Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods

Microbial communities of ancient Mediterranean sapropels, buried sediment layers of high organic matter, were analyzed by most probable number (MPN) approaches. Mineral media containing different carbon sources in sub-millimolar concentrations were used. MPN numbers were elevated in sapropels and at the sediment surface, which mirrored total cell count distributions. Highest MPN counts were obtained with a mixture of different monomeric and polymeric substrates, with amino acids or with long-chain fatty acids as sole carbon sources. These values reached up to 2 x 10(7) cm(-3), representing 3.3% of the total cell count. A total of 98 pure cultures were isolated from the highest positive dilutions of the MPN series, representing the most abundant microorganisms culturable by the methods used. The strains were identified by molecular biological methods and could be grouped into 19 different phylotypes. They belonged to the alpha-, beta-, gamma-, and delta-Proteobacteria, to the Actinobacteria and the Firmicutes. However, about half of the number of isolates was closely related to the genera Photobacterium and Agrobacterium. Regarding the high cultivation success, these organisms can be assumed to be typical sapropel bacteria, representing a substantial part of the culturable indigenous microbial community.     

High Complexity Food Webs in Low-diversity Eastern Pacific Reef–Coral Communities

Community-wide feeding interrelationships in a low-diversity coral reef off the Pacific coast of Panamá (Uva Island reef) demonstrate complex pathways involving herbivore, strong corallivore, and carnivore interactions. Four trophic levels with 31 interguild links are identified in a generalized food web, and documented feeding interrelationships with 287+ species links are portrayed in a coral–corallivore subweb. The importance of trophic groups changes greatly with time, from unknown causes over annual to decadal-scale periods, and during very strong El Niño–Southern Oscillation events such that intermittent intense herbivory by echinoids (Diadema) and corallivory by gastropod mollusks, the crown-of-thorns sea star Acanthaster, hermit crabs, and fishes result in high levels of coral mortality and bioerosion of reef substratum. Intraregional differences in species composition and abundances affecting food-web interactions are briefly described for nonupwelling (Uva Island) and upwelling areas (Pearl Islands) in Panamá. Seasonal upwelling in the Pearl Islands results in high plankton productivity, which likely augments production in invertebrates, fishes, marine mammals, and seabirds, but these pathways still remain largely unquantified. The corallivore Acanthaster is absent from upwelling centers in Panamá and from upwelling and nonupwelling areas in the southern and central Galápagos Islands, and the highly destructive, facultative corallivore Eucidaris galapagensis occurs only in the latter offshore islands and at Cocos Island. Relatively recent declines in the abundances of manta rays, sharks, and spiny lobsters are correlated with, but not necessarily causally linked to, increasing fishing activities in the late 1970s to early 1980s. The extent to which the complex yet highly unstable Uva Island food web is representative of other eastern Pacific coral reef ecosystems remains to be investigated.     

Coral communities of the northwestern Gulf of Aden (Yemen): variation in framework building related to environmental factors and biotic conditions

Coral communities were investigated in the northwestern Gulf of Aden, Yemen, for their composition, structure, and bioconstruction potential. Although no true reef was encountered, high cover coral carpets were found where hard substrate was available. Seven different types of coral communities were differentiated, and both non-framework and framework coral communities were found. Monotypy or oligotypy seem to be consistent characteristics of framework-building coral communities in the study area. Apart from substrate availability, proximity to the upwelling area and exposure were found to be the most important environmental factors influencing coral communities structure, composition, and bioconstruction potential.     

Strategies for Amplification by Polymerase Chain Reaction of the Complete Sequence of the Gene Encoding Nuclear Large Subunit Ribosomal RNA in Corals

The nearly complete nuclear large subunit ribosomal RNA (LSU rRNA) gene in corals was amplified by primers designed from polymerase chain reaction (PCR) strategies. The motif of the putative 3′-terminus of the LSU rRNA gene was sequenced and identified from intergenic spacer (IGS) clones obtained by PCR using universal primers designed for corals. The 3′-end primer was constructed in tandem with the universal 5′-end primer for the LSU rRNA gene. PCR fragments of 3500 bp were amplified for octocorals and non-Acropora scleractinian corals. More than 80% of the Acropora LSU rRNA gene (3000 bp) was successfully amplified by modification of the 5′-end of the IGS primer. Analysis of the 5′-end of LSU rDNA sequences, including the D1 and D2 divergent domains, indicates that the evolutionary rate of the LSU rDNA differs among these taxonomic groups of corals. The genus Acropora showed the highest divergence pattern in the LSU rRNA gene, and the presence of a long branch of the Acropora clade from the other scleractinian corals in the phylogenetic tree indicates that the evolutionary rate of Acropora LSU rDNA might have accelerated after divergence from the common ancestor of scleractinian corals. Received February 17, 2000; accepted June 12, 2000.     

