Application of the restriction landmark genomic scanning (RLGS) method to rice cultivars as a new fingerprinting technique

The restriction landmark genomic scanning (RLGS) method was applied to rice, using two Japanese cultivars, Nipponbare and Koshihikari, and a Chinese landrace, LiuZhou'Bao'Ya'Zao'. More than 3000 landmarks were detected as spots on the individual autoradiograms of each cultivar. Nipponbare and LiuZhou' Bao'Ya'Zao' showed apparently different RLGS profiles, from which the genetic similarity (GS) between them was estimated as 0.344. Although the two Japanese cultivars, Nipponbare and Koshihikari showed quite similar RLGS profiles, they were easily distinguished on the basis of the presence or absence of specific spots; the GS value between them was calculated as 0.980. The RLGS method is shown to be a powerful fingerprinting technique, especially for the classification and identification of cultivars in rice and probably in other crops as well.     

Protein Diversity and Cultivar Identification (Review)

Diversity of seed proteins and isozymes has been widely used for identification of crop cuhivars and evaluation of seed qualities, such as the bread-making potential of wheat, malting and brewing capacity of barley. After elucidation of the rationale for the use of biochemical methods, more attention was paid to various electrophoretic and electrofocusing methods used in identification of different crops which were arranged in the following sequence: selfed or inbred species, out-or cross- pollinating species, Fi hybrids and asexually propagated clones. Recent progress on the application of some new techniques including monoclonal antibody, high performance liquid chromatography and restriction fragment length polymorphism was briefly described.     

Genetic variation in cultivars of diploid ryegrass,Lolium perenne andL. multiflorum,at five enzyme systems

Summary Samples of approximately 100 plants from each of 22 populations ofLolium perenne representing 15 cultivars, and from 13 populations ofLolium multiflorum representing six cultivars were scored for iso-zyme variants in five enzyme systems, PGI, GOT, ACP, PGM and 6-PGD. From the individual banding patterns a genetic interpretation of the variation was formulated and population studies of the resulting six polymorphic enzyme loci were performed. No strong indications of partial selfing was found since at four of the six loci,Pgi 2, Got 3, Pgm 1 andPgd 1, the genotypic proportions were in correspondence with the Hardy-Weinberg expectations. This indicated, further, that the genetical interpretations of the banding patterns might be correct. Deviations from Hardy-Weinberg proportions forAcp 1 andGot 2 indicated presumably selection working on the linkage group including these loci. Gametic phase disequilibrium was observed betweenPgi 2 andPgd 1 for populations of one cultivar. These results were discussed in relation to the variation expected within a cultivar.     

Recent lethal yellowing outbreak: why is the Malayan Yellow Dwarf Coconut no longer resistant in Jamaica?

In Jamaica, the Maypan, a hybrid of Malayan Yellow Dwarf (MYD) and Panama Tall coconut, previously considered highly resistant, is currently being devastated by an epidemic outbreak of lethal yellowing disease. There are several possible causes for this change. In this study, we checked that affected planting material in Jamaica is genetically the same as the material shown to be resistant. We compared the deoxyribonucleic acid (DNA) of MYD sampled in four locations in Jamaica with a reference DNA of the same cultivar collected in five different countries. The results of our analyses showed more variation at 34 simple sequence repeat loci in Jamaica than in the rest of the world providing clear evidence for the presence of about 16% of alleles that do not match the usual typical MYD genotype. These alleles appear to have already been present in the introduced germplasm. This rules out a possible cause of the new outbreak: The observed heterogeneity may have caused some loss of resistance but is insufficient to explain a massive outbreak of the disease.     

Microsatellite analysis of Latial Olea europaea L. cultivars

Olea europaea L. is one of the oldest domesticated tree species. O. europaea varieties cannot be confused because they are very different in morphology, genetics, and secondary metabolite content. It is important to study and establish the genetic structure of vegetal cultivars to better distinguish them, to solve past misclassification, to preserve plant biodiversity, and to increase their use, diffusion, selection, resistance to adversities, marketing, and scientific applications. Five simple sequence repeat loci (DCA-3, DCA-9, UDO99-9, UDO99-35, and EMO-3) were used to differentiate 39 individuals, representing 13 olive cultivars sampled in Latium (Central Italy). The markers showed a high discrimination power and were able to differentiate 39 alleles. Observed heterozygosity ranged from 0.538 at locus UDO99-9 to 1 at locus UDO99-35, with a mean value of 0.784. DCA loci were the most informative ones. Sample clustering, based on their genetic distance and similarity values, produced a phylogenetic network that has shown a unique major group of cultivars, composed of two sub-branches, and two independent taxa.     

