Detection of Nitrosomonas spp. by polymerase chain reaction

Abstract A unique genomic DNA fragment was isolated from Nitrosomonas europaea ATCC 19718. Based on the sequence of this fragment, oligonucleotide primers for polymerase chain reaction amplification were prepared which amplify sequences of 775 and 658 bp. The predicted DNA fragments were both amplified from the genome of N. europaea and a Nitrosomonas spp. isolated from a local oxidation pond. The primers failed to amplify DNA from the genomes of the ammonia oxidiser Nitrosolobous multiformis , the nitrite oxidiser Nitrococcus mobilis as well as from the genomes of other unrelated heterotrophic bacteria. These DNA sequences could be amplified from 0.01 ng of N. europaea genomic DNA or from 100 intact cells, and it was possible to detect Nitrosomonas DNA in a DNA mixture extracted from water samples drawn from a local oxidation pond.     

Analysis of the molecular mass heterogeneity of the transferrin receptor in Neisseria meningitidis and commensal Neisseria

Peroxidase-conjugated transferrin was used to detect transferrin receptors both in intact outer membrane vesicles (OMVs) from Neisseria species in a dot blot assay, and in SDS-PAGE-separated OMV proteins after transferring to nitrocellulose membranes. All N. meningitidis strains produced transferrin receptors after culturing in either iron sufficiency or iron restriction although expression was higher in the latter case, whereas only six N. lactamica and two N. sicca (among 20 commensal species) were able to bind transferrin. Molecular mass (MM) of the receptors were mainly between 78 kDa and 85 kDa (87.5% of strains), 12.5% had receptors with MM close to 70 kDa, and 5% showed receptors with MM over 85 kDa. Our results confirm the molecular mass heterogeneity of the transferrin receptors in N. meningitidis, completely disagree with the 'universal' 98 kDa receptor proposed by some authors, and show a low expression of the receptor in commensal Neisseria.     

沙门氏菌荧光实时定量PCR检测试剂的研制及应用

荧光实时定量PCR技术是近年来广泛应用于沙门氏菌快速检测的现代方法之一,本研究建立了检测沙门氏菌快速、敏感、特异以及准确定量的FQ-PCR方法。采用沙门氏菌fimY基因序列,设计特异引物和探针,通过对Taq酶、Mg2 和引物探针浓度等反应体系和条件的优化,然后进行特异性和适用性实验。最优化结果为:Taq酶用量2.5U;Mg2 浓度为3.75×10-3mol/L;引物浓度为0.65×10-6mol/L,探针浓度为0.30×10-6mol/L;循环条件为step1:95℃2min,step2:95℃5s,60℃40s,40cycles。结果表明该FQ-PCR检测试剂具有快速、简单、灵敏度高、特异性强和适用范围广等优点,可应用于食品卫生监管、商品检验检疫以及临床诊断等领域。     

驱除侵袭大质粒pINV对福氏2a志贺氏杆菌2457T影响的比较蛋白质组学研究

将福氏志贺氏杆菌2a 2457T及其驱除侵袭大质粒pINV的菌株培养至对数生长中期,制备了全细胞蛋白质。用双向电泳分离两种细胞蛋白质混合物并进行比较,找出差异点,这些点经过胶内酶切后进行MALDI_TOF质谱鉴定。每个蛋白质点的肽指纹图谱都在福氏志贺氏杆菌2a 2457T株的蛋白质数据库用Mascot进行检索,共发现了10个差异表达的蛋白质。结果显示驱除大质粒后几个参与核酸代谢途径的酶表达量有所上升。其中胞啶/脱氧胞啶脱氨酶、嘌呤核苷磷酸化酶和尿嘧啶核苷磷酸化酶表达量的上升可能造成尿嘧啶和尿（嘧啶核）苷合成的增加。     

Movements of beluga whales (Delphinapterus leucas) in Bristol Bay,Alaska

We describe the annual distribution of beluga whales (Delphinapterus leucas) in Bristol Bay, Alaska, using data from 31 satellite‐linked transmitters during 2002–2011. Bristol Bay has one of the largest and best studied Pacific salmon (Oncorhynchus spp.) fisheries in the world, allowing us to link the seasonal distribution of belugas to that of salmon. During salmon migrations, beluga movements were restricted to river entrances. Belugas generally did not relocate to different river entrances or change bays during peak salmon periods. However, the location of belugas was not related to the number of salmon passing counting towers, suggesting that belugas were either selecting locations that were good for catching salmon or there were simply more salmon than belugas needed to supply their nutritional needs. The distribution of belugas expanded after salmon runs ended, and was greatest in winter when belugas ranged beyond the inner bays, traveling as far west as Cape Constantine. Belugas continued to frequent the inner bays in winter whenever sea ice conditions allowed, e.g., when winds moved sea ice offshore; however, they were never located south of the southern ice edge in open water or outside of Bristol Bay.     

