, but not other factors of the exon junction complex, interact with the cytoplasmic PRMT5-containing methylosome. We further provide evidence that Y14 promoted the activity of PRMT5 in methylation of Sm proteins of the small nuclear ribonucleoprotein core, whereas knockdown of Y14 reduced their methylation level. Moreover, Y14 overexpression induced the formation of a large, active, and small nuclear ribonucleoprotein (snRNP)-associated methylosome complex. However, Y14 may only transiently associate with the snRNP assembly complex in the cytoplasm. Together, our results suggest that Y14 facilitates Sm protein methylation probably by its activity in promoting the formation or stability of the methylosome-containing complex. We hypothesize that Y14 provides a regulatory link between pre-mRNA splicing and snRNP biogenesis.     

Exon 9 skipping of apoptotic caspase-2 pre-mRNA is promoted by SRSF3 through interaction with exon 8

Alternative splicing plays an important role in gene expression by producing different proteins from a gene. Caspase-2 pre-mRNA produces anti-apoptotic Casp-2S and pro-apoptotic Casp-2L proteins through exon 9 inclusion or skipping. However, the molecular mechanisms of exon 9 splicing are not well understood. Here we show that knockdown of SRSF3 (also known as SRp20) with siRNA induced significant increase of endogenous exon 9 inclusion. In addition, overexpression of SRSF3 promoted exon 9 skipping. Thus we conclude that SRSF3 promotes exon 9 skipping. In order to understand the functional target of SRSF3 on caspase-2 pre-mRNA, we performed substitution and deletion mutagenesis on the potential SRSF3 binding sites that were predicted from previous reports. We demonstrate that substitution mutagenesis of the potential SRSF3 binding site on exon 8 severely disrupted the effects of SRSF3 on exon 9 skipping. Furthermore, with the approach of RNA pulldown and immunoblotting analysis we show that SRSF3 interacts with the potential SRSF3 binding RNA sequence on exon 8 but not with the mutant RNA sequence. In addition, we show that a deletion of 26 nt RNA from 5′ end of exon 8, a 33 nt RNA from 3′ end of exon 10 and a 2225 nt RNA from intron 9 did not compromise the function of SRSF3 on exon 9 splicing. Therefore we conclude that SRSF3 promotes exon 9 skipping of caspase-2 pre-mRNA by interacting with exon 8. Our results reveal a novel mechanism of caspase-2 pre-mRNA splicing.