The ‘Coptic question’ in post-revolutionary Egypt: citizenship,democracy, religion

Relations between the Coptic minority and the Egyptian state have gone through different stages, with Copts experiencing greater or lesser degrees of integration into, or alienation from, the social and civil fabric of Egypt. This paper traces the long and ongoing path of the Coptic community from dhimmah to citizenship, a path that is not yet concluded, with a particular focus on the relations between the Copts and Al-Azhar, especially in the transition period opened by the 25 January Revolution. New discourses among both Islamic and Christian intellectuals are examined in order to search out the conceptions of citizenship emerging both in Al-Azhar and Islamist scholars’ thought and in Coptic circles.     

Temporally unpredictable supplementary feeding may benefit endangered scavengers

The monitoring of an experimental feeding station established in northern Spain allowed the evaluation of how this type of resource, predictable in space but not in time, was exploited by a guild of avian scavengers in relation to factors such as season, hour of disposal and presence of the dominant species. The presence of Egyptian Vultures Neophron percnopterus at carcasses was more likely during spring, and richness and diversity of avian scavengers was lower during the summer and when Griffon Vultures Gyps fulvus arrived earlier. The temporal unpredictability of the resource may favour exploitation by smaller and less competitive scavengers. New European regulations may present an opportunity to develop effective conservation measures to support functional scavenger assemblages.     

Multigene Panel Sequencing Reveals Cancer-Specific and Common Somatic Mutations in Colorectal Cancer Patients: An Egyptian Experience

This study aims at identifying common pathogenic somatic mutations at different stages of colorectal carcinogenesis in Egyptian patients. Our cohort included colonoscopic biopsies collected from 120 patients: 20 biopsies from patients with inflammatory bowel disease, 38 from colonic polyp patients, and 62 from patients with colorectal cancer. On top of this, the cohort included 20 biopsies from patients with non-specific mild to moderated colitis. Targeted DNA sequencing using a customized gene panel of 96 colorectal related genes running on the Ion Torrent NGS technology was used to process the samples. Our results revealed that 69% of all cases harbored at least one somatic mutation. Fifty-seven genes were found to carry 232 somatic non-synonymous variants. The most frequently pathogenic somatic mutations were localized in TP53, APC, KRAS, and PIK3CA. In total, 16 somatic mutations were detected in the CRC group and in either the IBD or CP group. In addition, our data showed that 51% of total somatic variants were CRC-specific variants. The average number of CRC-specific variants per sample is 2.4. The top genes carrying CRC-specific mutations are APC, TP53, PIK3CA, FBXW7, ATM, and SMAD4. It seems obvious that TP53 and APC genes were the most affected genes with somatic mutations in all groups. Of interest, 85% and 28% of the APC and TP53 deleterious somatic mutations were located in Exon 14 and Exon 3, respectively. Besides, 37% and 28% of the total somatic mutations identified in APC and TP53 were CRC-specific variants, respectively. Moreover, we identified that, in 29 somatic mutations in 21 genes, their association with CRC patients was unprecedented. Ten detected variants were likely to be novel: six in PIK3CA and four variants in FBXW7. The detected P53, Wnt/βcatenin, Angiogenesis, EGFR, TGF-β and Interleukin signaling pathways were the most altered pathways in 22%, 16%, 12%, 10%, 9% and 9% of the CRC patients, respectively. These results would contribute to a better understanding of the colorectal cancer and in introducing personalized therapies for Egyptian CRC patients.     

Fungi of Orobanche aegyptiaca in Nepal with Potential as Biological Control Agents

A survey of pathogens of the root-parasitic weed Orobanche aegyptiaca Pers. was carried out in Nepal. More than 70% of the fungal strains isolated from infected plants belonged to the genus Fusarium. Other fungi isolated were Acremonium fusidioides, Alternaria alternata, Cladosporium cladosporioides, Epicoccum nigrum, Mortierella alpina, Papulaspora sp., Phoma spp., Sordaria fimicola , Rhizoctonia sp., Trichoderma spp. and Trichothecium roseum.     

