Gene therapy for achromatopsia

The present review summarizes the current status of achromatopsia (ACHM) gene therapy‐related research activities and provides an outlook for their clinical application. ACHM is an inherited eye disease characterized by a congenital absence of cone photoreceptor function. As a consequence, ACHM is associated with strongly impaired daylight vision, photophobia, nystagmus and a lack of color discrimination. Currently, six genes have been linked to ACHM. Up to 80% of the patients carry mutations in the genes CNGA3 and CNGB3 encoding the two subunits of the cone cyclic nucleotide‐gated channel. Various animal models of the disease have been established and their characterization has helped to increase our understanding of the pathophysiology associated with ACHM. With the advent of adeno‐associated virus vectors as valuable gene delivery tools for retinal photoreceptors, a number of promising gene supplementation therapy programs have been initiated. In recent years, huge progress has been made towards bringing a curative treatment for ACHM into clinics. The first clinical trials are ongoing or will be launched soon and are expected to contribute important data on the safety and efficacy of ACHM gene supplementation therapy.     

Resource use by the dryad butterfly is scale-dependent

The factors shaping the ways in which animals use resources are a key element of conservation biology, but ecological studies on resource use typically neglect to consider how the study’s spatial scale may have affected the outcomes. We used the dryad butterfly, inhabiting xerothermic grassland and wet meadow, to test for differences in its resource use at two scales–habitat patch and landscape. Based on records of plant species composition from random points within four habitat patches and from points in 53 patches along surveyed transects, we compared the microhabitat preferences of the butterfly on the patch scale, and species occurrence and abundance patterns on the landscape scale. We distinguished four main groups of factors related to vegetation structure which affected the butterfly’s resource use—factors having similar effects on both spatial scales, factors operating primarily on one of the scales considered, factors relevant only on a single spatial scale, and factors operating on both scales but with effects differing between the two habitat types. We suggest that invertebrates may respond on two spatial levels or on only one, and conclude that larger-scale studies can meet the challenges of a sophisticated metapopulation approach and can give insight into the habitat characteristics affecting the persistence of species in landscapes. We stress the value of large-scale studies on species’ habitat preferences when planning conservation strategies, while pointing out that small-scale studies provide useful information about species ecology and behavior, especially if conducted in multiple habitats.     

Sixty years of environmental change in the world's largest freshwater lake – Lake Baikal, Siberia

High-resolution data collected over the past 60 years by a single family of Siberian scientists on Lake Baikal reveal significant warming of surface waters and long-term changes in the basal food web of the world's largest, most ancient lake. Attaining depths over 1.6 km, Lake Baikal is the deepest and most voluminous of the world's great lakes. Increases in average water temperature (1.21 °C since 1946), chlorophyll a (300% since 1979), and an influential group of zooplankton grazers (335% increase in cladocerans since 1946) may have important implications for nutrient cycling and food web dynamics. Results from multivariate autoregressive (MAR) modeling suggest that cladocerans increased strongly in response to temperature but not to algal biomass, and cladocerans depressed some algal resources without observable fertilization effects. Changes in Lake Baikal are particularly significant as an integrated signal of long-term regional warming, because this lake is expected to be among those most resistant to climate change due to its tremendous volume. These findings highlight the importance of accessible, long-term monitoring data for understanding ecosystem response to large-scale stressors such as climate change.     

Effects of Crop Diversity on Agroecosystem Function: Crop Yield Response

Understanding the role of diversity in the functioning of ecosystems has important implications for agriculture. Previous agricultural research has shown that crop rotation and the use of cover crops can lead to increases in yield relative to monoculture; however, few studies have been performed within the broader context of diversity–ecosystem function theory and in the absence of chemical inputs. We performed a field experiment in SW Michigan, USA, in which we manipulated the number of crop species grown in rotation and as winter cover crops over a 3-year period to test if varying the number of species in a rotation affected grain yield, a critical metric of ecosystem function in row-crops. The experimental design was unique in that no fertilizer or pesticides were used, and the only management variable manipulated was number of species in the rotation, thus providing a strong comparison to grassland diversity–ecosystem function experiments. Treatments included continuous monocultures of three row-crops, corn Zea mays L., soybean Glycine max (L.) Merr., and winter wheat Triticum aestivum L., and 2- and 3-year annual rotations with and without cover crops (zero, one, or two legume/small grain species), encompassing a range of crop diversity from one to six species. Crop yields and weed biomass were measured annually for 3 years and plant available soil nitrogen was measured over the course of the growing season in the final year of the study. In all 3 years, corn grain yield increased linearly in response to the number of crops in the rotation. Corn yields in the highest diversity treatment (three crops, plus three cover crops) were over 100% higher than in continuous monoculture and were not significantly different from the county average for each of the 3 years despite the absence of chemical inputs. Corn yields in the diversity treatments were strongly correlated with the availability of inorganic soil nitrogen, which was likely influenced by the number of different legume species (crops and cover crops) present in the rotation. In soybean and winter wheat, yield differences among crop diversity treatments were also significant, but of lower magnitude (32 and 53%, respectively), and showed little direct relationship to the number of crop species grown in a rotation. Results demonstrate that agricultural research motivated by ecological theory can provide important insights into the functioning of agroecosystems and enhance our understating of the linkages between diversity and ecosystem function. Importantly, these results suggest that reduced chemical inputs do not necessarily result in yield penalties and provide support for incorporation of crop or species diversity when determining how ecosystem services can be included in food, fiber, and biofuel production.     

