Virologica Sinica

正Aims and Scope Virologica Sinica is an academic journal which aims at presenting the cutting-edge basic and applied research on viruses all over the world.The journal publishes peer-reviewed original research articles and reviews,as well as commentaries and letters to the editor,to encompass the latest developments in all branches of virology,including research on animal,plant and microbe viruses.The journal welcomes articles on virus discovery,viral     

Special Issue on "Translational Omics"

正The journal Genomics ProteomicsBioinformatics(GPB)is now inviting submissions for a special issue(to be published in autumn of 2014)on the topic of‘‘Translational Omics’’.     

Micropropagation of strawberry tree (<Emphasis Type="Italic">Arbutus unedo</Emphasis> L.) from adult plants

Arbutus unedo L. is a species of strawberry tree, widely represented in the Mediterranean climates of southern Europe. Fruits are used to make jellies and a spirit called “medronheira.” Shoot apices and nodal segments from epicormic and coppiced shoots of adult plants were used for plant propagation. Shoot apices from epicormic shoots, which were developed in a growth chamber, showed higher rates of in vitro establishment. The results also indicated that shoot apices are more effective for plant establishment than nodal segments, with rates of establishment significantly higher after 12 wk of culture. Of the three basal media used in combination with 9.0 μM benzyladenine and 0.087 M sucrose, the FS medium with the micronutrients of the Murashige and Skoog medium gave the highest rates of multiplication, especially when the parameter analyzed was the number of clusters formed. When shoot apices from selected adult plants (AL01–AL06) were tested, the multiplication rate was not significantly different among the plants. However, in the conditions tested, shoots from the clones AL1, AL2, and AL3 showed better development, whereas shoots from AL4, AL5, and AL6 showed an impaired development and could not be rooted. Rooting was achieved in all the conditions tested, even in the absence of auxin. The inclusion of an auxin significantly increased root formation, whereas the addition of charcoal did not improve root formation. Rooted plantlets were acclimatized, and some of them are now in the field for further study.     

Femtosecond primary charge separation in Synechocystis sp. PCC 6803 photosystem I

The ultrafast (< 100 fs) conversion of delocalized exciton into charge-separated state between the primary donor P700 (bleaching at 705 nm) and the primary acceptor A₀ (bleaching at 690 nm) in photosystem I (PS I) complexes from Synechocystis sp. PCC 6803 was observed. The data were obtained by application of pump-probe technique with 20-fs low-energy pump pulses centered at 720 nm. The earliest absorbance changes (close to zero delay) with a bleaching at 690 nm are similar to the product of the absorption spectrum of PS I complex and the laser pulse spectrum, which represents the efficiency spectrum of the light absorption by PS I upon femtosecond excitation centered at 720 nm. During the first ∼ 60 fs the energy transfer from the chlorophyll (Chl) species bleaching at 690 nm to the Chl bleaching at 705 nm occurs, resulting in almost equal bleaching of the two forms with the formation of delocalized exciton between 690-nm and 705-nm Chls. Within the next ∼ 40 fs the formation of a new broad band centered at ∼ 660 nm (attributed to the appearance of Chl anion radical) is observed. This band decays with time constant simultaneously with an electron transfer to A₁ (phylloquinone). The subtraction of kinetic difference absorption spectra of the closed (state P700⁺A₀A₁) PS I reaction center (RC) from that of the open (state P700A₀A₁) RC reveals the pure spectrum of the P700⁺A₀⁻ ion-radical pair. The experimental data were analyzed using a simple kinetic scheme: An* [(PA₀)*A₁ P⁺A₀⁻A₁] P⁺A₀A₁⁻, and a global fitting procedure based on the singular value decomposition analysis. The calculated kinetics of transitions between intermediate states and their spectra were similar to the kinetics recorded at 694 and 705 nm and the experimental spectra obtained by subtraction of the spectra of closed RCs from the spectra of open RCs. As a result, we found that the main events in RCs of PS I under our experimental conditions include very fast (< 100 fs) charge separation with the formation of the P700⁺A₀⁻A₁ state in approximately one half of the RCs, the ∼ 5-ps energy transfer from antenna Chl* to P700A₀A₁ in the remaining RCs, and ∼ 25-ps formation of the secondary radical pair P700⁺A₀A₁⁻.     

六种泥炭藓形态结构特征对其持水能力的影响

本研究选取贵州都匀市毛尖镇螺蛳壳风景区沼泽湿地的6种泥炭藓属(Sphagnum)植物,分别测量其主茎粗、株高,计数侧枝数和分枝数,并计算其饱和吸水率、外吸水率、内吸水率、透明细胞面积占比、侧枝密度等指标.结果显示:(1)6种泥炭藓饱和吸水率大小依次为狭叶泥炭藓(S.cuspidatum Ehrh)(2518.99％)>...     