Clonal propagation of kurrat (Allium ampeloprasum var. kurrat)

Summary Two protocols for clonal propagation of kurrat (Allium ampeloprasum var.kurrat) using explants from the basal plates of mature plants are described. In direct formation, explants were cultured in Murashige and Skoog (MS) medium and supplemented with either benzyladenine at 0.0 or 4.4 μM, or supplemented with 7.0 μM benzyladenine and 0.1 μM naphthaleneacetic acid. Shoots appeared after 4 wk of culture. In the two-step procedure, explants were cultured first on MS medium supplemented with 1.4 μM 2,4-dichlorophenoxyacetic acid and 1.4 μM kinetin, and incubated in the dark for 4 wk. They were then transferred to MS medium supplemented with 4.4 μM benzyladenine for shoot formation. All shoots were rooted on MS medium containing 5 g·liter⁻¹ activated charcoal. Normal viable plants were successfully established in soil.     

Hidden effects of high numbers of tourists in protected areas: displacement of foraging top scavengers

Protected areas in southern Europe are important for the conservation of large avian scavengers. However, the effects an increasing number of visitors may have on the scavengers' patterns of movement are unknown. Here, we took advantage of data collected from seven GPS-tagged adult Griffon Vultures Gyps fulvus breeding in the Bardenas Reales Natural Park in northern Spain to determine whether foraging birds moved to more remote areas on the days when the number of visitors increased. We found that although the number of visitors did appear to affect movement patterns, this had a smaller effect size compared with the mean temperature of the day. Additionally, males moved further than females. If the number of visitors to natural areas continues to increase, local exclusions of Griffon Vultures may become more common, so further research is needed to address the potential consequences for the scavenger population and ecosystem functions and services they provide.     

Glucose-6-phosphate dehydrogenase deficiency and sulfadimidin acetylation phenotypes in Egyptian oases

Screening of 1315 males from two Egyptian oases for glucose-6-phosphate dehydrogenase deficiency (G-6PD) found an incidence of 5.9%. The rate of acetylation of sulfadimidin was also studied, and a bimodal distribution was found with 73% rapid acetylators. There is a correlation between high frequency of G-6PD deficiency and high frequency of slow acetylation rate. This work was supported by a grant from the International Center of Agricultural Research in the Dry Areas (ICARDA), Nile Valley project of faba beans.     

Infection of tubercles of the parasitic weed Orobanche aegyptiaca by mycoherbicidal Fusarium species

Progression of the infection by host-specific strains of Fusarium oxysporum and Fusarium arthrosporioides of Orobanche aegyptiaca (Egyptian broomrape) tubercles attached to tomato roots was tracked using light, confocal and electron microscopy. Mycelia transformed with the gene for green fluorescent protein were viewed using a confocal microscope. Fungal penetration was preceded by a rapid loss of starch, with approx. 10 % remaining at 9 h and no measurable starch at 24 h. Penetration into the Orobanche tubercles began by 12 h after inoculation. Hyphae penetrated the outer six cell layers by 24 h, reaching the centre of the tubercles by 48 h and infecting nearly all cells by 72 h. Most of the infected tubercles were dead by 96 h. Breakdown of cell walls and the disintegration of cytoplasm in and around the infected cells occurred between 48 and 96 h. Lignin-like material increased in tubercle cells of infected tissues over time, but did not appear to be effective in limiting fungal penetration or spread. Callose, suberin, constitutive toxins and phytoalexins were not detected in infected tubercles, suggesting that there are no obvious defence mechanisms to overcome. Both Fusarium spp. pathogenic on Orobanche produced fumonisin-like ceramide synthase inhibitors, while fusaric acid was produced only by F. oxysporum in liquid culture. The organisms do not have sufficient virulence for field use (based on glasshouse testing), suggesting that virulence should be transgenically enhanced or additional isolates sought.     

Further studies of crania from ancient northern Africa: an analysis of crania from first dynasty Egyptian tombs, using discriminant functions.

An analysis of First Dynasty crania from Abydos was undertaken using multiple discriminant functions. The results demonstrate greater affinity with Upper Nile Valley patterns, but also suggest change from earlier craniometric trends. Gene flow and movement of northern officials to the important southern city may explain the findings.