Contrasting genetic variation and differentiation on Hainan Island and the Chinese mainland populations of Dacrycarpus imbricatus (Podocarpaceae)

Dacrycarpus imbricatus is a vulnerable conifer in China whose geographical distribution encompasses large island but small mainland populations, providing a framework for contrasting the patterns of population genetic composition. In this study, seven populations on Hainan Island and the Chinese mainland were sampled throughout its distribution range and assessed using ISSR. The results did not show significant differences neither in genetic variation nor in genetic differentiation between the island and the mainland populations (P > 0.05). Severe bottlenecks were identified at population, island/mainland as well as range-wide scales. A relatively high level of variation but a low degree of differentiation was revealed. Ecological and life traits were suggested to play main roles in the shaping of genetic variation pattern. Of them long generation times could have exerted a lagging effect on both the genetic variation and differentiation. Our findings may contribute to establish management practices.     

Grazing with Galloway cattle for floodplain restoration in the Syr Valley, Luxembourg

Three years after a river restoration scheme in the Syr Valley (Luxembourg) we investigated habitat development and habitat use of Galloway cattle deployed in a low-intensity grazing system on a permanent floodplain pasture. Habitats were delimited with a mobile GPS/GIS mapping system and their spatial development was assessed over three consecutive years. During these three years, the patches of the six habitats decreased to 40% of mean initial size, and a rapid net area expansion of wetland habitats (large sedge swamps: +100%, marsh and tall forb grasslands: +43%) was observed. The behavioural patterns and grazing preferences of the cattle were observed directly during the vegetation period in June, August and November. These observations were complemented by a transect analysis of cattle impact indicators in June and November. The cattle grazed the different habitats very selectively, as they preferred the mesophilic, and ruderal grasslands 1.6, and 5.6 times more than expected respectively. During the growing season, the grazing niche breadth declined (3.92 in June to 2.68 in November), and less preferred forage habitats like large sedge swamps were grazed primarily in the autumn. We used bite and step rates to investigate grazing intensity by habitat type. During summer, grazing intensity correlated with forage quality in the different habitat patches, whereas in autumn it was obviously influenced by the effort required to access the desired forage plants in a given habitat. The impact indicators revealed a matter transfer from riparian areas to the valley edge. Here, we give a first insight into habitat development and habitat use of Galloway cattle in a recently restored floodplain area and derive recommendations for the adaptive management of future projects.     

Distribution patterns of threatened endemic plants in Turkey: A quantitative approach for conservation

Documenting the basic patterns of biodiversity and accurately determining the priority areas are the first steps for conservation studies. Threatened species and IUCN (International Union for Conservation of Nature) Red Lists are among the widely used tools to identify protected areas. Turkey is one of the most important biodiversity centres in the world. The plant diversity of Turkey with over 30% endemic species of approximately 12000 natural vascular plant taxa is well documented through use of a Grid System. However, Turkey has suffered heavy anthropogenic effects having been a settlement for many civilisations throughout the history of humankind. Therefore, Turkey needs a quantitative evaluation of the importance of different grid squares for conserving plant diversity. This paper offers a quantitative approach for aiding the identification of priority areas for biodiversity conservation by analysing the threatened plants in each grid square in terms of endemism, risk categories and distribution characteristics. The grid squares (nearly 220 x 170 km²) were then classified within four different groups in terms of their conservation importance. This national-level information can be used for further research and decision-making processes for conservation planning.     

Deep intra-uterine artificial inseminations using cryopreserved spermatozoa in beluga (Delphinapterus leucas)