莲的生态学特性初步观察

作者从莲的不同品种,土壤的pH值、水位的调节、光照和温度等方面进行了不同生态条件的栽培观察。试验结果表明:莲的不同品种按其生态习性,可分为深水、浅水及缸盆钵植三个栽培生态类型。     

Evaluation of cultivar-testing locations in sugarcane

Summary Selection of test locations, representative of conditions and practices of an area can be a challenging process in a breeding program. Data from two groups of sugarcane (trispecies hybrids of Saccharum sp.) cultivar experiments in Florida were analyzed to determine if relative cultivar response at any two of six current locations was sufficiently similar so that at least one location could be replaced by a location with a different environment. The parameter analyzed was metric tons per ha of sugar (THS). To determine similarity between location pairs for all cultivars within each group of cultivars, an unbiased stability-variance parameter ( ) developed by Shukla was used. After identified similar location pairs, single degree of freedom interactions were calculated for important cultivars to determine which of the location pairs identified by contained the two most similar locations. Use of the above procedure can assist in making optimum location assignments in a breeding program.Cooperative investigation of the U.S. Sugarcane Field Stn., Canal Point, FL; and University of Florida, Everglades. Res. and Educ. Ctr., Belle Glade, FL, USA     

Kinetics of zinc uptake by two rice cultivars

Summary Rice (Oryzae sativa L.) cultivars differ widely in their susceptibility to zinc (Zn) dificiency. Excised root apices of cv IR26 actively absorbed Zn at a rate twice that of cv M101 roots. This difference in Zn uptake rates could not be attributed to greater root surface area in cv IR26 as compared to cv M101. The maximum rates of Zn uptake (Vmax) and the Km values also differed markedly between these two cultivars. Roots of cv M101 have a two-fold greater affinity for Zn than do those of cv IR26. Leaf blade tissues of IR26 and M101 rice absorbed Zn at similar rates. Rice cv IR26 readily develops Zn deficiency symptoms in hydroponic culture but cv M101 rarely does so.     

Differential response of six cowpea (Vigna unguiculata (L.) Walp) cultivars to liming in an ultisol

Summary The differential response of six cowpea (Vigna unguiculata (L.) Walp) cultivars to liming was assessed in a greenhouse trial using an Ultisol (Typic Paleudult) from southeastern Nigeria. Lime rates from 0 to 5.0 t/ha were applied to give a range of soil pH, determined in 11 soil/water from 4.25 to about 7.0. Without liming, relative dry matter yields of tops ranged between 46.6 and 76.8 percent. Significant yield responses to the first lime increment (0.5 t/ha) were observed particularly in the less tolerant cultivars and maximum yields were generally obtained with application of 1.6 to 2.5 t/ha lime.Among the six cultivars, TVu 4557 and Ife Brown were most tolerant, Vita-1 and Vita-3 were moderately tolerant, and TVu 1977-OD and TVu 4552 were least tolerant to soil acidity. The latter two cultivars were the most poorly nodulated when grown in the unlimed soil. The first lime increment enabled excellent nodulation to be achieved in all cultivars. Nitrogen analyses on tops confirmed the visual symptoms of nitrogen deficiency in two cultivars (Vita-1, TVu 1977-OD) grown in the unlimed soil. Analysis of data on chemical composition of plant tops and chemical soil characteristics gave indications that aluminium toxicity is the major growth limiting factor for cowpeas in this soil.This study, albeit with a limited range of cowpea germplasm clearly indicates that cowpea possesses considerable potential as a grain legume on strongly acid soils (pH<5.0), even in circumstances where lime is not available. Low rates of lime (0.5 t/ha or less) will greatly expand the available choice of cultivars.     

Genetic linkage mapping in peach using morphological,RFLP and RAPD markers

We have constructed a genetic linkage map of peach [Prunus persica (L.) Batsch] consisting of RFLP, RAPD and morphological markers, based on 71 F₂ individuals derived from the self-fertilization of four F₁ individuals of a cross between New Jersey Pillar and KV 77119. This progeny, designated as the West Virginia (WV) family, segregates for genes controlling canopy shape, fruit flesh color, and flower petal color, size and number. The segregation of 65 markers, comprising 46 RFLP loci, 12 RAPD loci and seven morphological loci, was analyzed. Low-copy genomic and cDNA probes were used in the RFLP analysis. The current genetic map for the WV family contains 47 markers assigned to eight linkage groups covering 332 centi Morgans (cM) of the peach nuclear genome. The average distance between two adjacent markers is 8 cM. Linkage was detected between Pillar (Pi) and double flowers (Dl) RFLP markers linked to Pi and flesh color () loci were also found. Eighteen markers remain unassigned. The individuals analyzed for linkage were not a random sample of all F₂ trees, as an excess of pillar trees were chosen for analysis. Because of this, Pi and eight other markers that deviated significantly from the expected Mendelian ratios (e.g., 121 or 31) were not eliminated from the linkage analysis. Genomic clones that detect RFLPs in the WV family also detect significant levels of polymorphism among the 34 peach cultivars examined. Unique fingerprint patterns were created for all the cultivars using only six clones detecting nine RFLP fragments. This suggests that RFLP markers from the WV family have a high probability of being polymorphic in crosses generated with other peach cultivars, making them ideal for anchor loci. This possibility was examined by testing RFLP markers developed with the WV family in three other unrelated peach families. In each of these three peach families respectively 43%, 54% and 36% of RFLP loci detected in the WV family were also polymorphic. This finding supports the possibility that these RFLP markers may serve as anchor loci in many other peach crosses.