Genomics as knowledge enterprise: Implementing an electronic research habitat at the Biopolis Experimental Therapeutics Center

The Experimental Therapeutics Center (ETC) has been established at Biopolis to advance translational research by bridging the gap between discovery science and commercialization. We describe the Electronic Research Habitat at ETC, a comprehensive hardware and software infrastructure designed to effectively manage terabyte data flows and storage, increase back office efficiency, enhance the scientific work experience, and satisfy rigorous regulatory and legal requirements. Our habitat design is secure, scalable and robust, and it strives to embody the core values of the knowledge-based workplace, thus contributing to the strategic goal of building a "knowledge economy" in the context of Singapore's on-going biotechnology initiative.     

丛枝菌根真菌培养方法研究进展

文章结合最新研究成果着重从十个不同的层面对丛枝菌根真菌(AM真菌)的培养方法研究做了较为系统的介绍与评述。认为活体宿主植物盆栽培养法是最简单、最容易、也是最可靠的AM真菌培养方法,玻璃珠分室培养可方便地将培养基质与AM真菌分开,能获得纯净的AM真菌菌体,具有其它方法不可替代的作用,AM真菌单孢无菌的分室Ri T-DNA转型胡萝卜根双重离体培养是获得AM真菌纯净菌体和研究AM真菌遗传、生理、生化等特性的理想方法,以此方法为基础,在根室中补充碳源、在菌丝生长室置换培养基、多次收获菌体的转型根改良双重培养法是提高某些AM真菌孢子产量的力荐方法。     

Construction and characterization of a bacterial artificial chromosome library of marine macroalga<Emphasis Type="Italic">Porphyra yezoensis</Emphasis> (Rhodophyta)

A large-DNA-fragment library is necessary for research into thePorphyra genome. In this study, a bacterial artificial chromosome (BAC) library ofPorphyra yezoensis was constructed and characterized. The library contains 54,144 BAC clones with an average insert size of about 65 kb and fewer than 0.7% of clones without large inserts. Therefore, its capacity is more than 6.6P. yezoensis genome equivalents, and the probability of recovering any nuclear DNA sequence from the library is higher than 99%. The library shows good fidelity and stability. A putative trehalose-6-phosphate synthase (TPS) gene was successfully screened out from the library. The above results show that the library is useful for gene cloning and genomic research inP. yezoensis. These authors contributed equally to this work.     

Protein and lysate array technologies in cancer research

Capturing quantitative proteomic information provides new insights for enhancing the understanding of cancer biology. There have been several protein microarray formats, and each has an advantage depending on what is being detected. However, in contrast to nucleotide printing, the production of protein arrays generally requires the capability of handling viscous solutions, and the mishandling of various factors, such as temperature and humidity, adversely affect protein status. The requirement for such specifications is critical when increasing the throughput for monitoring a large number of samples for rigorous quantitation. In particular, a new solid pin arrayer has been extremely powerful when highly viscous cell lysates printed for high-density, "reverse-phase" protein arrays, and acquired data allows for theoretical models of protein signaling networks to be constructed. In this review, applications of currently available protein microarray technology to cancer research are discussed including the advantages of the new solid pin architecture for opening up powerful proteomic applications.     

The ruthenium(II)–arene compound RAPTA-C induces apoptosis in EAC cells through mitochondrial and p53–JNK pathways

An investigation of the molecular mechanism of the anticancer activity demonstrated by the ruthenium(II)–arene compound [Ru(η⁶-p-cymene)Cl₂(pta)] (pta is 1,3,5-triaza-7-phosphaadamantane), termed “RAPTA-C”, in Ehrlich ascites carcinoma (EAC) bearing mice is described. RAPTA-C exhibits effective cell growth inhibition by triggering G₂/M phase arrest and apoptosis in cancer cells. Cell cycle arrest is associated with increased levels of p21 and reduced amounts of cyclin E. RAPTA-C treatment also enhances the levels of p53, and its treatment triggers the mitochondrial apoptotic pathway, as shown by the change in Bax to Bcl-2 ratios, resulting in cytochrome c release and caspase-9 activation. c-Jun NH₂-terminal kinase (JNK) is a critical mediator in RAPTA-C-induced cell growth inhibition. Activation of JNK by RAPTA-C increases significantly during apoptosis. Overall, these results suggest a critical role for JNK and p53 in RAPTA-C-induced G₂/M arrest and apoptosis of EAC-bearing mice. Consequently, RAPTA-C treatment results in a significant inhibition in the progression of cancer in an animal model, which emulates the human disease, and does so with remarkably low general toxicity; hence, RAPTA-C has potential for clinical application.     

Habitat monitoring in Europe: a description of current practices

Monitoring of biodiversity at the level of habitats is becoming increasingly common. Here we describe current practices in habitat monitoring based on 150 schemes in Europe. Most schemes were initiated after 1990 in response to EU nature directives or habitat management/restoration actions, with funding mostly from European or national sources. Schemes usually monitor both the spatial distribution and the quality of the habitats, and they frequently collect data on environmental parameters and potential causes of changes. Many schemes are local or regional rather than national or international in scope, and sampling effort varies greatly across spatial and temporal scales. Experimental design is used in half of the schemes, however, data are rarely analysed by advanced statistics. Most schemes require two months or less per year in manpower and are typically run by professionals rather than by volunteers. Estimated salaries plus equipment costs average 650,000 Euro per year per scheme, and add up to 80 million Euros annually. Costs are particularly high for schemes based on European or international law and for schemes funded by European or national sources. Costs are also high in schemes in which sampling sites are selected subjectively rather than based on sampling theory, and in schemes that do not use field mapping or remote sensing to document spatial variation in habitats. Our survey demonstrates promising developments in European habitat monitoring but also underlines the need for better spatial coverage, documentation of spatial variaton, improved sampling design and advanced data analysis. Such improvements are essential if we are to judge progress towards the 2010 biodiversity targets.