Artificial insemination (AI) with liquid-stored spermatozoa and sperm cryopreservation using directional freezing (DF) have been successful in the beluga. This study built on this foundation to develop a deep intra-uterine AI technique with frozen-thawed semen in beluga. Forty-two ejaculates from one male were cryopreserved using DF technology and subsequently used for 10 insemination attempts with seven females. Percentage pre- and post-thaw progressive motility and viability were (mean ± SD) 73.0 ± 12.2, 38.4 ± 8.8, 88.0 ± 0.1, and 59.3 ± 15.7%, respectively. A series of GnRH injections (3 x 250 μg, IV, 1.5 to 2 h apart) were used to induce ovulation, once a growing follicle >2.5 cm in diameter was visualized via trans-abdominal ultrasonography. Artificial insemination was performed at 30.1 ± 3.8 h post-initial GnRH injection with semen deposited in the uterine horn, 92.6 ± 16.2 cm beyond the genital opening using a flexible endoscope. The external cervical os (cEOS) was located beyond a series of 5 to 10 vaginal rings, 44.8 ± 9.3 cm from the external genital opening. The internal bifurcation of the uterus was 27 ± 6.8 cm beyond the cEOS. Ovulation occurred at 8.5 ± 7.6 h post-AI. Two of 10 inseminations (20%) resulted in pregnancy. The first pregnancy resulted in twins; both calves were born 442 d after AI, with one surviving. The second pregnancy is ongoing. These findings represent the first successful application of AI using frozen-thawed semen in beluga, and are important examples of how assisted reproductive technologies can provide tools for the global management of threatened species.     

Land Use and Small Mammal Predation Effects on Shortgrass Prairie Birds

ABSTRACT Grassland birds endemic to the central shortgrass prairie ecoregion of the United States have experienced steep and widespread declines over the last 3 decades, and factors influencing reproductive success have been implicated. Nest predation is the major cause of nest failure in passerines, and nesting success for some shortgrass prairie birds is exceptionally low. The 3 primary land uses in the central shortgrass prairie ecoregion are native shortgrass prairie rangeland (62%), irrigated and nonirrigated cropland (29%), and Conservation Reserve Program (CRP, 8%). Because shortgrass–cropland edges and CRP may alter the community of small mammal predators of grassland bird nests, I sampled multiple sites on and near the Pawnee National Grasslands in northeast Colorado, USA, to evaluate 1) whether small mammal species richness and densities were greater in CRP fields and shortgrass prairie–cropland edges compared to shortgrass prairie habitats, and 2) whether daily survival probabilities of ground-nesting grassland bird nests were negatively correlated with densities of small mammals. Small mammal species richness and densities, estimated using trapping webs, were generally greater along edges and on CRP sites compared to shortgrass sites. Vegetation did not differ among edges and shortgrass sites but did differ among CRP and shortgrass sites. Daily survival probabilities of artificial nests at edge and CRP sites and natural nests at edge sites did not differ from shortgrass sites, and for natural nests small mammal densities did not affect nest survival. However, estimated daily survival probability of artificial nests was inversely proportional to thirteen-lined ground squirrel (Spermophilus tridecemlineatus) densities. In conclusion, these data suggest that although land-use patterns on the shortgrass prairie area in my study have substantial effects on the small mammal community, insufficient data existed to determine whether land-use patterns or small mammal density were affecting grassland bird nest survival. These findings will be useful to managers for predicting the effects of land-use changes in the shortgrass prairie on small mammal communities and avian nest success.     

Feeding Ecology of Ring-Necked Pheasant and Northern Bobwhite Chicks in Conservation Reserve Program Fields

ABSTRACT Gamebird chick survival is dependent on invertebrate availability, and the ability to access insect prey is an important characteristic defining brood habitat quality. Different mixes of warm-season grasses and forbs were established to improve the habitat quality of fields enrolled in the Conservation Reserve Program (CRP) for gamebirds in the Southern Plains. We analyzed the feeding ecology of human-imprinted, 4- to 10-day-old ring-necked pheasant (Phasianus colchicus) and northern bobwhite (Colinus virginianus) chicks in wheat fields and 4 types of conservation practices (CP) fields enrolled in CRP (CP10, improved CP10, CP2, and CP25) in western Kansas, USA, during June and July, 2004 and 2005. Foraging rates were greatest for bobwhite chicks in improved CP10 and CP25 fields and greatest for pheasant chicks in CP10 and CP25 fields. Vegetation characteristics such as bare ground cover appear to have a significant impact on insect selection, because the diet was more diverse for both species in fields with more bare ground. The CP25 fields provided the best combination of mobility and diet breadth for both species. Although herbicide-treated wheat fields had low feeding rates, we determined non-herbicide-treated fields (i.e., weedy wheat) provided easy mobility and feeding rates similar to CRP fields. We suggest that management of vegetation to benefit gamebirds does not affect species equally. Feeding rates of bobwhite chicks were sensitive to vegetation-influenced mobility. Management of CRP fields for both pheasant and bobwhite chicks can be reconciled by practices that permit more open space at ground level, such as light disking or burning, to permit easier movement for chicks.     

