Enhanced early detection and enumeration of zebra mussel (Dreissena spp.) veligers using cross-polarized light microscopy

Zooplankton with calcareous skeletons are birefringent under cross-polarized light, and thus this technique can be quite useful, indeed sometimes almost essential, for the detection and enumemeration of these types of organisms in plankton samples. A simple and inexpensive application of this technique is described and illustrated with quantitative examples from research on the veligers of the zebra mussel Dreissena polymorpha (Pallas). The time required to detect veligers in plankton samples was decreased by an order of magnitude; the accuracy of counts was substantially improved (15% more than controls), and the time required for counts was greatly reduced (41% of control times). This technique is especially useful in situations in which veligers are difficult to find or see (e.g., at low densities, in samples cluttered with extraneous organisms or material) or when the investigator is inexperienced with plankton sampling and planktonic organisms. The major limitations are its inability to discriminate among various bivalve species that have planktonic larvae and the similar appearance of ostracods which also have calcareous shells. Expanded use of this technique should (1) increase our ability to use plankton sampling for the early detection of veligers during range expansion and reproductive cycles and (2) permit more accurate estimates of veliger abundance.     

Cervex brush versus vaginal–cervical–endocervical (VCE) triple smear techniques in cervical sampling

Cervex brush versus vaginal–cervical–endocervical (VCE) triple smear techniques in cervical sampling
Cervex brush sampling was compared with the conventional triple vaginal–cervical–endocervical (VCE) smear technique. Nine hundred and fifty‐nine Cervex brush smears and 1064 VCE smears were studied. All smears with both methods were technically satisfactory for evaluation. Endocervical cells were found in 90.7% and metaplastic cells in 73.3% of Cervex brush samples and in 92.5% and 64.1% of VCE samples, respectively. There were significantly more metaplastic cells in smears from premenopausal women. Low grade squamous intraepithelial lesion (SIL) was found in three Cervex brush samples and in two VCE samples. High‐grade SIL was found only in one Cervex brush sample. Benign cellular changes were found in 142 Cervex brush samples and in 144 VCE samples. Sampling with the Cervex brush is efficient, simple and fast and gives high quality cervical smears for cytological evaluation.     

Long timestep dynamics of peptides by the dynamics driver approach

Previous experience with the Langevin/implicit-Euler scheme for dynamics (“LI”) on model systems (butane, water) has shown that LI is numerically stable for timesteps in the 5–20 fs range but quenches high-frequency modes. To explore applications to polypeptides, we apply LI to model systems (several dipeptides, a tetrapeptide, and a 13-residue oligoalanine) and also develop a new dynamics driver approach (“DA”). The DA scheme, based on LI, addresses the important issue of proper sampling, which is unlikely to be solved by small-time step integration methods or implicit methods with intrinsic damping at room temperature, such as LI. Equilibrium averages, time-dependent molecular properties, and sampling trends at room temperature are reported for both LI and DA dynamics simulations, which are then compared to those generated by a standard explicit discretization of the Langevin equation with a 1 fs timestep. We find that LI's quenching effects are severe on both the fast and slow (due to vibrational coupling) frequency modes of all-atom polypeptides and lead to more restricted dynamics at moderate timesteps (40 fs). The DA approach empirically counteracts these damping effects by adding random atomic perturbations to the coordinates at each step (before the minimization of a dynamics function). By restricting the energetic fluctuations and controlling the kinetic energy, we are able with a 60 fs timestep to generate continuous trajectories that sample more of the relevant conformational space and also reproduce reasonably Boltzmann statistics. Although the timescale for transition may be accelerated by the DA approach, the transitional. information obtained for the alanine dipeptide and the tetrapeptide is consistent with that obtained by several other theoretical approaches that focus specifically on the determination of pathways. While the trajectory for oligoalanine by the explicit scheme over the nanosecond timeframe remains in the vicinity of the full α_R-helix starting structure, and a high-temperature (6000°K) MD trajectory departs slowly from the a helical structure, the DA-generated trajectory for the same CPU time exhibits unfolding and refolding and reveals a range of conformations with an intermediate helix content. Significantly, this range of states is more consistent with spectroscopic experiments on small peptides, as well as the cooperative two-state model for helix–coil transition. The good, near-Boltzmann statistics reported for the smaller systems above, in combination with the interesting oligoalanine results, suggest that DA is a promising tool for efficiently exploring conformational spaces of biomolecules and exploring folding/unfolding processes of polypeptides. © 1995 Wiley-Liss, Inc.     

