Different modelling tools of aquatic ecosystems: A proposal for a unified approach

Over the last few decades, several modelling tools have been developed for the simulation of hydrodynamic and biogeochemical processes in aquatic ecosystems. Until late 70's, coupling hydrodynamic models to biogeochemical models was not common and today, problems linked to the different scales of interest remain. The time scale of hydrodynamic phenomena in coastal zone (minutes to hours) is much lower than that of biogeochemistry (few days). Over the last years, there has been an increasing tendency to couple hydrodynamic and biogeochemical models in a clear recognition of the importance of incorporating in one model the feedbacks between physical, chemical and biological processes. However, different modelling teams tend to adopt different modelling tools, with the result that benchmarking exercises are sometimes difficult to achieve in projects involving several institutions. Therefore, the objectives of this paper are to provide a quick overview of available modelling approaches for hydrodynamic and biogeochemical modelling, to help people choose among the diversity of available models, as a function of their particular needs, and to propose a unified approach to allow modellers to share software code, based on the object oriented programming potentiality. This approach is based on having object dynamic link libraries that may be linked to different model shells. Each object represents different processes and respective variables, e.g. hydrodynamic, phytoplankton and zooplankton objects. Some simple rules are proposed to link available objects to programs written in different source codes.     

Ecotourism and ecological restoration

The fast pace of tourism development around the world is causing untold damage to some of the most endangered ecological systems. From Dubai to Honolulu and from Cancun to Beijing, the environmental impacts of tourism are alarming. Ecological restoration (ER) of disturbed lands should be an important approach to sensitive tourism planning. This paper addresses the need for restoring biodiversity and how ecotourism has shown to be a strong force in the field of ER. Two examples (one each of private and community based ecotourism) incorporating ER will be highlighted in this paper: Phinda Game Reserve, South Africa and the Baboon Sanctuary in Belize. We call for greater dialogue across disciplines, notably ER, conservation science and ecotourism.     

转基因(Cry1Ac)抗虫棉对土壤微生物的影响

对不同种植年限的转基因(Cry1Ac)抗虫棉田土壤中主要微生物数量变化进行了测定,结果表明：（1）种植转基因抗虫棉后对土壤微生物细菌、放线菌和真菌数量的影响趋势基本相似;（2）种植抗虫棉1年后,土壤中细菌、放线菌、真菌数量将有所增加,连续4年达到高峰,然后数量开始下降,连续种植7年后,棉田微生物数量接近于种植1年的棉田;（3）种植1年后又种植非转基因棉花的棉田,土壤微生物数量低于种植1年抗虫棉的棉田,与种植非转基因棉的数量无明显差异。由此可见,种植转基因抗虫棉对土壤微生物数量有一定的影响。     

持久性有机污染物污染及其防治

随着化学工业的快速发展,持久性有机污染物（POPs）的污染愈来愈成为突出的环境问题,对生态和人体健康构成严重威胁。文章从生物学的角度,对POPs的特性、分布和对动物与人体健康的危害等方面作了简要的介绍。对POPs污染与危害,提出了相应的治理措施。     

Diverse rhizobia associated with Sophora alopecuroides grown in different regions of Loess Plateau in China

A total of seventy-five symbiotic bacterial strains isolated from root nodules of wild Sophora alopecuroides grown in different regions of China's Loess Plateau were characterized. Based on the combined RFLP patterns, thirty-five genotypes were defined among the rhizobia and they were classified into nine genomic species, including Mesorhizobium alhagi and M. gobiense as the main groups, as well as Agrobacterium tumefaciens, M. amorphae, Phyllobacterium trifolii, Rhizobium giardinii, R. indigoferae, Sinorhizobium fredii and S. meliloti as the minor groups according to the 16S rRNA and recA gene analyses. Five and three lineages of nodA and nifH were found, respectively, in these strains, implying that the symbiotic genes of the S. alopecuroides rhizobia had different origins or had divergently evolved. Results of correspondence analysis showed that there was a correlation between rhizobial genotypes and the geographic origins. Possible lateral transfer of the recA and 16S rRNA genes between the P. trifolii and A. tumefaciens strains, and that of symbiotic genes (nodA, nifH) between different genera, was shown by discrepancies of the phylogenetic relationships of the four gene loci. These results revealed diverse rhizobia associated with wild S. alopecuroides grown in different regions of China's Loess Plateau, and demonstrated for the first time the existence of symbiotic A. tumefaciens strains in root nodules of S. alopecuroides.     

钻形紫菀开花期种群构件的生物量分配

在野外用样方法,选取60株钻形紫菀(Aster subulatus Michx.)开花植株,进行根、茎、叶及花等构件的生物量及其物质分配关系的研究.结果表明:钻形紫菀开花期构件生物量为茎>花>根>叶,其变异系数分别为57.15%、64.66%、57.65%和55.2%,具有较大表型可塑性;在各构件物质分配变异系数中,花生物量分配的变异系数相对较大,说明其调节生殖分配的能力较强;植株高度与各构件生物量呈显著的正相关性,随着各构件生物量的增加均呈幂函数形式增加;花生物量分配与总生物量呈显著的正相关性,其余构件生物量分配均与总生物量及花生物量分配呈负相关性,物质分配由营养构件、支持构件、光合构件向生殖构件转移.反映出钻形紫菀具有自我调节生长力的分配策略,对异质环境具有较强适应能力.     

