Archaeal and bacterial diversity in five different hydrothermal ponds in the Copahue region in Argentina

Copahue is an acidic geothermal volcanic region in the northwest corner of Neuquén Province, Argentina. In the area, there are various ponds, pools and hot springs with different temperatures, pH values and levels of anthropogenic influence. In this study, the prokaryotic biodiversity of five representative ponds was studied by using two complementary molecular ecology techniques: phylogenetic analysis of 16S rRNA bacterial and archaeal genes and FISH (or CARD-FISH) for quantitative estimation of biodiversity. The results, supported by multivariate statistical analysis, showed that the biodiversity in Copahue ponds seemed to be determined by temperature. High temperature ponds were dominated by archaea, mainly apparently novel representatives from the orders Sulfolobales and Thermoplasmatales that had no close cultivated relatives. By contrast, moderate temperature ponds were colonised by well-characterised sulphur-oxidising bacteria related to acidic environments, such as other geothermal sites or acid mine drainage, and archaea were absent. By combining the biodiversity results from this study and the reported physicochemical features of Copahue, a preliminary model of the possible biogeochemical interaction was outlined for moderate and high temperature ponds.     

崇明东滩鸟类栖息地优化区越冬水鸟的栖息地利用及影响因子

阐明水鸟栖息地利用与环境因子的关系有助于制定针对性的水鸟保护对策。本研究在2012~2013年冬季对崇明东滩鸟类栖息地优化区内越冬水鸟的种类、数量以及6种环境因子(植被面积比例、裸地面积比例、水深、地形变异、栖息地结构多样性和干扰)进行调查,以了解水鸟对人工湿地的栖息地利用及其影响因子。野外调查共记录到水鸟24种9 018只,其中优势种为斑嘴鸭(Anas poecilorhyncha)和绿头鸭(A.platyrhynchos);栖息地优化区内水鸟休息的个体数量占总数量的79.2%,这表明优化区是大多数水鸟的休息地,而小(Tachybaptus ruficollis)、白骨顶(Fulica atra)、黑水鸡(Gallinula chloropus)、白琵鹭(Platalea leucorodia)和黑脸琵鹭(P.minor)的觅食个体数量超过60%,说明优化区也为这些鸟类提供了觅食地。逐步回归分析表明,裸地面积比例是影响越冬水鸟种类分布的最主要因子;尽管游禽在地形变异较大、植被面积比例较低的区域数量较多,但在休息时游禽更偏好于裸地面积比例较高的区域,而涉禽休息时偏好于地形变异较大的区域。为增加栖息地优化区内的水鸟多样性,建议在优化区内种植水鸟可食的沉水植物以增加水鸟的食物资源,同时增加裸地面积比例和地形变异程度,更好地为水鸟提供栖息地。     

景观水体疏浚底泥的农业利用研究

对运河 (杭州段 )疏浚底泥土地利用的可行性及其生态影响进行了研究 .实验室发芽率测定表明 ,土壤中大量掺入疏浚底泥对种子发芽率有一定的影响 ,但在盆栽中影响很小 .疏浚底泥田间投放量在 2 70t·hm-2 以下 ,对青菜的生长具有促进作用 ,超过 2 70t·hm-2 以上用量对青菜产量有一定影响 .与青菜相比 ,草坪草、园艺花卉对底泥投放量具有更大的耐性 ,表现出明显的促进生长现象 .底泥用量在 10 80t·hm-2 以下时青菜中Cu、Zn含量均未超过食品卫生标准 ,用量为 135 0t·hm-2 时则均超过了标准 .原状土柱淋洗实验发现底泥用量在 4 5 0t·hm-2 以下未造成地下水污染 ,表明运河底泥直接土地利用较一般污水污泥堆肥的危害更小 ,园林投放比农田投放具有更大的可行性 ,土地利用是一种经济可行的疏浚底泥处置方法     

A statistical model of the competition curve

1. A theoretical model for the competition curve, which stands on a few simple assumptions, was proposed.
2. Some applications were done to actual data, and during these applications the validity of the present model and its assumptions was discussed.
3. From the present model it can be expected that there is a discrete competition mechanism even in the appearently continuous medium.