Determination of the NMR solution structure of a specific DNA complex of the Myb DNA-binding domain

Summary The solution structure of a specific DNA complex of the minimum DNA-binding domain of the mouse c-Myb protein was determined by distance geometry calculations using a set of 1732 nuclear Overhauser enhancement (NOE) distance restraints. In order to determine the complex structure independent of the initial guess, we have developed two different procedures for the docking calculation using simulated annealing in four-dimensional space (4D-SA). One is a multiple-step procedure, where the protein and the DNA were first constructed independently by 4D-SA using only the individual intramolecular NOE distance restraints. Here, the initial structure of the protein was a random coil and that of the DNA was a typical B-form duplex. Then, as the starting structure for the next docking procedure, the converged protein and DNA structures were placed in random molecular orientations, separated by 50 Å. The two molecules were docked by 4D-SA utilizing all the restraints, including the additional 66 intermolecular distance restraints. The second procedure comprised a single step, in which a random-coil protein and a typical B-form DNA duplex were first placed 70 Å from each other. Then, using all the intramolecular and intermolecular NOE distance restraints, the complex structure was constructed by 4D-SA. Both procedures yielded the converged complex structures with similar quality and structural divergence, but the multiple-step procedure has much better convergence power than the single-step procedure. A model study of the two procedures was performed to confirm the structural quality, depending upon the number of intermolecular distance restraints, using the X-ray structure of the engrailed homeodomain-DNA complex.Abbreviations rmsd root-mean-square deviation - NOE nuclear Overhauser enhancement - 4D-SA simulated annealing in four-dimensional space - Myb-R2R3 repeats 2 and 3 of the DNA-binding domain of the c-Myb protein - DNA 16 Myb-specific binding DNA duplex with 16 base pairs - IHDD-C residues 3 to 59 of the C-chain of the engrailed homeodomain-DNA complex - DNA11 DNA duplex with base pairs 9 to 19 of the engrailed homeodomain-DNA complex     

An Australian trial of ThinPrep: a new cytopreparatory technique

To evaluate the sensitivity and suitability of ThinPrep, a new slide preparation technique, 2026 paired cervical cytology slides were examined. After conventional Papanicolaou smears were prepared, the sampling instruments were rinsed in a fluid fixative. ThinPrep slides were then prepared in the laboratory from the surplus cells in the fixative. Compared with the Pap smears, ThinPrep slides were easier and quicker to screen, were inconclusive less often, and had similar rates for detecting abnormalities and infection. There were more unsatisfactory ThinPrep slides and more ThinPrep slides lacked endocervical cells. Both of these shortcomings were found to be linked to the choice of sampling implements. This study, in which a variety of sampling instruments was used, fails to confirm some of the previous claims made for the new technique.     

Evaluation of sticky light traps for sampling mosquito larvae

Very simply constructed aquatic sticky light traps employing a chemical solution emitting a bright light attracted large numbers of all larval instars, but few pupae of Aedes cantans in trials in England. During April numbers of larvae per trap ranged from 73±14.2 to 163±19.9, whereas dipping with a ladle yielded only 6.9±5.5 to 11.8±7.7 larvae/dip. The traps were also effective in sampling larvae of Culiseta morsitans and in Sierra Leone larvae of Aedes aegypti. It was concluded that sticky light traps could be valuable in sampling relative numbers of mosquito larvae and merited further evaluation.