Benthic colonization and succession on temperate sublittoral rocky cliffs

Patterns of benthic colonization and succession were investigated on a temperate rocky cliff (Aegean Sea, Eastern Mediterranean). Cement and ceramic panels deployed on the rocky substratum at 25-30 m depth were sampled every 3 months over a 2-year period yielding 28 floral and 156 animal species. Diversity, cover and abundance had low values at short immersion periods and increased at the long ones. The vagile fauna responded to the increasing habitat complexity offered by the development of algal turfs and sessile species, and the community structure remained highly dynamic. Unlike the duration of immersion, the type of substratum didn't affect species colonization except for decapods that showed a preference for cement panels. Three to four stages of succession were recorded over immersion periods, according to vagile and sessile biota, respectively, during which species richness and abundance increased. The structure of the developed communities on both artificial materials differed from the natural algal-dominated benthic community of the same area, suggesting that the recovery of rocky shore communities on temperate cliffs is time consuming.     

THE BIOLOGY OF SPECIATION

Since Darwin published the “Origin,” great progress has been made in our understanding of speciation mechanisms. The early investigations by Mayr and Dobzhansky linked Darwin's view of speciation by adaptive divergence to the evolution of reproductive isolation, and thus provided a framework for studying the origin of species. However, major controversies and questions remain, including: When is speciation nonecological? Under what conditions does geographic isolation constitute a reproductive isolating barrier? and How do we estimate the “importance” of different isolating barriers? Here, we address these questions, providing historical background and offering some new perspectives. A topic of great recent interest is the role of ecology in speciation. “Ecological speciation” is defined as the case in which divergent selection leads to reproductive isolation, with speciation under uniform selection, polyploid speciation, and speciation by genetic drift defined as “nonecological.” We review these proposed cases of nonecological speciation and conclude that speciation by uniform selection and polyploidy normally involve ecological processes. Furthermore, because selection can impart reproductive isolation both directly through traits under selection and indirectly through pleiotropy and linkage, it is much more effective in producing isolation than genetic drift. We thus argue that natural selection is a ubiquitous part of speciation, and given the many ways in which stochastic and deterministic factors may interact during divergence, we question whether the ecological speciation concept is useful. We also suggest that geographic isolation caused by adaptation to different habitats plays a major, and largely neglected, role in speciation. We thus provide a framework for incorporating geographic isolation into the biological species concept (BSC) by separating ecological from historical processes that govern species distributions, allowing for an estimate of geographic isolation based upon genetic differences between taxa. Finally, we suggest that the individual and relative contributions of all potential barriers be estimated for species pairs that have recently achieved species status under the criteria of the BSC. Only in this way will it be possible to distinguish those barriers that have actually contributed to speciation from those that have accumulated after speciation is complete. We conclude that ecological adaptation is the major driver of reproductive isolation, and that the term “biology of speciation,” as proposed by Mayr, remains an accurate and useful characterization of the diversity of speciation mechanisms.     

Designing a “tailor-made” ecological network using geographical information systems

During the last few years, geographical information systems (GIS) have spread as powerful tools for landscape analysis. The main purpose of this work was to use GIS to display an ecological network made up of core areas, key areas and ecological corridors. As an example of the application of this method we refer to the population of deer (Cervus elaphus) and roe deer (Capreolus capreolus) in an alpine area in northwestern Italy. The method provided an overall view of the ecological network of the area, highlighting how linear infrastructures can affect animal populations and consequently, their survival probability.     

Responses of antennal campaniform sensilla to rapid temperature changes in ground beetles of the tribe platynini with different habitat preferences and daily activity rhythms

Responses of temperature sensitive (cold) cells from the antenna of ground beetles (tribe Platynini) were compared in species with different ecological preferences and daily activity rhythms. Action potential rates were characterized at various temperatures (ranges 23-39 degrees C) and during rapid changes in it (Deltat=0.5-15 degrees C). The stationary firing frequencies were nearly twice as high in eurythermic open field ground beetles Agonum muelleri and Anchomenus dorsalis (firing rates ranging from 22 to 47imp/s) than in a stenothermic forest species Platynus assimilis. In the eurythermic species, the firing rate did not significantly depend on temperature (Anchomenus dorsalis range of 23-27 degrees C and Agonum muelleri range of 23-33 degrees C) but plots of firing rate versus temperature showed rapid declines when lethally high temperatures were approached. In contrast, a nearly linear decline of the firing rate/temperature curve was observed in Platynus assimilis. Responses to rapid temperature decreases were also considerably higher in eurythermic species. Both the peak frequency of the initial burst (maximum 420-650Hz) as well as the sustained discharge in the first 4s of the response were higher than in Platynus assimilis. Long silent periods, lasting up to several seconds, that occurred at the beginning of the response to rapid warming were significantly shorter in Agonum muelleri and Anchomenus dorsalis compared to Platynus assimilis. These findings suggest that the responses of thermoreceptors to temperature changes may be correlated with specific ecological preferences.