Considerations about the chirality of the saturated six-membered rings with two or more heteroatoms

The chirality of the title heterocycles is discussed considering their genesis by desymmetrization of the corresponding adamantanes. Some rules for the specification of the absolute configurations of the enantiomers (R or S) for this type of compounds are proposed. © 1996 Wiley-Liss, Inc.     

Neuronal KGB-1 JNK MAPK signaling regulates the dauer developmental decision in response to environmental stress in Caenorhabditis elegans

In response to stressful growth conditions of high population density, food scarcity, and elevated temperature, young larvae of nematode Caenorhabditis elegans can enter a developmentally arrested stage called dauer that is characterized by dramatic anatomic and metabolic remodeling. Genetic analysis of dauer formation of C. elegans has served as an experimental paradigm for the identification and characterization of conserved neuroendocrine signaling pathways. Here, we report the identification and characterization of a conserved c-Jun N-terminal Kinase-like mitogen-activated protein kinase (MAPK) pathway that is required for dauer formation in response to environmental stressors. We observed that loss-of-function mutations in the MLK-1-MEK-1-KGB-1 MAPK pathway suppress dauer entry. A loss-of-function mutation in the VHP-1 MAPK phosphatase, a negative regulator of KGB-1 signaling, results in constitutive dauer formation, which is dependent on the presence of dauer pheromone but independent of diminished food levels or elevated temperatures. Our data suggest that the KGB-1 pathway acts in the sensory neurons, in parallel to established insulin and TGF-β signaling pathways, to transduce the dauer-inducing environmental cues of diminished food levels and elevated temperature.     

外来入侵植物凤眼莲遥感监测方法研究

【目的】凤眼莲作为我国典型的外来入侵物种之一,其大规模入侵对水生生态系统破坏严重。目前在不同生境下开展的凤眼莲遥感监测方法研究精度有所不同。本研究对比了不同分类方法,拟筛选出适合我国南方地区凤眼莲的分类方法。【方法】基于Sentinel-2、Landsat8 OLI多光谱影像,选择最大似然和支持向量机监督分类、决策树分类以及植被指数阈值分类方法分别对海南省5个水库的凤眼莲遥感分类,依据无人机可见光影像目视结果对不同方法的分类精度进行评价。【结果】基于凤眼莲时相特征的决策树分类精度最高,总体精度达到90%以上;在基于光谱特征的分类方法中,最大似然监督分类的用户精度为77.88%、制图精度为72.44%,支持向量机分类的用户精度和制图精度分别达到87.00%和84.48%。【结论】基于时相特征与光谱特征的决策树分类方法精度高于仅基于光谱特征的监督分类方法,简单植被指数阈值方法难以区分不同生境内的凤眼莲,研究结果可为我国南方地区凤眼莲遥感监测与预警提供依据。     

From NMR chemical shifts to amino acid types: Investigation of the predictive power carried by nuclei

An approach to automatic prediction of the amino acid type from NMR chemical shift values of its nuclei is presented here, in the frame of a model to calculate the probability of an amino acid type given the set of chemical shifts. The method relies on systematic use of all chemical shift values contained in the BioMagResBank (BMRB). Two programs were designed, one (BMRB stats) for extracting statistical chemical shift parameters from the BMRB and another one (RESCUE2) for computing the probabilities of each amino acid type, given a set of chemical shifts. The Bayesian prediction scheme presented here is compared to other methods already proposed: PROTYP RESCUE and PLATON and is found to be more sensitive and more specific. Using this scheme, we tested various sets of nuclei. The two nuclei carrying the most information are C(beta) and H(beta), in agreement with observations made in Grzesiek and Bax, 1993. Based on four nuclei: H(beta), C(beta), C(alpha) and C', it is possible to increase correct predictions to a rate of more than 75%. Taking into account the correlations between the nuclei chemical shifts has only a slight impact on the percentage of correct predictions: indeed, the largest correlation coefficients display similar features on all amino acids.     

Conspecific pilferage but not presence affects Merriam's kangaroo rat cache strategy

We investigated the effects of pilferage on caching behaviorin the Merriam's kangaroo rat by manipulating two factors associatedwith pilferage: the presence of a conspecific, and the opportunityfor pilferage. In one experiment we assessed animals in either"Stealer" or "Victim" roles and measured changes in caching,space use, and behavior after caches were pilfered. Victimsshifted from a majority scatter-hoarding to a majority larder-hoardingstrategy after their caches were pilfered by the Stealer. InExperiment 2, we measured changes after exposure to a conspecificwhen there was no pilferage, with or without prior exposureto pilferage from Experiment 1. Merriam's kangaroo rats werevigilant when a conspecific was present, but did not changecache strategy. Prior exposure did not have any major effecton caching or behavior. Food storage is an economic decisionthat is often made by a solitary forager. Our results suggestthat social competition nonetheless influences such economic decisions, even in a nonsocial forager.     

