Rate of succession in restored wetlands and the role of site context

Question: Are changes in plant species composition, functional group composition and rates of species turnover consistent among early successional wetlands, and what is the role of landscape context in determining the rate of succession? Location: Twenty‐four restored wetlands in Illinois, USA. Methods: We use 4 years of vegetation sampling data from each site to describe successional trends and rates of species turnover in wetlands. We quantify: (1) the rate at which composition changes from early‐successional to late‐successional species and functional groups, as indicated by site movement in ordination space over time, and (2) the rate of change in the colonization and local extinction of individual species. We correlate the pace of succession to site area, isolation and surrounding land cover. Results: Some commonalities in successional trends were evident among sites. Annual species were replaced by clonal perennials, and colonization rates declined over time. However, differences among sites outweighed site age in determining species composition, and the pace of succession was influenced by a site's landscape setting. Rates of species turnover were higher in smaller wetlands. In addition, wetlands in agricultural landscapes underwent succession more rapidly, as indicated by a rapid increase in dominance by late‐successional plants. Conclusions: Although the outcome of plant community succession in restored wetlands was somewhat predictable, species composition and the pace of succession varied among sites. The ability of restoration practitioners to accelerate succession through active manipulation may be contingent upon landscape context.     

入侵种小管福寿螺对本土物种梨形环棱螺的生态挤压作用

在世界范围内,物种入侵正成为一个影响经济发展、公众健康的重大生态事件.为了探究入侵物种小管福寿螺(Pomacea canaliculata)对本土近生态位物种的生态挤压作用,选择了梨形环棱螺(Bellamya purificata)作为受试动物,设置直接生态竞争实验和间接分泌物胁迫实验两类实验.直接生态竞争实验中两种螺...     

长白山阔叶红松林主要树种对干旱胁迫的生态反应及生物量分配的初步研究

以组成长白山温带阔叶红松林主要树种红松,水曲柳,胡桃楸,椴树和蒙古柞的幼苗,盆载于土壤含水量分别为田间持水量的85％－100％（CK）,65％－85％（MW）和45％－65％（LW）条件下4个月,研究不同土壤水分亏缺对不同树种生态反应和生物量再分配,结果表明,干旱处理显著降低供试树种的单叶面积,侧根数,根长等,降低叶比重,增加根比重,不同种对干旱响应应存在明显差异,椴树和水曲柳叶比重随水分亏缺的加剧而显著降低,蒙古柞和胡桃揪叶比重值在轻度水分亏缺时达到最高,但不同树种幼树茎比重并不随土壤水分含量的降低而发生明显变化,各树种生物量较对照组有显著差异,椴树,水曲柳,胡桃揪,红松幼树总生物量平均降低32．8,43．6,26．2和23．8％,蒙古柞幼 树生物量平均增加4．8％,耐旱性比其它4个供试树种强。     

利用酵母双杂交系统筛选与黄瓜花叶病毒外壳蛋白互作的寄主蛋白

利用酵母双杂交系统,以黄瓜花叶病毒(Cucumber mosaic virus,CMV)的外壳蛋白(coat protein,CP)为诱饵,从番茄叶片c DNA文库中筛选与其互作的蛋白。结果显示,诱饵载体pBT3-SUC-CMV-CP均能在酵母细胞中正确表达,无自激活活性而且对酵母无毒性;通过对酵母双杂交文库的筛选和回转验证,共获得了98个阳性克隆,分别编码67个可能与CMV-CP相互作用的蛋白,分别参与植物防御反应、光合作用、物质转运、信号转导、能量代谢、氨基酸代谢、细胞壁的形态建成、植物的激素代谢等。本研究结果表明,CMV CP可同时调控寄主的多个代谢过程,在CMV的致病过程中有多重功能。     

重金属复合污染对土壤植物系统的生态效应Ⅱ.对作物、苜蓿、树木吸收元素的影响

研究Cd、Pb、Cu、Zn、As 5元素复合污染对农作物、苜蓿、树木吸收元素的影响,供试污染物浓度以接近国内外土壤环境标准值作为高剂量处理,结果表明,5种元素间存在交互作用,可提高作物对Cd、Pb、Zn吸收系数,籽实超出粮食卫生标准的超标率在低剂量处理时Cd为16.6～42.85%,高剂量时达16.6～71.42%.苜蓿茎叶中Cd、Pb含量超出饲料卫生标准,树叶中含量也有所增加,在中、酸性土壤上尤甚.     