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Résumé Des pièges adhésifs lumineux faciles à réaliser sont construits pour les captures des larves de moustiques. Ils sont formés de paires de boîtes de Pétri en plastique contenant une solution émettrice de lumière provenant de bâtons lumineux chimiques Cyalume^®. Chaque piège est recouvert d'une feuille de plastique de 16×16 cm enduite d'une substance qui reste adhésive sous l'eau. Les larves de moustiques attirées vers la source lumineuse viennent se coller à la feuille adhésive.Ces pièges ont été utilisés avec succès en Angleterre pour l'échantillonnage de tous les stades larvaires d'Aedes cantans, mais pas avec le même efficacité pour les nymphes. Des tests plus restreints ont montré que la technique était également utilisable pour les larves de Culiseta morsitans. Les nombres moyens d'A. cantans capturés pendant une piode de 12 h (73±14,2–163±19,9) étaient supérieux à ceux obtenus en plongeant une louche (6,9±5,5–11,8±7,7). En utilisant les pièges adhésifs lumineux, les captures moyennes de C. morsitans étaient également supérieures (12,6±4,7–35,8±8,9) contre (5,7±6,1–8,9±7,8) avec la méthode de la louche.En Sierra Leone, des stades larvaires immatures d'A. aegypti se développant dans des containers de stockage d'eau ont également pu être capturés à l'aide de ces pièges.Bien qu'une évaluation plus poussée soit encore nécessaire, il ne fait aucun doute que ces pièges adhésifs lumineux aient un intérêt considérable pour l'échantillonnage larvaire dans les sites inaccessibles, tels que les trous d'arbres ou les trous de crabes, où les méthodes d'échantillonage classiques sont souvent d'un emploi difficile.

     

Inositol (1,4,5)trisphosphate-promoted Ca2+ release from microsomal fractions of rat liver

Crude mitochondrial fractions containing a substantial amount of microsomes accumulate Ca2+ in the presence of ATP, ruthenium red and oligomycin. A proportion of this accumulated Ca2+ is released by the addition of low concentrations (ca. 1 microM) of inositol (1,4,5) trisphosphate . Under some conditions the release is transient, and evidence is presented which suggests that this is due to inhomogeneity in the vesicle population. (1,4,5)inositol trisphosphate -induced Ca2+ release can also be demonstrated, under appropriate experimental conditions, in a more purified microsomal fraction essentially free of mitochondria.     

Distribution of repeated DNA families in the human genome

By means of restriction enzymes analysis and molecular hybridization, the distribution of repeated DNA families has been studied in the different DNA components into which the human genome can be fractionated by density gradient techniques. Three classes of DNA molecules have been analyzed: i) an homogeneous DNA component (satellite-like sequences; Q = 1.696 g/cm3, 3% of total DNA, AT repeated), ii) AT rich (Q = 1.698 g/cm3, 30% of total DNA, AT main-band) and GC rich (Q = 1.708 g/cm3, 6% of total DNA, GC main-band) DNA components. By this approach we have observed that Sau3A digestion of GC main-band gives rise to two bands of 75bp and 150bp, absent or under-represented in both AT rich DNA components. A preliminary characterization of these DNA fragments suggests that they contain one or more families of repeated sequences which fail to hybridize to EcoRI, HindIII and AluI families of repeats. In addition, we have observed that EcoRI sequences (alpha-RI DNA) are under-represented in GC main-band and show the same clustered organization in both AT rich DNA components.     

Les ammonites boréales des formationsnéocomiennes du Sud-Est français (province subméditerranéenne)

The boreal Ammonites (and the more or lessphylogenetically related ones) of the southeast France (Tethyan Realm) are described and figured. 24 forms are refered to, or compared with, previously identified species. 3 are left under open nomenclature, and 7 are new ones. Two new subgenus: Julianites (Paquiericeras) and Lemurostephanus (Olcostephanus) are also introduced.Their biostratigraphic position in the Frenchzonal scheme is detailed. Their contribution to the establishment of correlation between the Boreal and Tethyan provinces is stressed.The most interesting feature is the identification of a Prodichotomites horizon just below the Verrucosum zone, allowing comparison of the definition of the Lower-Upper Valanginian boundary in these two paleobiogeographic realms.