Genetic Analysis of the Hox Hydrogenase in the Cyanobacterium Synechocystis sp. PCC 6803 Reveals Subunit Roles in Association,Assembly, Maturation,and Function

Hydrogenases are metalloenzymes that catalyze 2H⁺ + 2e⁻ ↔ H₂. A multisubunit, bidirectional [NiFe]-hydrogenase has been identified and characterized in a number of bacteria, including cyanobacteria, where it is hypothesized to function as an electron valve, balancing reductant in the cell. In cyanobacteria, this Hox hydrogenase consists of five proteins in two functional moieties: a hydrogenase moiety (HoxYH) with homology to heterodimeric [NiFe]-hydrogenases and a diaphorase moiety (HoxEFU) with homology to NuoEFG of respiratory Complex I, linking NAD(P)H ↔ NAD(P)⁺ as a source/sink for electrons. Here, we present an extensive study of Hox hydrogenase in the cyanobacterium Synechocystis sp. PCC 6803. We identify the presence of HoxEFUYH, HoxFUYH, HoxEFU, HoxFU, and HoxYH subcomplexes as well as association of the immature, unprocessed large subunit (HoxH) with other Hox subunits and unidentified factors, providing a basis for understanding Hox maturation and assembly. The analysis of mutants containing individual and combined hox gene deletions in a common parental strain reveals apparent alterations in subunit abundance and highlights an essential role for HoxF and HoxU in complex/subcomplex association. In addition, analysis of individual and combined hox mutant phenotypes in a single strain background provides a clear view of the function of each subunit in hydrogenase activity and presents evidence that its physiological function is more complicated than previously reported, with no outward defects apparent in growth or photosynthesis under various growth conditions.     

The Selenocysteine-specific Elongation Factor Contains a Novel and Multi-functional Domain

The selenocysteine (Sec)-specific eukaryotic elongation factor (eEFSec) delivers the aminoacylated selenocysteine-tRNA (Sec-tRNA^Sec) to the ribosome and suppresses UGA codons that are upstream of Sec insertion sequence (SECIS) elements bound by SECIS-binding protein 2 (SBP2). Multiple studies have highlighted the importance of SBP2 forming a complex with the SECIS element, but it is not clear how this regulates eEFSec during Sec incorporation. Compared with the canonical elongation factor eEF1A, eEFSec has a unique C-terminal extension called Domain IV. To understand the role of Domain IV in Sec incorporation, we examined a series of mutant proteins for all of the known molecular functions for eEFSec: GTP hydrolysis, Sec-tRNA^Sec binding, and SBP2/SECIS binding. In addition, wild-type and mutant versions of eEFSec were analyzed for Sec incorporation activity in a novel eEFSec-dependent translation extract. We have found that Domain IV is essential for both tRNA and SBP2 binding as well as regulating GTPase activity. We propose a model where the SBP2/SECIS complex activates eEFSec by directing functional interactions between Domain IV and the ribosome to promote Sec-tRNA^Sec binding and accommodation into the ribosomal A-site.     

预警系统模型

本文利用物元、可拓集合、经典域、节域、关联函数等概念以及其它数学概念,建立预警系统模型,应用于缺血性中风预报,效果较好．     

Neighbour interaction and stability in subalpine meadow communities

Abstract. The ability of a plant community to maintain favourable conditions within its canopy was examined by means of removing the vegetation around individual plants (radius ca. 1 m) and measuring light and temperature relations and rates of net photosynthesis in both isolated and sward plants. The results suggest that neighbour interactions are important for the stabilization of environmental relations within the canopy, at least in hay meadows as compared to intensively grazed pastures. The canopy may maintain optimal conditions for plant life within a wider variation of environmental factors. At the same time, plants have to adapt to contrasting (sunny vs. cloudy) weather conditions occurring with about equal frequency during the vegetation period in the central Caucasus.     

Grassland structure in native pastures: links to soil surface condition

Summary When grassland is grazed by livestock, the structure of the sward changes in a patchy manner. With continuous selective grazing there is a mosaic of short and tall patches but as grazing intensifies the area of short‐grazed patch increases until the paddock has a lawn‐like appearance. This mosaic of patch structures can be stable, as short patches tend to attract repeated grazing and tall patches tend to be avoided. Because heavy grazing can detrimentally affect soil and water functions in grassland (ultimately resulting in erosion), we aimed to assess how well the physical structure of the sward reflects soil surface condition. We described four grassland patch structures that were assumed to reflect different levels of present grazing, and to some extent, past grazing pressure. We assessed patch structure and two other grass‐related variables (basal area of a ‘large tussock’ functional group and basal area of all perennial grass) as possible indicators of soil surface condition. Three indices of condition were measured in the field. The infiltration and nutrient cycling index declined progressively across patch structures, consistent with increasing grazing pressure. The stability index was found to be reduced only for the most heavily grazed grass structure (short patches). We found the ‘large tussock’ grass functional group to be a more sensitive indicator of soil surface condition than the group consisting of all perennial grasses. We found no evidence of sudden soil surface condition decline beyond a certain level of grass basal area, that is, there was no evidence of thresholds, rather, incremental loss of condition accompanied grass decline. We are thus not able to further refine an earlier proposed management recommendation ‘Graze conservatively to maintain dominance of large and medium tussock grasses over 60–70% of the native pastures’, except to suggest the use of short patches as a more practical indicator, rephrasing the recommendation as ‘Graze conservatively to allow a maximum of 30% short‐grazed patches in native pastures’.     

