A rapid ecological network assessment tool and its use in locating habitat extension areas in a changing landscape

An understanding of the ecological systems which dictate landscape form and function must be achieved in order to objectively view development led landscape ecological change. Habitat fragmentation, loss and isolation of habitat patches and reduced connectivity are having a significant detrimental effect on the way our landscapes function. A conservation planning tool which considers these issues in tandem with planned landscape level change, whilst incorporating species and habitat specific details, is necessary if we are to ameliorate the ecological impact of built development.A landscape scale modelling approach was developed for a case study area in the South Midlands of the UK to investigate spatial targeting of habitat extension areas. Habitat extension opportunities currently arise as a consequence of existing planning regulations and conditions and are likely to increase as the concept of habitat “banking” is embraced. Ecological networks and ecoprofiles were employed to guide the location of these extension areas via an examination of the landscape ecology effects of area composition, size and location. The ability of extension areas to contribute to landscape functionality was determined spatially. Habitat extension areas identified by the approach increased the existing ecological network size by a factor of over 2.7:1 and were able to deliver the majority of habitat creation targets set out in regional Biodiversity Action Plans (BAPs). 100% of wetland, unimproved grassland and broadleaf and mixed woodland creation targets were met, whilst 75% of the lowland heath target could be achieved. Semi-natural habitat mosaic areas of over 3700 ha which incorporated habitat of more than one type were identified, with such areas determined to be of importance in achieving landscape improvements for a wide range of species. We conclude that rapid assessment tools such as that employed in this research will have increased utility in conservation planning as the British landscape continues to experience both sustained and elevated levels of built development pressure.     

Relationships between benthic macrofauna and biogeochemical properties of sediments at different spatial scales and among different habitats in mangrove forests

In muddy intertidal sediments, there are reported complex interactions between the biological, physical and chemical properties of the sediment and the benthos that live in and on it. These are expected to be reflected in strong relationships between benthic animals and particular properties of the sediment, although some research has shown these relationships to be relatively weak. This study investigates the relationships between benthic macrofauna and biogeochemical properties of sediments within and among different habitats in multiple mangrove forests in a temperate estuary, in order to address the generality of any such relationships. Matched samples of benthos and sediment were collected from three habitats, which differed with respect to shading, the amounts of algae and leaf litter and the presence of pneumatophores. The sediment was sampled for water content, grain size, organic matter, chlorophylls a and b and colloidal and total carbohydrate.Spatial variation in sediment and benthos were significantly correlated across habitats in two of the three bays, but the sediment properties that contributed to differences between habitats and those that best correlated with the benthos varied among bays. In all bays, the single taxon that best correlated with the sediment was spionid polychaetes, but correlations were generally weak. There was no generality in the patterns of variation among the benthos or sedimentary properties among habitats. The benthos differed significantly among bays in all habitats, with large variation within and among sites. The sediment varied significantly at small scales in all habitats, but significant differences among bays were only found in two habitats. All spatial scales contributed to the total amount of variability in the sediment and there was little predictability from the patterns shown in one habitat to those in other habitats, or from one component of sediment to other components. Such variability suggests that there may be structural redundancy in this fauna, with different components of the benthos contributing to similar functions in different places. Such variability must be considered in experiments designed to understand relationships between ecological structure and function in these complex habitats and in any sampling studies to identify environmental impacts in these habitats.     

硒对水稻的生态毒理效应及临界指标研究

通过土壤添加硒盆栽试验,研究了黄棕壤不同浓度Se对水稻生物量、叶绿素含量、抗氧化酶系统的影响.结果表明,低浓度Se(<8mg·kg^-1)对水稻根和地上生物量、叶绿素a含量、叶绿素a/b有促进作用,并整体提高了作物抗氧化酶系统,使MDA下降,SOD、CAT、POD、GSHPx活性相应提高.而高浓度Se(>16mg·kg^-1)对水稻根和地上生物量、叶绿素a含量、叶绿素a/b有明显的抑制作用,对抗氧化酶系统产生胁迫效应,使GSHPx明显上升,MDA上升,SOD、CAT、POD酶活性明显下降.各项生理指标与土壤Se处理浓度之间相关分析表明,土壤Se浓度与地上部干重相对百分率、根干重百分率、叶绿素a/b、MDA、SOD、CAT、POD之间有显著相关性.比较胁迫效应10%值的临界指标EC10值表明,作物地上部干重抑制率作为土壤临界值制定的依据更为可靠,EC10为21mg·kg^-1.     