国产柽柳科3属6种植物营养枝的解剖观察

对国产柽柳科3属6种植物(琵琶柴、沙生柽柳、山川柽柳、多枝柽柳、刚毛柽柳、疏花水柏枝)营养枝解剖结构的比较研究表明：其当年生营养枝在表皮是否具毛、皮层细胞的形态结构、维管束排列方式、形成层的发生、髓部面积及内含物等性状上存在差异,并根据这些差异列出了分属检索表。所选6种植物生态型各不相同,其中琵琶柴为地带性超旱生小半灌木,柽柳为非地带性的潜水性旱、中生灌木,疏花水柏枝为湿、中生灌木。通过比较这6种植物的解剖结构,发现随着生境由湿生向旱生变化,营养枝解剖结构也发生了相应的变化,并与生境形成了良好的适应。     

Rare genomic characters do not support Coelomata: intron loss/gain

Recently, a new phylogenetic method employing intron positionsharing across species was proposed and support for a Coelomateclade reported (Zheng et al. 2007. A rigorous analysis of thepattern of intron conservation supports the Coelomata cladeof animals. Mol Biol Evol. 24:2583–2592.). Here, we showthat the previous analysis depends on: 1) an idiosyncratic definitionof "conserved" introns, 2) exclusion of all phylogeneticallyinformative introns present in outgroups, 3) incorrect inferenceof change along the critical branch, and 4) lack of variationin rates across branches. The method thus seems unlikely togive accurate results. In addition, we address differences inrates of loss across intron sites, which Zheng et al. claimedinvalidates our previous analysis that supported Ecdysozoa (Royand Gilbert. 2005a. Resolution of a deep animal divergence bythe pattern of intron conservation. Proc Natl Acad Sci USA.102:4403–4408.). Instead, we show that our conclusionsare likely to be robust to such concerns.     

Efficiency of the Neighbor-Joining Method in Reconstructing Deep and Shallow Evolutionary Relationships in Large Phylogenies

The neighbor-joining (NJ) method is widely used in reconstructing large phylogenies because of its computational speed and the high accuracy in phylogenetic inference as revealed in computer simulation studies. However, most computer simulation studies have quantified the overall performance of the NJ method in terms of the percentage of branches inferred correctly or the percentage of replications in which the correct tree is recovered. We have examined other aspects of its performance, such as the relative efficiency in correctly reconstructing shallow (close to the external branches of the tree) and deep branches in large phylogenies; the contribution of zero-length branches to topological errors in the inferred trees; and the influence of increasing the tree size (number of sequences), evolutionary rate, and sequence length on the efficiency of the NJ method. Results show that the correct reconstruction of deep branches is no more difficult than that of shallower branches. The presence of zero-length branches in realized trees contributes significantly to the overall error observed in the NJ tree, especially in large phylogenies or slowly evolving genes. Furthermore, the tree size does not influence the efficiency of NJ in reconstructing shallow and deep branches in our simulation study, in which the evolutionary process is assumed to be homogeneous in all lineages. Received: 7 March 2000 / Accepted: 2 August 2000     

Effect of carbon dioxide, fertilization and irrigation on loblolly pine branch morphology

 Foliage and wood parameters of branches of 12-year-old loblolly pine (Pinus taeda L.) trees were characterized after 21 months of exposure to fertilizer, irrigation and elevated CO₂ treatments. Branches of loblolly pine trees were enclosed in plastic chambers and exposed to ambient, ambient +175 and ambient +350 umol mol^–1 CO₂ concentrations. Measurements of foliage and wood at the fascicle, flush and branch levels were made at the end of the 21 month study period. The +350 CO₂ treatment did not significantly increase fascicle radius or length but did increase the number of fascicles on the first flush. Fertilization significantly increased fascicle radius and length, while irrigation significantly increased number of fascicles and flush length of first flush. The +350 CO₂ treatment also significantly increased flush length of the first flush. Significant interaction of fertilization and irrigation with CO₂ was observed for fascicle length. Significant interactions of fertilization and irrigation were also observed for flush length, number of fascicles and fascicle length. Observed increases in fascicle radius, fascicle length, number of fascicles and flush length may have been responsible for the significantly higher flush leaf area observed for the all three treatments. Also, a combination of fertilization and irrigation increased leaf area by 82% compared to that in the control when averaged across CO₂ treatments. At the branch level +350 CO₂ treatment significantly increased shoot length but not the number of flushes on the branch. In general with the exception of bark density and total number of needle scales, neither fertilization nor irrigation had any significant effect on other branch level parameters. Results from this study indicate that with ‘global change’ an increase in CO₂ alone may increase leaf area via an increase in flush length and number of fascicles. Combining increases in CO₂ with fertilization and irrigation could greatly enhance leaf area which when coupled to observed increases in net photosynthesis as a result of elevated CO₂ could greatly increase productivity of loblolly pine trees. Received: 22 August 1996 / Accepted: 5 March 1997