Modelling heterogeneity in detection probabilities in land and aerial abundance surveys in humpback whales (<Emphasis Type="Italic">Megaptera novaeangliae</Emphasis>)

The effective management and conservation of animal populations relies on statistically-sound and replicable surveys to obtain estimates of abundance and assess trends. Surveys of cetaceans, such as humpback whales Megaptera novaeangliae, are difficult to conduct and are particularly affected by bias in detection probability. For example, the probability of detection of whales from land decreases substantially with increased distance from the platform. This distance effect is also true for aerial surveys, combined with the problem that animals are unavailable for detection (underwater) whilst in the field of view. We present a novel approach that combines corrected double-platform land surveys with corrected aerial surveys to obtain a robust estimate of g(0), the probability of detection on the survey line, for aerial surveys of migrating humpback whales. Several sources of heterogeneity in detection probabilities were identified within the land and aerial surveys (including group composition, bearing of first sighting, number of groups being tracked simultaneously and cloud cover). After including these into our estimate of ĝ(0), we found that only 29% of available whales are being detected on the survey line (ĝ(0) = 0.288), which is a considerably smaller estimate than many available for humpback whales using other methods. Incorporating heterogeneity into the population surveys shows that we are likely to be underestimating the population size of whales on the east coast of Australia. The implications of this result for their conservation and management in light of increased whale-human conflict is discussed.     

Capture of melon flies, Zeugodacus cucurbitae (Diptera: Tephritidae), in a food-baited Multilure trap: Influence of distance,diet, and sex

Many countries operate trapping programs to detect invasions of pestiferous fruit fly species (Diptera: Tephritidae). Surveillance relies heavily on traps baited with male lures, which, while highly attractive, have limited effectiveness, because (i) they are sex-specific and (ii) males of some species do not respond to the lures currently in use. For these reasons, detection programs also include food-baited traps that are neither sex- nor species-specific. Compared to male lure-baited traps, however, few studies have measured the attractiveness of food-based traps. The present study describes a mark-release-recapture study conducted in a fruit orchard in Hawaii that measured the attractiveness of a liquid protein hydrolysate-based (torula yeast/borax slurry) trap to adults of the melon fly Zeugodacus cucurbitae (Coquillett). Multiple release points were used at varying distances from a single, central trap to generate estimates of distance-dependent capture probabilities. The potential influences of sex and pre-release diet on capture probability were also examined. Flies were released at 14 d of age and were maintained on one of four dietary regimes that offered a protein hydrolysate-rich diet for varying intervals (i.e., 0, 3, 7, or 14?d, respectively). Recapture rates were similar between the sexes and over both sexes and all diets averaged 3.6%, 3.2%, and 0.6% for release distances of 10, 25, and 50?m, respectively. Pre-release diet had a significant effect on recapture probability for releases at 10 and 25?m: flies fed sugar only or protein hydrolysate-rich diet for only 3?d were captured more frequently than flies that had longer access to yeast extract prior to release.     

葡萄卷叶病毒的纯化,血清学研究及其在脱毒组培苗检测中的应用

将具有典型葡萄卷叶病(Grapevine leafroll diseas,GLRD)症状的葡萄组织,经差速和硫酸铯—蔗糖密度梯度离心,提纯了GLRV,并制备了兔抗血清。电镜下可观察到长度从600～2000nm的线形病毒颗粒,其中以1400nm左右为主。免疫电镜结果表明线形病毒颗粒能被美国的NY-1分离株抗血清(Ⅲ型)所修饰。在间接ELISA中提纯制品与GLRV的Ⅲ、Ⅳ、Ⅱ型抗血清均能产生免疫反应。与Ⅲ型抗血清产生较强的免疫反应,Ⅳ型次之,Ⅱ型最弱。在SDS-免疫双扩散实验中病组织韧皮部粗提液与GLRV的Ⅲ,Ⅳ、Ⅱ型抗血清均产生免疫沉淀线。从而推测我国葡萄园内的葡萄卷叶病很可能由2种或3种卷叶病毒感染所致.采用A蛋白夹心酶联免疫吸附试验(PAS-ELISA)检测葡萄试管苗,Ⅲ型抗血清和自制抗血清的平行测试结果基本相符,共获得11个生食葡萄和10个山葡萄品种的脱葡萄卷叶病毒和扇叶病毒的组培苗,扩繁后田间试种表现出良好的农艺性状。     