     

Effects of environmental fluctuation on plankton allelopathy

 This paper studies a two-dimensional system that arises in plankton allelopathy involving discrete time delays and environmental fluctuations. The environmental parameters are assumed to be perturbed by white noise characterized by a Gaussian distribution with mean zero and unit spectral density. The dynamic behaviour of the stochastic system is studied and the fluctuations in population are measured both analytically and numerically by computer simulation. Received: 7 September 1998 / Revised version: 14 October 1998     

贵州龙洞和万家洞内部分环境因子与动物群落结构的相关性

分别在2005年的10月和2006年的2月赴遵义龙洞和万家洞对肉眼见到的软体动物、节肢动物和脊索动物进行了观察和采集,在龙洞共获标本454号,隶属3门6纲13目20科29种或类群;在万家洞共获标本1726号,隶属3门7纲11目18科22种或类群。根据两洞内各光带中动物种类和数量组成不同,将其划分为6个动物群落,经群落多样性分析,物种丰富度、群落多样性、最大多样性、均匀度、优势度和相似性指数最高的分别是群落A(3.1932)、C(2.0788)、A(2.8332)、B(0.7828)、E(0.3789)和B-E(1.7854)。此外还研究了部分环境因子与群落多样性的相关性。结果显示,土壤中有机质的含量与群落多样性指数呈极显著正相关,相关系数为0.828(双尾显著性检验≤0.05);空气中CO2的含量与物种数、物种丰富度指数、群落多样性指数、群落最大多样性指数和群落优势度指数都成不显著负相关,相关系数分别为-0.160、-0.263、-0.072、-0.117和-0.031。由此证明土壤有机质的含量和空气中CO2的含量是影响洞穴动物群落变化的重要因子。     

环境微生物宏基因组学研究中的生物信息学方法

高通量测序技术的发展促进了组学技术在环境微生物研究中的广泛应用,而宏基因组学是目前最为关键和成熟的组学方法。生物信息学在微生物宏基因组学研究中具有至关重要的作用。它贯穿于宏基因组学的数据收集和存储、数据处理和分析等各个阶段,既是宏基因组学推广的最大瓶颈,也是目前宏基因组学研究发展的关键所在。本文主要介绍和归纳了目前在高通量宏基因组测序中常用的生物信息学分析平台及其重要的信息分析工具。未来几年之内,测序成本的下降和测序深度的增加将进一步增大宏基因组学研究在数据存储、数据处理和数据挖掘层面的难度,因此相应生物信息学技术与方法的研究和发展也势在必行。近期内我们应该首先加强基础性分析和存储平台的建设以方便普通环境微生物研究者使用,同时针对目前生物信息分析的瓶颈步骤和关键任务重点突破,逐步发展。     

Extraction and Analysis of Microbial Phospholipid Fatty Acids in Soils

Phospholipid fatty acids (PLFAs) are key components of microbial cell membranes. The analysis of PLFAs extracted from soils can provide information about the overall structure of terrestrial microbial communities. PLFA profiling has been extensively used in a range of ecosystems as a biological index of overall soil quality, and as a quantitative indicator of soil response to land management and other environmental stressors.The standard method presented here outlines four key steps: 1. lipid extraction from soil samples with a single-phase chloroform mixture, 2. fractionation using solid phase extraction columns to isolate phospholipids from other extracted lipids, 3. methanolysis of phospholipids to produce fatty acid methyl esters (FAMEs), and 4. FAME analysis by capillary gas chromatography using a flame ionization detector (GC-FID). Two standards are used, including 1,2-dinonadecanoyl-sn-glycero-3-phosphocholine (PC(19:0/19:0)) to assess the overall recovery of the extraction method, and methyl decanoate (MeC10:0) as an internal standard (ISTD) for the GC analysis.