Offspring food allocation by parents and helpers in a cooperative mammal

In cooperatively breeding species, helpers and parents commonlyface two decisions when they find a food item: first, whetherto feed the item to a young group member or to eat it themselves;and second, which offspring to feed. Little is known aboutthe factors that influence these decisions in cooperative mammals,though optimal foraging theory provides a basis for a rangeof predictions. In this article we describe pup feeding behaviorby helpers and parents in a cooperative mongoose, the meerkat(Suricata suricatta). When meerkat pups begin accompanyingthe group, they beg food from older group members, who digup dispersed prey items. As predicted, the probability of aprey item being fed to a pup shows a positive relationship with prey size and a negative relationship with pup distance.Meerkats apparently follow a "feed the nearest pup rule" andare more likely to feed the nearest pup if it is hungry. Hungrierpups beg more and follow older group members more closely.Across all age categories, females feed pups more frequentlythan males, both in terms of the relative frequency of feeds,and the proportion of prey biomass found by each individualthat is fed to pups. Females also feed female pups significantlymore than male pups, while males feed pups of both sexes equally.These sex biases in feeding contributions may result from femalegroup members benefiting more than males from higher pup survival,and in particular higher female pup survival, because femalesare the philopatric sex.     

Some insights into protein structural class prediction

It has been quite clear that the success rate for predicting protein structural class can be improved significantly by using the algorithms that incorporate the coupling effect among different amino acid components of a protein. However, there is still a lot of confusion in understanding the relationship of these advanced algorithms, such as the least Mahalanobis distance algorithm, the component-coupled algorithm, and the Bayes decision rule. In this communication, a simple, rigorous derivation is provided to prove that the Bayes decision rule introduced recently for protein structural class prediction is completely the same as the earlier component-coupled algorithm. Meanwhile, it is also very clear from the derivative equations that the least Mahalanobis distance algorithm is an approximation of the component-coupled algorithm, also named as the covariant-discriminant algorithm introduced by Chou and Elrod in protein subcellular location prediction (Protein Engineering, 1999; 12:107-118). Clarification of the confusion will help use these powerful algorithms effectively and correctly interpret the results obtained by them, so as to conduce to the further development not only in the structural prediction area, but in some other relevant areas in protein science as well.     

Optimization of the chiral separation of some 2-arylpropionic acids on an avidin column by modeling a combined response

The enantiomeric separation of some nonsteroidal antiinflammatory drugs was investigated on an avidin column. An experimental design approach (central composite design) was used to evaluate the effects of three method parameters (pH, concentration of organic modifier, and buffer concentration) on the analysis time and the resolution, as well as to model these responses. This revealed that the organic modifier concentration and sometimes the pH are significant parameters to control because of their influence on both analysis time and resolution. Furthermore, the central composite design results were combined in a multicriteria decision-making approach in order to obtain a set of optimal experimental conditions leading to the most desirable compromise between resolution and analysis time.     

Evidence for a pre-restriction point Cdk3 activity

We have examined the activity of cyclin-dependent kinase 3 (cdk3) during G1-phase of the cell cycle in Chinese Hamster Ovary (CHO) fibroblasts. Histone H1 kinase activity associated with anti-cdk3 immunoprecipitates peaked during a brief window of time, 2-3 h prior to the restriction point. In vitro cdk3 activity was sensitive to roscovitine, a drug previously shown to inhibit cdks 1, 2, and 5, but not cdk4 or 6. Early G1-phase activation of cdk3 was downregulated by treatment of cells with MG132, an inhibitor of the proteasome, and by the protein synthesis inhibitor cycloheximide. These results provide evidence for a pre-restriction point cdk3 activity that requires both the synthesis of a regulatory subunit and degradation of an inhibitor.     

Analysis of bilateral inverse symmetry in whole bacterial chromosomes

The positions of the 64 DNA tri-nucleotides (triplets) along the Borrelia burgdorferi chromosome were determined and cumulative position plots (CPP) were obtained. Analysis of CPP for complementary triplets revealed close correlations in complementary triplet frequencies (CTF) between opposing leading and lagging strands. Such bilateral inverse symmetry (BIS) applied also to complementary mono- and di-nucleotides and to some >3 n-tuples. At the level of individual bases BIS explains Chargaff's second parity rule for whole bacterial chromosomes. Using shuffled control sequences we show that single-base BIS was not the source of higher-order BIS. Analysis of CTF in 45 other chromosomes suggests that BIS is a general property of eubacteria. BIS at the various levels may be due to the very similar numbers of codons used in chromosomal halves. Evolutionarily, BIS could have resulted from asymmetric substitution of bases combined with genetic rearrangements. However, the provocative theoretical alternative of whole-genome inverse duplication is here considered.