A Bipartite Network-based Method for Prediction of Long Non-coding RNA–protein Interactions

As one large class of non-coding RNAs(nc RNAs), long nc RNAs(lncRNAs) have gained considerable attention in recent years. Mutations and dysfunction of lnc RNAs have been implicated in human disorders. Many lnc RNAs exert their effects through interactions with the corresponding RNA-binding proteins. Several computational approaches have been developed, but only few are able to perform the prediction of these interactions from a network-based point of view. Here,we introduce a computational method named lnc RNA–protein bipartite network inference(LPBNI). LPBNI aims to identify potential lnc RNA–interacting proteins, by making full use of the known lnc RNA–protein interactions. Leave-one-out cross validation(LOOCV) test shows that LPBNI significantly outperforms other network-based methods, including random walk(RWR)and protein-based collaborative filtering(Pro CF). Furthermore, a case study was performed to demonstrate the performance of LPBNI using real data in predicting potential lnc RNA–interacting proteins.     

Protein-protein interactions between two-component system transmitter and receiver domains of Myxococcus xanthus

We present a novel dataset assessing the specificity of protein-protein interactions between 69 transmitter and receiver domains from two-component system (TCS)-signalling pathways. TCS require a conserved protein-protein interaction between partner transmitter and receiver domains for signal transduction. The complex prokaryote Myxococcus xanthus possesses an unusually large number of TCS genes, many of which have no obvious interaction partners. Interactions between TCS domains of M. xanthus were assessed using a yeast two-hybrid assay, in which domains were expressed as both bait and prey translational fusions. LacZ production was monitored as an indicator of protein-protein interaction, and the strength of interactions classified as weak, medium or strong. Two-hundred and fifty-five transmitter-receiver domain interactions were observed (46 strong), allowing identification of potential signalling partners for individual M. xanthus TCS proteins. In addition, the dataset provides interesting 'meta' information. For instance, many strong interactions were identified between different transmitter domain pairs (34) and receiver domain pairs (23), suggesting a surprisingly large degree of heterodimerisation of these domains. Proteins in our dataset that exhibited similar 'profiles' of interactions, often shared a similar biological function, suggesting that interaction profiles can provide information on biological function, even considering sets of homologous domains.     

辽西大凌河流域生态安全评价

生态安全包括自然生态安全、经济生态安全和社会生态安全,尤指自然和半自然生态系统的安全,即生态系统完整性和健康的整体水平反映.通过专家评议,从生态系统的状态-压力-效应3个方面选取28项指标,对辽西大凌河流域不同时期的生态安全进行综合评价.结果表明,1987年(7.48)与2002年(7.51)大凌河流域生态安全处于良好状态,但2002年面临的生态压力比1987年增加了32.5%.1987～2002年大凌河流域生态安全水平没有显著下降的主要原因是朝阳市政府实施了大规模的小流域治理.大凌河流域2002年生态状态和生态效应分别是1987年1.29和1.42倍.     

Analysis of over-consumption of natural resources and the ecological trade deficit in China based on ecological footprints

China has experienced unprecedented economic development in recent years and is now facing severe challenges caused by the over-consumption of resources and by ecological and environmental degradation. To assess the influence of resource exploitation and ecological trade, we have developed an index of excessive resource consumption based on the concepts of ecological deficit and ecological over-shoot, and we have used the ecological trade deficit to assess the pressure created by the export and import of resources and products. Our analysis indicated that China's consumption footprint surpassed its biocapacity in 1983, leading to an ecological deficit, and the production footprint surpassed its biocapacity in 1986, leading to an ecological over-shoot, as the over-consumption of natural resources grew. By 2010, 3.6 times the current area of bioproductive land was needed to provide sufficient resources to meet the consumption. China has been encouraging the development of exporting enterprises by implementing a series of financial and tax incentives, which have stimulated the economy in the short-term but have gradually increased the ecological trade deficit since 2000.     

Substrate Binding Mechanism of a Type I Extradiol Dioxygenase

A meta-cleavage pathway for the aerobic degradation of aromatic hydrocarbons is catalyzed by extradiol dioxygenases via a two-step mechanism: catechol substrate binding and dioxygen incorporation. The binding of substrate triggers the release of water, thereby opening a coordination site for molecular oxygen. The crystal structures of AkbC, a type I extradiol dioxygenase, and the enzyme substrate (3-methylcatechol) complex revealed the substrate binding process of extradiol dioxygenase. AkbC is composed of an N-domain and an active C-domain, which contains iron coordinated by a 2-His-1-carboxylate facial triad motif. The C-domain includes a β-hairpin structure and a C-terminal tail. In substrate-bound AkbC, 3-methylcatechol interacts with the iron via a single hydroxyl group, which represents an intermediate stage in the substrate binding process. Structure-based mutagenesis revealed that the C-terminal tail and β-hairpin form part of the substrate binding pocket that is responsible for substrate specificity by blocking substrate entry. Once a substrate enters the active site, these structural elements also play a role in the correct positioning of the substrate. Based on the results presented here, a putative substrate binding mechanism is proposed.