沙门氏菌荧光实时定量PCR检测试剂的研制及应用

荧光实时定量PCR技术是近年来广泛应用于沙门氏菌快速检测的现代方法之一,本研究建立了检测沙门氏菌快速、敏感、特异以及准确定量的FQ-PCR方法。采用沙门氏菌fimY基因序列,设计特异引物和探针,通过对Taq酶、Mg2 和引物探针浓度等反应体系和条件的优化,然后进行特异性和适用性实验。最优化结果为:Taq酶用量2.5U;Mg2 浓度为3.75×10-3mol/L;引物浓度为0.65×10-6mol/L,探针浓度为0.30×10-6mol/L;循环条件为step1:95℃2min,step2:95℃5s,60℃40s,40cycles。结果表明该FQ-PCR检测试剂具有快速、简单、灵敏度高、特异性强和适用范围广等优点,可应用于食品卫生监管、商品检验检疫以及临床诊断等领域。     

用序列比对设计的茎环结构探针检测金黄色葡萄球菌

基于金黄色葡萄球菌16S rRNA基因序列,采用序列比对设计了一种茎环结构的寡聚核苷酸探针。探针的环序列即为金黄色葡萄球菌16S rRNA基因序列的其中一个片段,同其他菌种的16S rRNA基因序列误配2个以上的核苷酸,因此能高度专一、灵敏的检测金黄色葡萄球菌16S rRNA。根据分子信标技术和酶联免疫分析的原理,评估一个实验方法,即利用能构象转换的、固定化的茎环结构探针酶联检测靶核酸。由于探针的特异性加强,这个检测系统能有效的排除假阳性即不会出现误配一个核苷酸的情况。采用微量浓度测定分析,最低下限可检测出大约4ng的金葡球菌16SrRNA。这种方法的灵敏度比其他常规检测方法高出了至少一个数量级。     

Conformation and Trimer Association of the Transmembrane Domain of the Parainfluenza Virus Fusion Protein in Lipid Bilayers from Solid-State NMR: Insights into the Sequence Determinants of Trimer Structure and Fusion Activity

Enveloped viruses enter cells by using their fusion proteins to merge the virus lipid envelope and the cell membrane. While crystal structures of the water-soluble ectodomains of many viral fusion proteins have been determined, the structure and assembly of the C-terminal transmembrane domain (TMD) remains poorly understood. Here we use solid-state NMR to determine the backbone conformation and oligomeric structure of the TMD of the parainfluenza virus 5 fusion protein. ¹³C chemical shifts indicate that the central leucine-rich segment of the TMD is α-helical in POPC/cholesterol membranes and POPE membranes, while the Ile- and Val-rich termini shift to the β-strand conformation in the POPE membrane. Importantly, lipid mixing assays indicate that the TMD is more fusogenic in the POPE membrane than in the POPC/cholesterol membrane, indicating that the β-strand conformation is important for fusion by inducing membrane curvature. Incorporation of para-fluorinated Phe at three positions of the α-helical core allowed us to measure interhelical distances using ¹⁹F spin diffusion NMR. The data indicate that, at peptide:lipid molar ratios of ~ 1:15, the TMD forms a trimeric helical bundle with inter-helical distances of 8.2–8.4 Å for L493F and L504F and 10.5 Å for L500F. These data provide high-resolution evidence of trimer formation of a viral fusion protein TMD in phospholipid bilayers, and indicate that the parainfluenza virus 5 fusion protein TMD harbors two functions: the central α-helical core is the trimerization unit of the protein, while the two termini are responsible for inducing membrane curvature by transitioning to a β-sheet conformation.     

Application of conductance techniques to the detection of thermophilic Campylobacter spp. in river water

A study of basal media identified Campylobacter enrichment broth, with (CEB+) and without (CEB) antibiotic supplement, as a suitable medium for the detection and enumeration of Campylobacter jejuni, C. coli and C. lari within aqueous samples via conductance methodology. Despite apparent differences in conductivity profiles between species in the presence of antibiotics, no significant differences (P<0.05) were detected between detection times for each species tested. CEB+ was successfully employed within a combined enrichment and conductance protocol to the detection of C. jejuni from river water at a concentration of 1 CFU ml⁻¹ from 83% of samples in under 39 h and thus demonstrated an improvement over an applied conventional membrane filtration technique.     

