A Spectroscopic View of Some Recent Advances in the Study of Blue Light Photoreception*

The blue to UV-A region of the spectrum, spanning the region of about 320–520 nm, strongly influences the growth and development of plants and fungi. Photomorphogenesis in plants is, to a great extent, controlled by phytochrome, but there are unique contributions of the blue region, which cannot be duplicated by any amount of red light. Phototropism is, with few exceptions, a purely blue light response. In fungi, the blue region dominates the photocontrol of growth and development, though some red light effects have been reported. Many blue light action spectra fit the definition of cryptochrome, a pigment class defined by its UV-A and blue peaks. The action spectrum, if measured to sufficient resolution, displays several minor maxima or shoulders in the blue region which call to mind the vibrational levels of carotenoids and flavins. Recent molecular genetic studies, as well as photobiological work, have shown that some cryptochromes are related to the DNA repair enzyme photolyase, while others appear genetically and spectroscopically distinct. In this review, we have applied established criteria from photobiology, in particular, comparison of action spectra with absorption spectra, to these recent results. It is apparent that photolyase homologs such as CRY1 can explain the blue light portion of the action spectrum for hypocotyl elongation, assuming participation of the oxidized flavin. In fungi, the photoreceptor question remains open. Identification of the nph1 gene in Arabidopsis may soon lead to a photoreceptor for higher plant phototropism. Also, we present a possible solution to the most recent version of the long-standing flavin-carotenoid controversy, the zeaxanthin hypothesis for higher plant phototropism. In conclusion, there appear to be at least three classes of cryptochromes.     

Linear motifs in the C-terminus of D. melanogaster cryptochrome

The C-terminus of cryptochrome (CRY) regulates light responses in Drosophila. These include the light-dependent binding of Drosophila dCRY to the clock proteins PERIOD and TIMELESS in a yeast two-hybrid system, which we proved to be a convenient and reliable readout of the behavior of dCRY in vivo. In this study, we present a combination of in silico analysis and experimental validation in yeast, to identify novel functional motifs in the C-terminal region of dCRY. Our results suggest that linear motifs are present in this small region, which is a likely hotspot for molecular interactions.     

Isolation and characterization of homologues of plant blue-light photoreceptor (cryptochrome) genes from the fern Adiantum capillus-veneris

Many blue-light mediated physiological responses have been studied in the fern Adiantum capillus-veneris. We have isolated genomic clones encoding sequences similar to those encoding blue-light photoreceptors (cryptochromes) in higher plants using the Arabidopsis CRY1 cDNA as a probe, and these positive clones fall into five independent groups. Using RACE procedures, we obtained full-length cDNA sequences for three of these five groups. The deduced amino acid sequences include the photolyase-homologous domain in the N-terminal half, and they also contain a C-terminal extension of about 200 amino acids in length. These structural features indicate that the genes indeed encode Adiantum cryptochromes and represent a small gene family having at least three members. Received: 16 February 1998 / Accepted: 26 April 1998     

Role of Bacopa monnieri in the temporal regulation of oxidative stress in clock mutant (cryb) of Drosophila melanogaster

Accruing evidences imply that circadian organization of biochemical, endocrinological, cellular and physiological processes contribute to wellness of organisms and in the development of pathologies such as malignancy, sleep and endocrine disorders. Oxidative stress is known to mediate a number of diseases and it is notable to comprehend the orchestration of circadian clock of a model organism of circadian biology, Drosophila melanogaster, under oxidative stress. We investigated the nexus between circadian clock and oxidative stress susceptibility by exposing D. melanogaster to hydrogen peroxide (H₂O₂) or rotenone; the reversibility of rhythms following exposure to Bacopa monnieri extract (ayurvedic medicine rich in antioxidants) was also investigated. Abolishment of 24 h rhythms in physiological response (negative geotaxis), oxidative stress markers (protein carbonyl and thiobarbituric acid reactive substances) and antioxidants (superoxide dismutase, catalase, glutathione-S-transferase and reduced glutathione) were observed under oxidative stress. Furthermore, abolishment of per mRNA rhythm in H₂O₂ treated wild type flies and augmented susceptibility to oxidative stress in clock mutant (cry^b) flies connotes the role of circadian clock in reactive oxygen species (ROS) homeostasis. Significant reversibility of rhythms was noted following B. monnieri treatment in wild type flies than cry^b flies. Our experimental approach revealed a relationship involving oxidative stress and circadian clock in fruit fly and the utility of Drosophila model in screening putative antioxidative phytomedicines prior to their use in mammalian systems.     

Mosquito cryptochromes expressed in Drosophila confer species-specific behavioral light responses

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Optogenetic toolkit for precise control of calcium signaling

Calcium acts as a second messenger to regulate a myriad of cell functions, ranging from short-term muscle contraction and cell motility to long-term changes in gene expression and metabolism. To study the impact of Ca²⁺-modulated ‘ON’ and ‘OFF’ reactions in mammalian cells, pharmacological tools and ‘caged’ compounds are commonly used under various experimental conditions. The use of these reagents for precise control of Ca²⁺ signals, nonetheless, is impeded by lack of reversibility and specificity. The recently developed optogenetic tools, particularly those built upon engineered Ca²⁺ release-activated Ca²⁺ (CRAC) channels, provide exciting opportunities to remotely and non-invasively modulate Ca²⁺ signaling due to their superior spatiotemporal resolution and rapid reversibility. In this review, we briefly summarize the latest advances in the development of optogenetic tools (collectively termed as ‘genetically encoded Ca²⁺ actuators’, or GECAs) that are tailored for the interrogation of Ca²⁺ signaling, as well as their applications in remote neuromodulation and optogenetic immunomodulation. Our goal is to provide a general guide to choosing appropriate GECAs for optical control of Ca²⁺ signaling in cellulo, and in parallel, to stimulate further thoughts on evolving non-opsin-based optogenetics into a fully fledged technology for the study of Ca²⁺-dependent activities in vivo.