Estimation of population parameters by optimizing catch effort allocation

1. In this study, we have developed a new method to estimate population parameters and applied it to a concrete example on the situation that there are two fisheries resources which are depleted only by catch, and that these two resources are not caught equally because of the difference of prices.
2. Switching function, which is originally used to describe the effort allocation that one predator eats two preys, has been introduced. We have constructed a model of fishery in which each fisherman pursues economical optimum.
3. The population size of two species at the beginning of the fishing season, catchability coefficient and parameters of switching function are estimated by the criterion of minimum error sum of squares between CPUE (catch per unit effort) of data and that by model.
4. We have applied it to the diver fishery of abalone in Ojika Island, Nagasaki Prefecture. The model describes well the situation during the season that CPUE of the less expensive species increases gradually as the population of the other species is depleted.

     

The species-area relation for archipelago biotas: Islands as samples from a species pool

If the immigration of species from a mainland or among islands is taken into account, each island of an archipelago can be regarded as a sample from a species pool. When two or more islands are combined so as to give larger samples, the resultant species-area relation does not differ from that observed in a continuous and homogeneous habitat on a mainland. This relation can be described by either of the two mathematical models proposed before (Kobayashi , 1975, 1976). A power function seems to be insufficient because the discrepancy between the observed and the calculated values becomes larger with the increasing area. In a log-log plot, the slope values for these alternatives to a power function vary continuously from 1 to 0 as the area increases. Owing to the spatially clumped distribution of each species, the number of species found on a single island is less than that found on several smaller islands of equivalent total area. Hence the species-area relation for individual islands has a smaller slope value than that obtained by combining the different numbers of islands and approaches a power function in form. From these results, it is concluded that the species-area data on archipelago biotas are equivalent to the case where separate samples of different sizes are drawn from a universe in which each species is spatially distributed in clumps. The properties of archipelago biotas which have so far been evidenced or predicted are consistent with this conclusion.     

Sensilles énigmatiques de l'antenne de certains Coléoptères

Résumé Nos recherches au microscope électronique portent sur une structure nerveuse en lamelles découverte pour la première fois dans l'antenne duSpeophyes, qu'on étudie comparativement chez les Coléoptères hypogés et épigés. Nous constatons qu'elle existe à l'extrémité de l'antenne chez toutes les espèces cavernicoles de l'échantillon examiné ainsi que chez plusieurs espèces épigées. Nous n'avons pas rencontré cet organe à l'extrémité de l'antenne de trois espèces épigées; nous ne pouvons cependant pas affirmer qu'il n'existe pas, les articles inférieurs de l'antenne n'ayant pas été examinés. Son plus grand développement chez les espèces cavernicoles laisse supposer une fonction plus spécifiquement adaptée à ce milieu. La structure fine de ces lamelles présentant une étroite similitude avec celle des photorécepteurs, nous avons émis l'hypothèse d'une sensibilité à des rayonnements présents dans la grotte, par exemple au rayonnement infrarouge. Il faut souligner que la nature ciliaire de ces structures est en désaccord avec l'appartenance de l'Insecte à la lignée rhabdomérique.

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Comparative study on the lamellated nervous structures in the antenna of certain coleoptera

Summary The lamellated nervous system discovered in the antennae of the beetleSpeophyes, has been comparatively investigated in various hypogeous and epigeous species. It was found in almost all of the species studied in the tip of the antennae. It was, however, not detected in a few of the epigeous forms. Its extensive development in the cave develling species suggests a specific function in this particular environment. The fine structure of the lamellae is closely comparable to that of photosensory cells. Therefore it is assumed that they serve a similar function, i. e. the perception of infrared radiation in the caves. Its ciliary nature does not correspond to the rhabdomeric structure of insect eyes.

Technicienne associée.     

On the structure of the pulmonate osphradium

Summary The osphradium of Planorbarius consists of a blindly-ending ciliated canal, formed by an infolding of the mantle epithelium, and a basal ganglion of nerve cells which is comparable in complexity with ganglia of the central nervous system. The distribution of cell types in the osphradial epithelium is specialised so that three regions can be recognised; the ciliated, the secretory and the sensory regions. The basal sensory region of the canal epithelium consists of ciliated cells and is innervated by sensory neurones of the osphradial ganglion. The middle secretory region contains mainly of mucus-secreting cells and the epithelium adjacent to the osphradial aperture of ciliated cells and secretory cells of a second type. The sensory neurones of the osphradial ganglion are bipolar or of a modified monopolar type. Other monopolar neurones, similar to those common in the central nervous system are of non-sensory function. The osphradium of Paludina, although of typical prosobranch form, possesses ciliated pits similar to the single canal of Planorbarius, which may indicate a shared modality of receptor function. A definite function cannot be ascribed to the pulmonate osphradium based on morphological evidence alone.