不同品种黑莓鲜果营养成分的比较

对5个黑莓(Rubusspp.)新品种鲜果的营养成分进行了比较分析。结果显示,5个品种黑莓鲜果的糖酸比较低,为3.11~6.18,风味偏酸。VC含量较高,达0.064~0.566 mg.g-1;VE含量为0.013~0.049 mg.g-1,品种间差异较大,以品种‘Triple Crown’的VE含量最高。矿质元素含量较高,其中品种‘Boysen’的Se含量最高,是其他品种的6~13倍;品种‘Young’的K、Ca、Zn和Fe含量都较高。黑莓鲜果含有8种人体必需氨基酸,不同品种黑莓鲜果的总氨基酸含量差异较大,其中品种‘Brazos’的总氨基酸含量最高,可达15.21 mg.g-1。     

东北亚地区几种生长自槭树属上的核菌（英文）

报道了采自东北亚地区的长自槭树属上几种核菌。文中对几种核菌进行了详细的形态描述,提供了显微结构图及与相近种的讨论。其中Eutypella albomaculata作为新种被描述。     

Different strategies of Lotus japonicus, L. corniculatus and L. tenuis to deal with complete submergence at seedling stage

Two main strategies allow plants to deal with submergence: (i) escape from below water by means of shoot elongation, or (ii) remaining quiescent under the water until water subsides and then resume growth. We investigated these strategies in seedlings of Lotus japonicus, L. corniculatus and L. tenuis subjected to control and submergence for 12 days, with a subsequent 30-day recovery period. All three species survived submergence but used different strategies. Submerged seedlings of L. japonicus exhibited an escape strategy (emerging from water) as a result of preferential carbon allocation towards shoot mass and lengthening, in detriment to root growth. In contrast, seedlings of L. corniculatus and L. tenuis became quiescent, with no biomass accumulation, no new unfolding of leaves and no shoot elongation. Upon de-submergence, seedlings of L. japonicus had the lowest recovery growth (a biomass and shoot height 58% and 40% less than controls, respectively), L. corniculatus was intermediate and L. tenuis showed the greatest recovery growth. Previously submerged seedlings of L. tenuis did not differ from their controls, either in final shoot biomass or shoot height. Thus, for the studied species, quiescence appears to be an adequate strategy for tolerance of short-term (i.e., 12 days) complete submergence, being consistent with field observations of L. tenuis colonisation of flood-prone environments.     

Variation in the nutritional value of leaf and stem fractions of nineteen leucaena lines

In two experiments, 2.5-month-old edible regrowth of the genus Leucaena (varying in tolerance to the leucaena psyllid pest attack) were analysed for nutritive value. In Experiment 1, forage of nine lines was separated into young leaves, young stems (within woody fraction < 5 mm diameter), old leaves and old stems (within a woody fraction 5-10 mm diameter) whereas in Experiment 2, forage of the other 10 lines was separated in main stem leaves, branch leaves, young branches, young main stems, old main stems and old branches for analysis. Major differences were recorded between lines and forage fractions. Nutrient contents in dry matter were: nitrogen 0.7-4.8%, phosphorus 0.1-0.3%, potassium 0.2-2.5%, calcium 0.2-1.6%, magnesium 0.1-0.6%, acid detergent fibre 20-63%, lignin 8-23% and in vitro dry matter digestibility 15-69%. The leaves and immature fractions were higher in nitrogen, phosphorus, potassium and digestibility but lower in calcium, magnesium and fibre. Nutrient content in L. Leucocephala lines exceeded that in L. esculenta, L. diversifolia, leucaena hybrids and the composites. Based on the data, a management strategy that will promote young growth is suggested as appropriate for high quality forage production.     

冷却猪肉中气单胞菌生长预测模型的建立和检验

为探讨冷却猪肉中气单胞菌的生长规律,将气单胞茵接种到经过80℃无菌水灭菌的冷却猪肉中,构建Gompertz和Baranyi初级模型来描述气单胞菌在不同温度下的生长状况。结果表明：修正的Gompertz模型对气单胞菌生长曲线的拟合效果优于Baranyi模型,R2均在0．97以上。应用平方根模型和Arrhenius模型对由修正的Gompertz模型得出的最大比生长速率进行拟合,所得平方根模型拟合效果略优于Arrhenius模型。实验所建二级模型能预测0-35℃贮藏条件下气单胞菌的生长。