Statistical Properties and Control Algorithms of Recursive Quantile Estimators

The present study is an extension of the investigations made by Grieszbach and Schack (1993) where the recursive estimators of the quantile were introduced. Attention is focused on statistical properties and on the controlling of these estimators in order to reduce their variance and to improve their capability of adaptation. Using methods of stochastic approximation, several control algorithms have been developed, where both the consistent and the adaptive estimation are considered. Due to the recursive computation formula the estimators are suitable for the analysis of large data sets and for sets whose elements are obtained sequentially. In this study, application examples from the analysis of EEG‐records are presented, where quantiles are used as threshold values.     

CT与MRI对肝硬化背景下小肝癌检出率的比较

目的:分析比较CT与MR对肝硬化背景下小肝癌检出情况,探究CT与MR在肝硬化背景下小肝癌的诊断价值。方法:选择2010年6月~2015年6月期间,我院收治确诊为肝硬化背景下小肝癌患者91例为研究对象,病理及临床相关方法确诊102个病灶,其中小肝癌69个和微小肝癌33个,患者均在不同时期或序列下行多排螺旋CT与MRI检查,分析比较两者对小肝癌和微小肝癌的检出率。结果:多排螺旋CT检查发现肝癌小病灶91个,其中66个小肝癌,25个微小肝癌;MRI检查发现95个病灶,小肝癌67个,微小肝癌28个;69个小肝癌病灶,检出率最高的为CT动脉期(92.75%)与LAVA动脉期(92.75%),检出率最低的为CT平扫(76.81%);33个微小肝癌病灶,检出率最高为LAVA动脉期(75.76%),检出率最低的为LAVA平衡期(36.36%);CT平扫、门静脉期、动脉期、平衡期、MRI-IN-PHASE、LAVA平衡期、LAVA平扫对小肝癌的检出率显著高于对微小肝癌的检出率(P0.05);CT对小肝癌的检出率显著高于微小肝癌的检出率(P0.05),MRI对小肝癌与微小肝癌的检出率无显著差异(P0.05);MRI与CT对小肝癌的检出率不存在差异(P0.05),但MRI对微小肝癌的检出率显著高于CT(P0.05)。结论:MRI-LAVA的动脉期序列对小肝癌病灶与微小肝癌病灶的检出率最高;CT与MRI在对小肝癌的检出率不存在差异,但MRI对微小肝癌的检出具有更明显的优势。     

Seasonal variation in detectability of butterflies surveyed with Pollard walks

Monitoring protocols should be designed to maximize the probability of detecting target species with limited resources. Most species are imperfectly detected, hence, they will often be overlooked at sites where they actually occur, resulting in false-negative errors (i.e. false absences). Uncertain detection of target species has profound implications for conservation, but can be dealt with by using adequate survey designs and statistical models. Butterflies often are monitored with repeated, fixed-route transect counts (Pollard walks). Even though this survey method is widely used in temperate regions, its efficiency in terms of detection probability has never been rigorously assessed in part owing to a lack of suitable analysis methods. Here, I use site-occupancy models to explore the seasonal patterns in detection probability of four California butterflies using Pollard walks. In an effort to inventory the butterfly fauna in two natural areas in the eastern foothills of the Santa Cruz mountains (California), I surveyed twelve 250 m long transects weekly for 22 weeks. I estimated the detection probability (the probability of recording a species during a single transect walk, given it is present) of four species. The probability of detecting each species depended mostly on the monitoring week. Average detection probability across the season was 64% for Cercyonis pegala, 56% for Limenitis lorquini, 76% for Euphydryas chalcedona, and 50% for Lycaena arota. Based on the mean detection probability, I then inferred the number of visits necessary to be statistically confident that a given species was indeed absent from a transect where it was not observed (i.e. obtaining a false absence rate <5%). Knowledge of detection probabilities is fundamental to the optimal design of monitoring programs and the interpretation of their results. The methods applied in this study provide an efficient and evidence-based method to optimally allocate butterfly monitoring resources across space (number of transects) and time (number and timing of visits).