Genetic characterization of ompH mutants in the deep-sea bacterium Photobacterium sp. strain SS9

OmpH is an outer membrane protein produced by the deep-sea bacterium Photobacterium species strain SS9 in response to elevated hydrostatic pressure. In order to facilitate studies of the function of this protein, a series of OmpH⁺ and OmpH^- strains were obtained from SS9 by Tn5 gene replacement mutagenesis. A previously isolated ompH::lacZ strain and a derivative of this strain harboring a plasmid expressing the wild-type ompH gene were also utilized. The acridine mutagen ICR 191 preferentially inhibited the growth of OmpH⁺ over OmpH^- cells. Indeed, OmpH⁺ cultures treated with the mutagen rapidly accumulated mutants producing reduced levels of OmpH. In addition. OmpH⁺ cells took up the peptide Met-Leu-Phe approximately 15 times more rapidly than OmpH^- cells. The results are consistent with the hypothesis that OmpH functions as a relatively large, nonspecific diffusion channel.Abbreviations OMP Outer membrane protein     

Cenozoic deep-sea ostracods from Maud Rise, Weddell Sea, Antarctica (ODP Site 689): a palaeoceanographical perspective

Cenozoic palaeoceanography of the Maude Rise, Weddell Sea, Antarctica, has been investigated using Palaeocene to Quaternary deep-sea ostracod faunas from 23 samples of ODP Site 689. The abundance of ostracods is high enough only during the Palaeogene (Palaeocene-Oligocene) to allow palaeoceanographical inferences based on changes in diversity, dominance, endemism and faunal turnover (first and last occurrences). The abundance is particularly high throughout the Palaeocene and Eocene, but declines irreversibly near the Eocene/Oligocene boundary. The diversity increases more or less continuously from the Early Palaeocene to the Middle Eocene, and then it generally decreases throughout the remaining part of the Palaeogene (Middle Eocene-Oligocene); an exception is a positive peak in the Shannon-Weaver index in a single sample in the Late Oligocene. No positive peaks in diversity and taxa originations (first occurrences) at c. 40-38 Ma, occurs at Site 689; so the site provides no evidence for the establishment of the psychrosphere at this time. This corroborates similar regional results from an earlier study of benthonic foraminifera. Explanations for this may be related to Late Eocene-Early Oligocene changes in sedimentology and clay-mineralogy (associated with the progressive cooling of the Antarctica) which could have negatively affected abundance and diversity locally at Site 689. Alternatively, by this time, the ostracod fauna could also have been subjected to selective removal (with possible local extinction) of taxa (due to increased ventilation) or to thanatocoenosis dissolution (due to a decrease in temperature and availability of CaCO₃). A further possibility may be related to the fact that Site 689 was at intermediate water depths and may have remained within older water masses near the Eocene/Oligocene boundary. Failing these explanations, the results could indicate that the Late Eocene-Early Oligocene palaeoenvironmental changes in the world oceans were more gradual and occurred over a longer time interval than the global ostracod data show, at least at southern high latitudes.     

Cold-water coral reef frameworks,megafaunal communities and evidence for coral carbonate mounds on the Hatton Bank,north east Atlantic

Offshore banks and seamounts sustain diverse megafaunal communities, including framework reefs formed by cold-water corals. Few studies have quantified environmental effects on the alpha or beta diversity of these communities. We adopted an interdisciplinary approach that used historical geophysical data to identify topographic highs on Hatton Bank, which were surveyed visually. The resulting photographic data were used to examine relationships between megafaunal communities and macrohabitat, the latter defined into six categories (mud, sand, cobbles, coral rubble, coral framework, rock). The survey stations revealed considerable small-scale variability in macrohabitat from exposed Late Palaeocene lava flows to quiescent muddy habitats and coral-built carbonate mounds. The first reported evidence for coral carbonate mound development in UK waters is presented, which was most pronounced near present-day or former sites of topographic change, suggesting that local current acceleration favoured coral framework growth and mound initiation. Alpha diversity varied significantly across macrohabitats, but not between rock and coral rubble, or between smaller grain sized categories of cobbles, sand and mud. Community composition differed between most macrohabitats, and variation in beta diversity across Hatton Bank was largely explained by fine-scale substratum. Certain megafauna were clearly associated with particular macrohabitats, with stylasterid corals notably associated with cobble and rock habitats and coral habitats characterized by a diverse community of suspension-feeders. The visual surveys also produced novel images of deep-water megafauna including a new photographic record of the gorgonian coral Paragorgia arborea, a species not previously reported from Rockall Plateau. Further interdisciplinary studies are needed to interpret beta diversity across these and other environmental gradients on Hatton Bank. It is clear that efforts are also needed to improve our understanding of the genetic connectivity and biogeography of vulnerable deep-water ecosystems and to develop predictive models of their occurrence that can help inform future conservation measures. An erratum to this article can be found at     

