Direct biosynthesis of adipic acid from lignin-derived aromatics using engineered Pseudomonas putida KT2440

Lignin is one largely untapped natural resource that can be exploited as a raw material for the bioproduction of value-added chemicals. Meanwhile, the current petroleum-based process for the production of adipic acid faces sustainability challenges. Here we report the successful engineering of Pseudomonas putida KT2440 strain for the direct biosynthesis of adipic acid from lignin-derived aromatics. The devised bio-adipic acid route features an artificial biosynthetic pathway that is connected to the endogenous aromatics degradation pathway of the host at the branching point, 3-ketoadipoyl-CoA, by taking advantage of the unique carbon skeleton of this key intermediate. Studies of the metabolism of 3-ketoadipoyl-CoA led to the discovery of crosstalk between two aromatics degradation pathways in KT2440. This knowledge facilitated the formulation and implementation of metabolic engineering strategies to optimize the carbon flux into the biosynthesis of adipic acid. By optimizing pathway expression and cultivation conditions, an engineered strain AA-1 produced adipic acid at 0.76 g/L and 18.4% molar yield under shake-flask conditions and 2.5 g/L and 17.4% molar yield under fermenter-controlled conditions from common aromatics that can be derived from lignin. This represents the first example of the direct adipic acid production from model compounds of lignin depolymerization.     

Increased hatching success as a direct benefit of polyandry in birds

Multiple mating by females is difficult to explain in primarily socially monogamous taxa such as birds because mating outside the pair bond often provides no obvious benefit to females. Although indirect selection is often invoked to explain the evolution of polyandry, current evidence suggests that selection on indirect benefits of mating is weak. Here, I consider a direct benefit of remating in birds: increased fertilization success. I test whether increased hatching success of a female's eggs is related to rates of extra-pair paternity (EPP), a proxy of polyandry, across 113 bird species. I use two statistical approaches, control for phylogenetic uncertainty, and assess the fit of competing evolutionary models. Results show there is indeed a positive relationship between rates of EPP and hatching success in birds. I propose that by mating with many males, females may increase their fertility. I end by discussing the biological rationale for this explanation, alternative interpretations of the results, and how this study furthers our understanding of polyandry and mating system evolution.     

Autoantibodies against red blood cell antigens are common in a malaria endemic area

Plasmodium falciparum malaria can cause severe anemia. Even after treatment, hematocrit can decrease. The role of autoantibodies against erythrocytes is not clearly elucidated and how common they are, or what they are directed against, is still largely unknown.We have investigated antibodies against erythrocytes in healthy adult men living in a highly malaria endemic area in Uganda. We found antibodies in more than half of the individuals, which is significantly more than in a non-endemic area (Sweden). Some of the Ugandan samples had a broad reactivity where it was not possible to determine the exact target of the autoantibodies, but we also found specific antibodies directed against erythrocyte surface antigens known to be of importance for merozoite invasion such as glycophorin A (anti-En^a, anti-M) and glycophorin B (anti-U, anti-S). In addition, several autoantibodies had partial specificities against glycophorin C and the blood group systems Rh, Diego (located on Band 3), Duffy (located on ACKR1), and Cromer (located on CD55), all of which have been described to be important for malaria and therefore of interest for understanding how autoantibodies could potentially stop parasites from entering the erythrocyte.In conclusion, specific autoantibodies against erythrocytes are common in a malaria endemic area.     

Emergence of Eucalyptus marginata (jarrah) from seed in Mediterranean-climate forest in response to overstorey,site, seedbed and seed harvesting

Abstract The effects of overstorey, type of site, seedbed, seeding date and seed harvesting by vertebrates and invertebrates on the emergence of Eucalyptus marginata (jarrah) seedlings were studied experimentally in the northern jarrah forest of Western Australia. Seed harvesting by small vertebrates substantially reduced emergence, whereas invertebrates only slightly reduced emergence. Ninety per cent of seed was removed within 1 day when it was on the soil surface and in the open, whereas seed removal was insignificant when the seed was covered by soil. Vertebrates harvested seed more effectively when the understorey and litter were removed and the seed was more visible on the soil surface. Seed harvesting by small vertebrates had less impact on a site where there had been bauxite mining, possibly because the surrounding area was being revegetated with large numbers of seed and the area afforded poor cover for vertebrates. Emergence was less where the overstorey was removed compared to where it was retained, and on the rehabilitated bauxite mined site compared to the forest sites. There was no difference in emergence between the low and high quality forest sites and so the emergence phase could not fully explain the variation in abundance off. marginata seedlings on different quality sites. Post emergence events are likely to be important in explaining this difference between low and high quality sites.     

Variances and Asymptotic Distributions of Direct Standardized Rates

Formulas for the variance of direct standardized rates are given for three different sampling models. The three models are product multinomial models when population totals are fixed by design, or strata totals are fixed by design, or cell (each population—each stratum) totals are fixed by design. Asymptotic distributions are derived for each model. A discussion on the relevance and use of standardized rates and the need for distribution theory is also provided.     

Nitrogen supplying ability of some Philippine rice soils

Summary The nitrogen-supplying power of eight Philippine rice soils was measured by consecutively growing six crops of IR 32 rice under flooded conditions in a greenhouse pot experiment. The dry matter yields or nitrogen uptake of rice were found to be highly positively correlated with the organic carbon and the total nitrogen contents of the soils, as well as with the amounts of ammonium released during an anaerobic incubation test at 30°C for 2 weeks.The results of the study bring out the usefulness of simple tests like organic carbon content and total nitrogen content of soils for predicting the nitrogen-supplying power to lowland rice.     

A novel raw starch digesting thermostable α-amylase from Bacillus sp. I-3 and its use in the direct hydrolysis of raw potato starch

A new strain of Bacillus sp. I-3, isolated from natural soil samples, showed a high raw starch digesting activity towards potato starch. Upon optimization of various environmental and cultural conditions, the yield of α-amylase reached 642 U/mL. The kinetic characterization of partially purified enzyme exhibited the maximum activity at 70 °C, pH 7.0 and revealed a high thermostability in the presence of 10 mM CaCl₂·2H₂O where it could retain more than 90% residual activity at 70 °C after 3.5 h. At 80, 90 and 100 °C, the enzyme retained 80, 59 and 26% of its maximum activity after 2.5, 0.5 and 0.5 h, respectively. The enzyme preparation had a strong affinity towards raw potato starch granules and was almost completely adsorbed onto it. It also hydrolyzed raw potato starch at a concentration of 12.5% significantly in a short period of time of 12 h.