Environmental controls over carbon exchange of three forest ecosystems in eastern China

Net ecosystem productivity (NEP) was continuously measured using the eddy covariance (EC) technique from 2003 to 2005 at three forest sites of ChinaFLUX. The forests include Changbaishan temperate mixed forest (CBS), Qianyanzhou subtropical coniferous plantation (QYZ), and Dinghushan subtropical evergreen broad‐leaved forest (DHS). They span wide ranges of temperature and precipitation and are influenced by the eastern Asian monsoon climate to varying extent. In this study, we estimated ecosystem respiration (RE) and gross ecosystem productivity (GEP). Comparison of ecosystem carbon exchange among the three forests shows that RE was mainly determined by temperature, with the forest at CBS exhibiting the highest temperature sensitivity among the three ecosystems. The RE was highly dependent on GEP across the three forests, and the ratio of RE to GEP decreased along the North–South Transect of Eastern China (NSTEC) (i.e. from the CBS to the DHS), with an average of 0.77 ± 0.06. Daily GEP was mainly influenced by temperature at CBS, whereas photosynthetic photon flux density was the dominant factor affecting the daily GEP at both QYZ and DHS. Temperature mainly determined the pattern of the interannual variations of ecosystem carbon exchange at CBS. However, water availability primarily controlled the interannual variations of ecosystem carbon exchange at QYZ. At DHS, NEP attained the highest values at the beginning of the dry seasons (autumn) rather than the rainy seasons (summer), probably because insufficient radiation and frequent fog during the rainy seasons hindered canopy photosynthesis. All the three forest ecosystems acted as a carbon sink from 2003 to 2005. The annual average values of NEP at CBS, QYZ, and DHS were 259 ± 19, 354 ± 34, and 434 ± 66 g C m⁻² yr⁻¹, respectively. The slope of NEP that decreased with increasing latitude along the NSTEC was markedly different from that observed on the forest transect in the European continent. Long‐term flux measurements over more forest ecosystems along the NSTEC will further help verify such a difference between the European forest transect and the NSTEC and provide insights into the responses of ecosystem carbon exchange to climate change in China.     

Biogeography and diversity among montane populations of mouse shrew (Soricidae: Myosorex) in Tanzania

We assess variation in morphological and molecular characters among three species of Myosorex (the mouse shrew) –Myosorex geata, Myosorex kihaulei, and Myosorex zinki– as a means to test previously proposed biogeographic hypotheses for Tanzanian ‘sky islands’ and systematic hypotheses for Tanzanian mouse shrews. We analyse 17 cranial and dental variables using multivariate statistics and perform phylogenetic and phylogeographic analyses on sequences of mitochondrial and nuclear DNA; samples are drawn from every known Tanzanian population of Myosorex. Morphometric and phylogenetic analyses reveal that M. zinki is distinct, but that currently isolated populations of M. geata and M. kihaulei are relatively similar to one another, and may not have been isolated over geological time scales. Analyses of molecular variance identify statistically significant, but limited, genetic variation within and between isolated populations of M. geata and M. kihaulei. Between two putative regional biogeographic boundaries, greater genetic variation is explained by grouping populations on either side of the Ruaha River than by grouping populations on either side of the Makambako Gap. Our results are in agreement with recent studies illustrating the close relationship between faunas of the Southern Highlands and southern Eastern Arc Mountains, diminishing the apparent importance of the Makambako Gap as a historical biogeographic barrier. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100 , 669–680.     

Historic log structures as ecological archives: A case study from eastern North America

Forests of eastern North America have undergone abrupt transformations over the last several centuries due to changing land use and climate. Researchers look to pre-settlement forests as a guide for forest restoration, though much of our understanding of composition and dynamics in pre-settlement forests is based on spatially restricted sediment records, few and fragmented old-growth stands in a narrow range of site types, and potentially biased historical documentation. Logs from historic structures hold information that may be useful to forest ecology in eastern North America, but before these records can be used, we must first establish where the logs originated, why they were selected over other trees, and what they can and cannot tell us about past forest ecology. Using a case study approach, I collected data from fifteen log structures in the central Appalachian region to compare construction site locations, species used, and mean diameter of logs through time to determine the ecological biases associated with human behavior in log structure construction. Construction site locations changed from valleys to mountains through time and the species used in construction shifted from Quercus alba to a mix of Quercus alba, Liriodendron tulipifera, Pinus strobus, and Castanea dentata over time. The diameter of logs used in construction were generally consistent through time, with an average basal diameter of 31.3 cm (±4.7). Mean age of logs increased through time for Quercus species, regardless of log diameter. These results suggest the species used for structural logs were selected by their abundance at the location of construction but that as construction site locations and resource availability changed through time, the species used in construction changed as well. While there are biases and limitations of dendroecological data from historic structures, the results presented here demonstrate that structural log data provide greater replication during the early European immigration period, representation of upland (valley) forest sites, and establishment of chronologies for species that are not well represented in current tree-ring chronologies (e.g. Castanea dentata, Liriodendron tulipifera). These results suggest structural logs can benefit ecological research by filling the temporal, spatial, and species gaps in tree-ring chronologies not only for the central Appalachian region, but also for other areas in eastern North America.     

