Genetic structure and domestication footprints of the tusk,coat color,and ear morphology in East Chinese pigs

The domestication and artificial selection of wild boars have led to dramatic morphological and behavioral changes, especially in East Chinese (ECN) pigs. Here, we provide insights into the population structure and current genetic diversity of representative ECN pig breeds. We identify a 500-kb region containing six tooth development-relevant genes with almost completely different haplotypes between ECN pigs and Chinese wild boars or European domestic pigs. Notably, the c.195A>G missense mutation in exon 2 of AMBN may cause alterations in its protein structure associated with tusk degradation in ECN pigs. In addition, ESR1 may play an important role in the reproductive performance of ECN pigs. A major haplotype of the large lop ear-related MSRB3 gene and eight alleles in the deafness-related GRM7 gene may affect ear morphology and hearing in ECN pigs. Interestingly, we find that the two-end black (TEB) coat color in Jinhua pigs is most likely caused by EDNRB with genetic mechanisms different from other Chinese TEB pigs. This study identifies key loci that may be artificially selected in Chinese native pigs related to the tusk, coat color, and ear morphology, thus providing new insights into the genetic mechanisms of domesticated pigs.     

Prevalence and species richness of trematode parasites only partially recovers after the 2011 Tohoku,Japan, earthquake tsunami

Trematode parasites have complex life cycles and use a variety of host species across different trophic levels. Thus, they can be used as indicators of disturbance and recovery of coastal ecosystems. Estuaries on the Pacific coast of northeastern Japan were heavily affected by the 2011 Tohoku earthquake tsunami. To evaluate the effect of the tsunami on the trematode community, we examined trematodes in the mud snail, Batillaria attramentaria, at five study sites (three sites severely exposed to the tsunami and two sites sheltered from the tsunami) in Sendai Bay for 2 years prior to and 8 years after the tsunami. While the trematode prevalence decreased at all study sites, the species richness decreased only at the sites exposed to the tsunami. Although parasitism increased over the study period post-tsunami, the community had not fully recovered 8 years after the event. Trematode community structure has changed every year since the tsunami and has not stabilised. This could be explained by the alteration of first and second intermediate host communities. Our study suggests that it will take more time for the recovery of the trematode community and the associated coastal ecosystem in the Tohoku region.     

Contrasting patterns of genetic structure and phylogeography in the marine agarophytes Gelidiophycus divaricatus and G. freshwateri (Gelidiales,Rhodophyta) from East Asia

The evolutionary and population demographic history of marine red algae in East Asia is poorly understood. Here, we reconstructed the phylogeographies of two upper intertidal species endemic to East Asia, Gelidiophycus divaricatus and G. freshwateri. Phylogenetic and phylogeographic inferences of 393 mitochondrial cox1, 128 plastid rbcL, and 342 nuclear ITS2 sequences were complemented with ecological niche models. Gelidiophycus divaricatus, a southern species adapted to warm water, is characterized by a high genetic diversity and a strong geographical population structure, characteristic of stable population sizes and sudden reduction to recent expansion. In contrast, G. freshwateri, a northern species adapted to cold temperate conditions, is genetically relatively homogeneous with a shallow population structure resulting from steady population growth and recent equilibrium. The overlap zone of the two species roughly matches summer and winter isotherms, indicating that surface seawater temperature is a key feature influencing species range. Unidirectional genetic introgression was detected at two sites on Jeju Island where G. divaricatus was rare while G. freshwateri was common, suggesting the occurrence of asymmetric natural hybrids, a rarely reported event for rhodophytes. Our results illustrate that Quaternary climate oscillations have left strong imprints on the current day genetic structure and highlight the importance of seawater temperature and sea level change in driving speciation in upper intertidal seaweed species.     

Impacts of large mammals on movements of the pouched mouse (Saccostomus mearnsi) in central Kenya

Populations of large wild mammals are declining worldwide, while the abundance of livestock is increasing. The absence of large mammals frequently leads to increases in the abundance of small mammals such as rodents, but little is known about how the loss of large mammals affects the behaviour of small mammals. To investigate this question, we analysed long‐term data collected at the Kenya Long‐term Exclosure Experiment, which excludes different combinations of large mammals from a savannah ecosystem in central Kenya. We investigated the effects of excluding large mammals, both wild and domestic, on the movements of the pouched mouse (Saccostomus mearnsi), the most common species of small mammal in this habitat. Mice moved ~20% more in the presence of wildlife, but their movements were not significantly affected by the presence of cattle. An index of intraspecific contacts between mice was higher at higher mouse densities, and these high densities were more likely when wildlife and cattle were absent. The results suggest that the absence of large mammals led to higher densities of small mammals, which resulted in a greater probability of intraspecific contacts, despite lower average movement distances.     

东亚-澳大利西亚候鸟迁飞区中杓鹬 的迁徙追踪

追踪候鸟的迁徙活动是全面认识其生活史年周期的重要途径。中杓鹬(Numeniusphaeopus)在全球广泛分布,但在东亚-澳大利西亚候鸟迁飞区的迁徙活动一直缺乏追踪研究。2018年2月,在澳大利亚西北部的布鲁姆为捕捉到的中杓鹬成鸟佩戴平台发射终端或全球定位系统-全球移动通讯系统追踪器,以确定其迁徙日程、迁徙路线以及迁徙停歇地和繁殖地的地理位置。我们从成功追踪的7只个体获取了6 378条精度高于1 km的位点数据。分析结果表明,在春季,中杓鹬的迁徙时长为(36±4)d,其间在1～3个迁徙停歇地的停留日期为(23±2)d,从越冬地到繁殖地的迁徙距离为(9 795±346)km(n=7)。追踪的中杓鹬在俄罗斯东部和中部区域繁殖,不同个体的繁殖地纬度相近而经度范围较广。在秋季,中杓鹬的迁徙时长为(90±27)d,相比春季迁徙时长更长;其间,在2～4个迁徙停歇地停留(79±29)d,从繁殖地到越冬地的迁徙距离为(10 101±520)km(n=5)。无论在春季还是秋季迁徙,迁徙停歇地广泛分布于东亚、东南亚沿海及内陆区域。大部分个体春季和秋季的迁徙路线相近,成功追踪的个体均在秋季返回了上一年的越冬地,这表明中杓鹬对越冬地具有很高的忠诚度。     