Paleocene Thalassinidea colonization in deep-sea environment and the coprolite Palaxius osaensis n. ichnosp. in Southern Costa Rica

Palaxius osaensis n. ichnosp., a new ichnospecies of crustacean coprolite is described. The coprolite is preserved in a 200-m thick Paleocene sequence in Southern Costa Rica that is largely dominated by pillow basalts. The studied sample is part of a seamount formed in the Pacific Ocean that was accreted to the Central American isthmus during the Eocene. The absence of lava vesicles, shallow-water deposits, and detrital sediments in the section suggest that the coprolites were deposited in a deep environment during the first stage of the development of the seamount. This represents one of the deepest occurrences of Thalassinidea coprolites reported in the literature and indicates that the producers of the coprolites, presumably some shrimps, developed the aptitude to colonize abyssal environments at least since Early Tertiary. The crustacean coprolites were encountered at a site which apparently lacked a food supply, although hydrothermal processes are believed to have provided the opportunity for a chemotrophic community to develop on the deepest part of the seamount. P. osaensis n. ichnosp. is also found in Colombia in late Cretaceous shallow-water sediments that notably contain Palaxius caucaensis coprolites (Micropaleontology 41 (1995) 85-88). Occurrences of P. osaensis n. ichnosp. deposited at both shallow and deep levels may possibly be related to an aptitude of some thalassinid organisms to have developed in various biotopes during the late Cretaceous-Paleocene.     

Causes of damage to brachiopods from the Middle Pennsylvanian Naco Formation, central Arizona

The Kohl Ranch locality in the Naco Formation of central Arizona has yielded an abundant and diverse fauna including eight genera of brachiopods and four of sharks including Cochliodus. The most abundant brachiopod, Composita subtilita , was analyzed for predation damage and of 935 specimens 503 (53.7%) were found to show the type of unrepaired crushing previously attributed to shark predation. Reconstruction of the jaw of Cochliodus , however, suggests that it may have been a selective feeder similar to the modern Heterodontus and unlikely therefore to have left so many damaged but uningested specimens. Evidence from specimens collected in situ suggests that the damage mostly occurred post-mortem due to the compaction of the sediments and was not due to the sharks who would have comminuted any prey items taken.     

Piezotolerance of the cytoskeletal structure in cultured deep-sea fish cells using DNA transfection and protein introduction techniques

We used DNA transfection and protein introduction techniques to investigate the pressure tolerance of cytoskeletal structures in pectoral fin cells derived from the deep-sea fish Simenchelys parasiticus (habitat depth, 366–2,630 m). The deep-sea fish cells have G418 resistance. The cell number increased until day 6 of cultivation and all cells had died by day 35 when cultured in 35-mm Petri dishes in medium containing G418. Enhanced yellow fluorescent protein-tagged human β-actin (EYFP-actin) was stably expressed by 1 in 100,000 deep-sea fish cells. Because almost none of the EYFP-actin was incorporated into actin filaments of the cells, we replaced the relatively large EYFP tag with a chemical fluorescent compound and succeeded in incorporating fluorescently labeled rabbit actins into the deep-sea fish actin filaments. Most of the filament structure in the cells with rabbit actin inserted underwent depolymerization when subjected to pressure of 100 MPa for 20 min, in contrast to control cells. There were no differences in the tubulin filament structure between control cells and deep-sea fish cells with fluorescein-labeled bovine tubulin inserted after the application of pressure ranging from 40 to 100 MPa for 20 min.     

Comparative study of the spectral sensitivities of mesopelagic crustaceans

The spectral sensitivities of 12 species of mesopelagic crustaceans were studied by means of electrophysiological recordings. Nine of the species are vertical migrators, while 3 are not, and 9 species possess bioluminescent organs, while 3 are not bioluminescent. All species had a single peak of spectral sensitivity with maxima between 470 nm and 500 nm. There was no apparent correlation between sensitivity maxima and daytime depth distribution, migratory behavior, or the presence or absence of bioluminescent organs. With the exception of the hyperiid amphipod Phronima sedentaria, the spectral sensitivities of these mesopelagic crustaceans demonstrate a better match for maximum sensitivity to bioluminescence than to downwelling light. Accepted: 29 June 1999