The Phytogeography of Caprifoliaceae s. str. with Its Implications for Understanding Eastern Asiatic Flora

The Caprifoliaceae s. str. as here defined consists of 4 tribes and 12 genera: Caprifolieae (Lonicera, Leycesteria), Linnaeeae (Symphoricarpos, Abelia, Zabelia, Linnaea, Dipelta, Kolkwitzia, Heptacodium ), Diervilleae (Diervilla, Weigela ), Triosteae (Triosteum). Based on chorology, fossil records and dominant woody habit, the family may be considered as a fairly old one and probably originated in the Late Cretaceous or the Early Tertiary. In the light of facts, such as a number of phylogenetic series of Abelia, Triosteum and Weigela occurring in east Asia, Heptacodium, endemic to East Asia, as a link between the tribe Caprifolieae and the tribe Linnaeeae, and existence in East Asia of a high percentage of both palaeoendemic genera and some neoendemics, East Asia seems to be the centerof diversity of the family. Six Eastern Asiatic endemic genera might be grouped under three categories, Heptacodium, Dipelta and Kolkwitzia as palaeoendemics, Weigela as active epibiotics, and Zabelia and Leycesteria as neoendemics. The above inferences are made only on the basis of three main attributes, systematic position of genera isolated or not, their geographical distribution continuous or discontinuous with the closest relatives and the degree of diversification of forms or distinction between species within a genus, without consideration of insufficient fossil records and cytological data.     

Frameshifting in Alphaviruses: A Diversity of 3′ Stimulatory Structures

Programmed ribosomal frameshifting allows the synthesis of alternative, N-terminally coincident, C-terminally distinct proteins from the same RNA. Many viruses utilize frameshifting to optimize the coding potential of compact genomes, to circumvent the host cell's canonical rule of one functional protein per mRNA, or to express alternative proteins in a fixed ratio. Programmed frameshifting is also used in the decoding of a small number of cellular genes. Recently, specific ribosomal − 1 frameshifting was discovered at a conserved U_UUU_UUA motif within the sequence encoding the alphavirus 6K protein. In this case, frameshifting results in the synthesis of an additional protein, termed TF (TransFrame). This new case of frameshifting is unusual in that the − 1 frame ORF is very short and completely embedded within the sequence encoding the overlapping polyprotein.The present work shows that there is remarkable diversity in the 3′ sequences that are functionally important for efficient frameshifting at the U_UUU_UUA motif. While many alphavirus species utilize a 3′ RNA structure such as a hairpin or pseudoknot, some species (such as Semliki Forest virus) apparently lack any intra-mRNA stimulatory structure, yet just 20 nt 3′-adjacent to the shift site stimulates up to 10% frameshifting. The analysis, both experimental and bioinformatic, significantly expands the known repertoire of − 1 frameshifting stimulators in mammalian and insect systems.     

The Origin and Genetic Status of Insular Caprines in the Eastern Mediterranean: A Case Study of Free-Ranging Goats (Capra aegagrus cretica) on Crete

The history and species status of free-ranging goats inhabiting the Eastern Mediterranean islands is discussed with reference to morphometric, archaeological and genetic findings. A case study on the free-ranging goats on Crete (Capra aegagrus cretica) is presented. The phenotype of the Cretan goat resembles that of the wild bezoar goat (C. aegagrus). However, the mitochondrial DNA of cytochrome b and d-loop sequences shows affinity with domestic goats. It has been suggested that the Cretan goat represents a feral animal that was introduced onto the island during the 6th millennium b.c. as a primitive domestic, and has retained the wild morphotype but has undergone significant genetic change. An alternative explanation, and the one that is proposed here, is that the goat was introduced onto the island in wild form and released as a food source. Subsequent introgressions with domestic animals, especially ewes, have influenced its genotype. These conclusions are applicable to other free-living goats and sheep which inhabit islands in the Eastern Mediterranean.     

Archaeobotanical data and crop storage evidence from an early Bronze Age 2 burnt house at Arslantepe, Malatya, Turkey

Excavations on the southwest area at Arslantepe, Malatya, Turkey, by far the largest tell on the Malatya plain from the 5th millennium to the Neo-Hittite age, revealed an important change in the settlement patterns during the two main levels of the VI C Period of the site (Early Bronze Age 2, 2750–2500 cal b.c.). The latter level corresponds to a village founded on neatly shaped terraces in a layout which lasted for centuries, well into the following Early Bronze Age 3. This continuity was not broken even by violent fires that at times destroyed some houses, producing a huge quantity of charred plant remains, which comprised fruits, seeds and wood charcoal. The archaeobotanical data so far obtained from the EB2 house A607, the richest one in macro-remains, on which efforts have been concentrated first, provides much data about the use of the surrounding land. Charcoal of Quercus (deciduous oaks) (85%) followed by Populus (poplar) (9%) are dominant among wood remains, while Hordeum (barley) (70%) is the dominant crop found, followed by Cicer (chickpea) (17%). The crop storage methods were investigated by mapping the positions of charred fruits and seeds both according to the grid system and in comparison to the layout of facilities (grinding stone, hearths, oven) and the distribution of pottery (jars, bowls, pots) in order to detect where the crops were kept and the ways in which they were stored, processed, and used. The house facilities and furniture suggest that the house was a multifunctional place, which included storage space, but which was limited to household needs. The new archaeobotanical investigation so far carried out on the burnt house A607 suggests some implications on the degree of agriculture, on crop storage and on food processing practises and also gives information on the natural landscape surrounding the site.