黄土高原小流域生态-经济重建模式的尺度概念和方法

对黄土高原地区11个水土保持和生态重建科研攻关试验区近20年的研究结果表明,试区设置的区划尺度过粗和小流域治理典型尺度过小,缺乏中尺度研究和不同尺度间模式及内容转换的方法,是典型模式推广不理想的一个重要原因．针对小流域治理在尺度上的局限性,提出相似度尺度推绎和多尺度互补研究等设想,并进行了初步的研究．     

生态因子对柑桔果实品质的影响

综述了柑桔果实主要品质因素(色泽、有机酸和糖)的生理基础,以及温度、光照、水分、土壤和地形地貌等主要生态因子对柑桔果实品质影响的研究概况,阐述了柑桔生态学研究存在的问题和今后的研究方向,并对我国柑桔品质区划方法提出了建议．     

持久性有机污染物污染及其防治

随着化学工业的快速发展,持久性有机污染物（POPs）的污染愈来愈成为突出的环境问题,对生态和人体健康构成严重威胁。文章从生物学的角度,对POPs的特性、分布和对动物与人体健康的危害等方面作了简要的介绍。对POPs污染与危害,提出了相应的治理措施。     

Increasing the potency of neutralizing single-domain antibodies by functionalization with a CD11b/CD18 binding domain

Recombinant single domain antibodies (nanobodies) constitute an attractive alternative for the production of neutralizing therapeutic agents. Their small size warrants rapid bioavailability and fast penetration to sites of toxin uptake, but also rapid renal clearance, which negatively affects their performance. In this work, we present a new strategy to drastically improve the neutralizing potency of single domain antibodies based on their fusion to a second nanobody specific for the complement receptor CD11b/CD18 (Mac-1). These bispecific antibodies retain a small size (?30 kDa), but acquire effector functions that promote the elimination of the toxin-immunocomplexes. The principle was demonstrated in a mouse model of lethal toxicity with tetanus toxin. Three anti-tetanus toxin nanobodies were selected and characterized in terms of overlapping epitopes and inhibition of toxin binding to neuron gangliosides. Bispecific constructs of the most promising monodomain antibodies were built using anti Mac-1, CD45 and MHC II nanobodies. When co-administered with the toxin, all bispecific antibodies showed higher toxin-neutralizing capacity than the monomeric ones, but only their fusion to the anti-endocytic receptor Mac-1 nanobody allowed the mice to survive a 10-fold lethal dose. In a model of delayed neutralization of the toxin, the anti- Mac-1 bispecific antibodies outperformed a sheep anti-toxin polyclonal IgG that had shown similar neutralization potency in the co-administration experiments. This strategy should have widespread application in the development of nanobody-based neutralizing therapeutics, which can be produced economically and more safely than conventional antisera.     

Cuticular wax composition of Salix varieties in relation to biomass productivity

The leaf cuticular waxes of six Salix clones (one Salix miyabeana, one Salix dasyclados, one Salix eriocephala, two Salix purpurea, and one interspecific hybrid of Salix eriocephala x interior) with different biomass productivities were characterized by gas chromatography-mass spectrometry. Total wax content ranged from 6.3 to 16.8 microg cm(-2), and two distinct patterns of wax were measured. The wax from leaves of S. dasyclados 'SV1' differed from all other clones and was dominated by fatty acids (42%), high concentrations of n-alkanes (25%) and n-alcohols (28%), with low n-aldehyde content (4%). All other clones produced cuticular wax dominated by n-alcohols (32-51%), particularly 1-hexacosanol, with fatty acids (14-37%) and n-aldehydes (19-26%) present in lower abundances. Clones of Salix grown under identical environmental conditions produce noticeably different amounts of cuticular wax. In contrast to previous studies of Salix, total wax content was independent of biomass productivity, measured as basal area, suggesting that wax production is not directly linked with woody biomass production by shrub willows under these site conditions.     

内蒙古锡林河流域草原群落植物功能群组成沿水热梯度变化的样带研究

 用样带法调查了草原群落植物功能群组成沿水热梯度的变化。结果表明,随着海拔高度的降低,降水量的减少,热量和干燥度的增加,群落植物生活型功能群组成中,多年生杂类草的相对多度逐渐减少,而多年生丛生禾草的相对多度逐渐增加,多年生丛生禾草对多年生杂类草具有强烈的生态替代作用。在植物生态类群功能群组成中,中旱生植物的作用逐渐减弱,而旱生植物的作用显著增强。草地的利用方式对群落组成具有重要的影响,永久样地和割草场中不耐牧种的相对生物量显著地高于放牧场,而放牧场中耐牧种的相对生物量则显著地高于永久样地和割草场。受草地利用     

A novel method for predicting and using distance constraints of high accuracy for refining protein structure prediction

The principal bottleneck in protein structure prediction is the refinement of models from lower accuracies to the resolution observed by experiment. We developed a novel constraints‐based refinement method that identifies a high number of accurate input constraints from initial models and rebuilds them using restrained torsion angle dynamics (rTAD). We previously created a Bayesian statistics‐based residue‐specific all‐atom probability discriminatory function (RAPDF) to discriminate native‐like models by measuring the probability of accuracy for atom type distances within a given model. Here, we exploit RAPDF to score (i.e., filter) constraints from initial predictions that may or may not be close to a native‐like state, obtain consensus of top scoring constraints amongst five initial models, and compile sets with no redundant residue pair constraints. We find that this method consistently produces a large and highly accurate set of distance constraints from which to build refinement models. We further optimize the balance between accuracy and coverage of constraints by producing multiple structure sets using different constraint distance cutoffs, and note that the cutoff governs spatially near versus distant effects in model generation. This complete procedure of deriving distance constraints for rTAD simulations improves the quality of initial predictions significantly in all cases evaluated by us. Our procedure represents a significant step in solving the protein structure prediction and refinement problem, by enabling the use of consensus constraints, RAPDF, and rTAD for protein structure modeling and refinement. Proteins 2009. © 2009 Wiley‐Liss, Inc.