东海浮游等足类和涟虫类的调查

根据1997~2000年东海(23°30′~33°00′N,118°30′~128°00′E)海域4个季节海洋调查资料,对东海浮游等足类和涟虫类种类的组成、数量变化及地理分布等特征作了探讨。结果表明,调查海域出现浮游等足类2种,其中圆柱水虱(Cirolanasp.)在东海等足类数量中具有绝对优势(占总丰度的98%),中国急游水虱(Tachaea chinensis)是稀有种。等足类主要在夏季出现,并分布在东海近海。浮游涟虫类主要分布在台湾海峡和东海南部海域。浮游涟虫类有4种,细长涟虫(Iphinoe tenera)和萨氏异涟虫(Heterocumasarsi)在3个季节出现,丰度和出现率较高,是东海涟虫类的常见种;无尾涟虫(Leueonsp.)在2个季节出现,丰度和出现率与前2个种相似,是次常见种。卵圆涟虫(Bodotria ovalis)仅出现在秋季,数量和出现率极低,是稀有种。细长涟虫、萨氏异涟虫和无尾涟虫都是暖水种。相比之下,无尾涟虫有更广泛的适温能力。卵圆涟虫在盐度较低的长江口出现,是一个近岸种。     

粤西茂名地区毒蛇咬伤的流行病学特征研究

目的 探讨茂名地区毒蛇咬伤的流行病学特征.方法 收集2014～2019年我院收治的毒蛇咬伤患者1625例的临床资料,对毒蛇种类、性别、年龄、咬伤部位、咬伤地点、伤后就诊时间、住院时间进行统计分析.结果 茂名地区主要致伤毒蛇为竹叶青蛇和眼镜蛇;受伤患者以41～70岁男性多见;被咬伤部位主要为腕关节、踝关节以下;咬伤地点多...     

Emergence,evolution, and vaccine production approaches of SARS-CoV-2 virus: Benefits of getting vaccinated and common questions

The emergence of coronavirus disease 2019 (COVID-19) pandemic in Wuhan city, China at the end of 2019 made it urgent to identify the origin of the causal pathogen and its molecular evolution, to appropriately design an effective vaccine. This study analyzes the evolutionary background of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2 or SARS-2) in accordance with its close relative SARS-CoV (SARS-1), which was emerged in 2002. A comparative genomic and proteomic study was conducted on SARS-2, SARS-1, and Middle East respiratory syndrome coronavirus (MERS), which was emerged in 2012. In silico analysis inferred the genetic variability among the tested viruses. The SARS-1 genome harbored 11 genes encoding 12 proteins, while SARS-2 genome contained only 10 genes encoding for 10 proteins. MERS genome contained 11 genes encoding 11 proteins. The analysis also revealed a slight variation in the whole genome size of SARS-2 comparing to its siblings resulting from sequential insertions and deletions (indels) throughout the viral genome particularly ORF1AB, spike, ORF10 and ORF8. The effective indels were observed in the gene encoding the spike protein that is responsible for viral attachment to the angiotensin-converting enzyme 2 (ACE2) cell receptor and initiating infection. These indels are responsible for the newly emerging COVID-19 variants αCoV, βCoV, γCoV and δCoV. Nowadays, few effective COVID-19 vaccines developed based on spike (S) glycoprotein were approved and become available worldwide. Currently available vaccines can relatively prevent the spread of COVID-19 and suppress the disease. The traditional (killed or attenuated virus vaccine and antibody-based vaccine) and innovated vaccine production technologies (RNA- and DNA-based vaccines and viral vectors) are summarized in this review. We finally highlight the most common questions related to COVID-19 disease and the benefits of getting vaccinated.     

广东省蛇类新纪录——菱斑小头蛇

2007年6月23日,在广东省南昆山省级自然保护区采集到一条菱斑小头蛇(Oligodon catenata),为广东省蛇类新纪录。该新分布区的发现说明菱斑小头蛇在我国可能并非间断分布。     

Fifteen Cases of Penicilliosis in Guangdong,China

We analyzed the occurrence, clinical and physical features, laboratory findings, diagnostic criteria, reaction to therapy and prognosis of 15 cases Penecilliosis marneffei. Four were localized infection on skin, eleven were systemic infection, all cases were found in Guangdong province of China. We found that males were predominant in infection compared with females in 15 patients, and all patients observed had different occupations. The patients with AIDS as underlying disease were commonly drivers or unemployed. Thirteen of 15 patients had underlying diseases, i.e., connective tissue disease, aplastic anemia, kidney transplant, AIDS. Clinical features showed different symptoms, including weight loss, high fever, skin lesions, and respiratory system symptoms. Seven of 15 patients received antifungal therapy, the remaining eight patients did not receive therapy for different reasons. Nine of the patients died five recovered. Fifteen isolates were cultured from skin lesions, blood, bone marrow, peritoneum dialysis and pleural effusion and were confirmed to be Penicillium marneffei by morphology, thermal dimorphism, pathology and DNA sequence analysis. This report indicates that Penicillium marneffei may exist in nature in Guangdong province of SE China.