Interspecific variation in sustained swimming ability of late pelagic stage reef fish from two families (Pomacentridae and Chaetodontidae)

 Characteristics of the pelagic stages of reef fishes have generally been investigated at the family level, which may mask important differences among species. Here the variation in sustained swimming ability of the late pelagic stages is examined among species, within two families (Pomacentridae and Chaetodontidae). The pomacentrids displayed a 7.5-fold difference in sustained swimming ability across 24 species, while the chaetodontids displayed a 2-fold difference across 10 species. The variation within the Pomacentridae was not related to pelagic larval duration, post-settlement habitat or taxonomy. There was, however, a significant correlation between sustained swimming ability and total length (TL) of individuals (r=0.435, P<0.0001). Differences in the mean distance swum by pomacentrid species, however, was most strongly related to differences in mean wet weight (r=0.814, P<0.0001). When the mean distance swum by species was scaled with respect to mean TL there was still a strong correlation with mean wet weight (r=0.644, P<0.005). Among chaetodontid individuals TL and sustained swimming ability were not correlated (r=−0.004, P=0.978). Furthermore, sustained swimming ability was not significantly related to the trans-oceanic distribution of species in either family. The variation in sustained swimming ability, however, may contribute to explanations of the observed levels of gene flow within populations. Accepted: 24 November 1997     

Seamounts: identity crisis or split personality?

At present, researchers propose that over 14,000 seamounts exist and, like their terrestrial analogues, function like islands. In addition, seamounts are described as oases, biodiversity hotspots, and lush coral/sponge gardens. Here I discuss the extent to which these tenets regarding seamounts may be inappropriate, suffer from a lack of support, and be over-generalizations of a broad range of environmental types encountered on seamounts. Ultimately, for seamount science to progress, we need to challenge our conventional wisdom on these habitats and the extent to which all seamounts function in a similar manner.
     

A Novel Technique for the Reattachment of Large Coral Reef Sponges

Sponges are dominant components of coral reef ecosystems, often exceeding reef-building corals in abundance. Large sponges, often more than 1 m in diameter, may be hundreds to thousands of years old. When damaged or dislodged, large sponges usually die because they are unable to reattach to the reef substratum. Because suitable methods for reattaching dislodged sponges are lacking, they are typically excluded from coral reef restoration efforts. Here we present a novel technique for the reattachment of large sponges that was tested using the Caribbean Giant barrel sponge, Xestospongia muta . Transplants of X. muta were conducted at 15- and 30-m depth off Key Largo, Florida. Despite the active hurricane season of 2005, 90% of deep and 35% of shallow transplants survived, with nearly 80% reattaching to the substratum and growing after 2.3–3 years. This technique may be generally adapted for securing large sponges in coral reef restoration efforts.     

Habitat selection and the colonization of new territories by Chromis viridis

The settlement and recruitment patterns of Chromis viridis were followed during three consecutive seasons along the reefs of Eilat, Red Sea. The findings, based on intensive field surveys and a translocation experiment, indicated a strong and repeatable preference for some, but not other, colonies of the branching coral Acropora eurystoma; with significantly more larvae settling onto preferred colonies that house conspecific adults and juveniles. Furthermore, these findings showed that, given high recruitment rates, settlement‐site selection could drive migration by adults and older juveniles. As only some C. viridis schools received direct settlement, it was suggested that settlement‐driven migration is responsible for the replenishment of those schools that do not receive settlement and to the colonization of previously unoccupied coral colonies.     

The inshore fish faunas over soft substrates and reefs on the tropical west coast of Australia differ and change with latitude and bioregion

Aim To test the following hypotheses regarding ichthyofaunal compositions along an extensive tropical coastline. The compositions over soft substrates and reefs: (1) consistently differ markedly; (2) change progressively with latitude and temperature through sequential changes in the abundances of certain species; and (3) vary among bioregions, as those regions differ markedly in their environmental characteristics. Location Tropical north‐western Australia. Methods Similarity matrices, derived from percentage contributions of each fish species to catches obtained over soft substrates by trawling and over reefs by trapping at seven regularly spaced sites along 1500 km of coast, were subjected to cluster analysis, non‐metric multidimensional scaling ordination and associated tests. Results In total, 361 species were obtained by trawling and trapping along the tropical coast of north‐western Australia (NWA). Only 56 species were recorded over both soft substrates and reefs, whereas 229 and 76 species were caught exclusively over soft substrates and reefs, respectively. The Leiognathidae, Carangidae and Terapontidae contributed most individuals (62.2%) to catches over soft substrates, whereas the Lethrinidae and Lutjanidae dominated those over reefs (81.9%). The species compositions in both habitats were related to latitude and water temperature. Ichthyofaunal compositions in the Kimberley region differed markedly from those in the Canning/Pilbara regions further south, which, in turn, each had distinct characters. The vast majority of species found over both habitats also occur in the Pacific Ocean to the north. Main conclusions The most important fish families over soft substrates and reefs in inshore marine waters of tropical NWA differ markedly. The ichthyofaunal compositions of both habitats undergo similar patterns of progressive change with latitude, due to site‐staggered changes in the relative abundances of key fish species in their respective habitats. Ichthyofaunal composition in both habitats was found to be influenced by water temperature. The latitudinal trends exhibited by species composition are overlaid on a strong bioregional effect, reflecting the influence of the very different environmental conditions in those bioregions, which include marked differences in such factors as tidal regime, turbidity and whether mangroves are nearby. The important contribution of species with a Pacific affinity was presumably facilitated by the polewards‐flowing Indonesian Throughflow, which links the Pacific Ocean with waters bordering the NWA coast.