Analysis of mtDNA indicates weak temporal genetic heterogeneity in pink salmon spawning runs in two rivers on Sakhalin Island

Both odd- and even-year pink salmon populations were sampled during the spawning runs in Firsovka and Bakhura rivers on Sakhalin Island. Four collections of 30 fish spaced at 2-week intervals were taken from each river in 2 consecutive years. Four restriction endonucleases were used to examine 2·15% of the mitochondrial genome. Eighteen variable sites and three types of insertion defined 37 haplotypes among 449 fish. Heterogeneity tests showed highly significant differences among temporal collections taken in the odd year from Bakhura River, and no significant differences among temporal collections from the other three spawning runs. However, probabilities of homogeneity among temporal collections were low in all tests, and an integral estimate of the probability of homogeneity for the total set of tests was less than 0·001, indicating highly significant overall temporal heterogeneity. Analysis of molecular variance (AMOVA), revealed that a small portion of the variance was distributed among temporal collections, and small φ_ST values that differed significantly from zero only in the odd-year population in Bakhura River. Temporal differences in spawning are probably adapative, and allow greater productivity in areas of high spawning densities.     

Density-dependent melanism in sub-arctic populations of winter moth larvae (Operophtera brumata)

Abstract.  1. The aim of this 4-year observational study was to test for the presence of direct and delayed density-dependent larval melanism in the geometrid moth species Operophtera brumata (winter moth) in northern Norway.
2. Data from many populations with a wide range of population densities in time and space facilitated statistical analyses that could separate the effects of current and past density. The data also included different phases of the 10-year population cycle of this species so that eventual non-linear density effects due to population phase could be detected.
3. The results showed that the prevalence of melanism had a strong positive, linear relation to population density within years, whereas there was no evidence for a delayed effect from the year before or dependency on the phase of the population cycle.
4. In combination, these results limit the range of possible explanations of larval melanism in this outbreaking species. The possible reasons why winter moth larvae might benefit from crowding-induced melanism are discussed.     

Effect of Temperature on Germination in Northernmost Populations of Culcita macrocarpa and Woodwardia radicans

Abstract: Spore germination of Culcita macrocarpa C. Presl and Woodwardia radicans (L.) Sm. from nine populations at the northern limit of their distribution, in the northwest Iberian Peninsula, was investigated. In a first experiment, population type and temperature (10, 15, 20, and 25 °C) were both found to affect germination percentage and germination time significantly in both species. There were also significant interactions between the two factors with respect to the percentage germination of C. macrocarpa and the germination time of W. radicans. In C. macrocarpa there was an outstanding increase in germination time at 15 °C and, above all, at 10 °C, whereas in W. radicans the most remarkable result was the existence of two populations with especially low germination percentages. In a second experiment, germination of 20 individuals from each population of W. radicans was compared with similar inter-population differentiation. Although its variability possibly has a genetic basis, these species are able to germinate successfully, and it seems probable that the season in which it occurs depends more on spore release than on thermal conditions in the populations. The effect of temperature on germination in both species does not explain their coastal distribution. Temperature is probably more important in limiting other stages of the life cycle.     

Species status and population structure of the Australian Eucalyptus pest Paropsis atomaria Olivier (Coleoptera: Chrysomelidae)

1 Paropsis atomaria Olivier represents an emergent pest of Eucalyptus plantations in Queensland and New South Wales, Australia. Most prior studies on the biology and control of P. atomaria have centred on populations from Canberra in the Australian Capital Territory, but the biological relationship between beetles from Canberra and those from up to 1500 km further north are unknown. 2 DNA markers were used to determine whether P. atomaria from Canberra are the same biological species as those from Eucalyptus forestry plantations in northern New South Wales and Queensland, where the beetle has become an important pest. Using the mitochondrial gene, cytochrome c oxidase I (COI), individuals collected from across the distribution of P. atomaria were investigated for haplotype diversity and levels of mitochondrial divergence. 3 Within P. atomaria, genetic distance averaged 0.5% across 23 unique haplotypes for 93 individuals, with an average of 14% difference between P. atomaria and the outgroup species, Paropsis obsoleta. Significant genetic structure was observed relative to geographical distribution, but not with respect to host plant species of origin. Greatest divergence was between the southern‐most sample site (Canberra) and northern sites in New South Wales and Queensland, indicating reduced gene flow between these regions. 4 Individuals from across eastern Australia belong to the same genetic species with population substructuring evident. Consequently, there is no evidence to suggest cryptic species complexes exist within the currently defined taxon. Continued implementation of control strategies for P. atomaria across its distribution is appropriate.     

Estimating nests not present at the time of breeding surveys: an important consideration in assessing nesting populations

ABSTRACT.   Counts of nest starts are often used as indicators of the size of avian nesting populations, or of avian productivity. However, the accuracy of single or repeated counts of unmarked nests over time for estimating seasonal numbers of nests may be strongly affected by nest events that fall in between survey dates, or that occurred prior to or after the survey period. Accuracy may also be affected by uncertainty in the interpretation of counts due to overlap between starting and ending dates of asynchronous nests during the intervisit interval. To measure the combined magnitude of these effects on survey accuracy, we overlaid a monthly "survey" regime on known initiation and ending dates of 2055 nests of ciconiiform birds. Assuming all nests present on the date of simulated survey were counted, monthly surveys underestimated the true number of nest starts by 24–64%, depending on species and year. Using a simple model, we also demonstrate that accuracy does not increase much as survey frequency increases, and that significant estimation error can occur over a wide range of nest success values and degrees of asynchrony. We suggest that (1) these biases can be significant for surveys of many kinds of nesting birds including some territorial passerines, (2) this bias cannot be addressed by increasing survey frequency, and (3) the degree of renesting may be of critical interest for inferring breeding population size from nest count data. We suggest three possible approaches for modeling this error.     

Random Partition Models and Exchangeability for Bayesian Identification of Population Structure

We introduce a Bayesian theoretical formulation of the statistical learning problem concerning the genetic structure of populations. The two key concepts in our derivation are exchangeability in its various forms and random allocation models. Implications of our results to empirical investigation of the population structure are discussed.     

Epiphytic fitness of a biological control agent of fire blight in apple and pear orchards under Mediterranean weather conditions

The behaviour of Pseudomonas fluorescens EPS62e was investigated in apple and pear orchards under Mediterranean climatic conditions. The trials studied the influence of weather conditions, plant host species, presence of indigenous microbial community and spread from treated to nontreated trees on colonization and survival. Population dynamics were assessed by real-time PCR and CFU-counting methods. With inoculated flowers, weather conditions were optimal for colonization, and EPS62e established high and stable population levels around 10(8) CFU per organ, according to both methods of analysis. The plant host species did not influence the colonization rate, and the biocontrol agent dominated the microbial communities of blossoms, representing up to 100% of the total cultivable population. With inoculated leaves, the EPS62e population decreased to nondetectable levels 30 days after treatment according to both methods used. EPS62e spread moderately in the orchard, being detected in nontreated flowers of trees 15-35 m from the inoculation site. The combined use of real-time PCR and CFU-counting methods of analysis permitted the identification of three physiological states for EPS62e in the field, which consisted of active colonization, survival and entry into a viable but nonculturable state, and cell death.