The distribution of genetic variation in Norway spruce (Picea abies Karst.) populations in the western Alps

Aim  In order to look for a possible centre of survival for the Norway spruce ( Picea abies Karst.) in the south-western Alps, six natural populations of this area were investigated by means of genetic markers in order to assess the degree and the distribution of genetic diversity within the species.
Location  Western and South-western Alps.
Methods  Populations were genotyped using seven simple sequence repeat (SSR) markers. Basic population genetics parameters were estimated and the amount of genetic differentiation calculated.
Results  A large amount of variability was found (0.59 <  H _e < 0.67); genetic differentiation as measured by F _ST was 0.05, close to other similar studies; no isolation by distance was detected by a Mantel test. Analysis of molecular variance confirmed a high degree of variability within populations and a low degree of variability among populations. Finally, the number of populations from which those observed could have arisen was estimated by Bayesian analysis.
Main conclusions  The results presented here suggest that the present populations derive their genetic make-up from three inferred clusters. The possible existence in this area of a relict/refuge population during the last glaciation is discussed.     

Tests for Genetic Differentiation

When testing for genetic differentiation the joint null hypothesis that there is no allele frequency difference at any locus is of interest. Common approaches to test this hypothesis are based on the summation of χ² statistics over loci and on the Bonferroni correction, respectively. Here, we also consider the Simes adjustment and a recently proposed truncated product method (TPM) to combine P‐values. The summation and the TPM (using a relatively large truncation point) are powerful when there are differences in many or all loci. The Simes adjustment, however, is powerful when there are differences regarding one or a few loci only. As a compromise between the different approaches we introduce a combination between the Simes adjustment and the TPM, i.e. the joint null hypothesis is rejected if at least one of the two methods, Simes and TPM, is significant at the α/2‐level. Simulation results indicate that this combination is a robust procedure with high power over the different types of alternatives.     

Characterization of major histocompatibility complex class I and class II genes from the Tasmanian devil (<Emphasis Type="Italic">Sarcophilus harrisii</Emphasis>)

The Tasmanian devil (Sarcophilus harrisii) is currently threatened by an emerging wildlife disease, devil facial tumour disease. The disease is decreasing devil numbers dramatically and may lead to the extinction of the species. At present, nothing is known about the immune genes or basic immunology of the devil. In this study, we report the construction of the first genetic library for the Tasmanian devil, a spleen cDNA library, and the isolation of full-length MHC Class I and Class II genes. We describe six unique Class II beta chain sequences from at least three loci, which belong to the marsupial Class II DA gene family. We have isolated 13 unique devil Class I sequences, representing at least seven Class I loci, two of which are most likely non-classical genes. The MHC Class I sequences from the devil have little heterogeneity, indicating recent divergence. The MHC genes described here are most likely involved in antigen presentation and are an important first step for studying MHC diversity and immune response in the devil.     

How predator functional responses and Allee effects in prey affect the paradox of enrichment and population collapses

In Rosenzweig-MacArthur models of predator-prey dynamics, Allee effects in prey usually destabilize interior equilibria and can suppress or enhance limit cycles typical of the paradox of enrichment. We re-evaluate these conclusions through a complete classification of a wide range of Allee effects in prey and predator's functional response shapes. We show that abrupt and deterministic system collapses not preceded by fluctuating predator-prey dynamics occur for sufficiently steep type III functional responses and strong Allee effects (with unstable lower equilibrium in prey dynamics). This phenomenon arises as type III functional responses greatly reduce cyclic dynamics and strong Allee effects promote deterministic collapses. These collapses occur with decreasing predator mortality and/or increasing susceptibility of the prey to fall below the threshold Allee density (e.g. due to increased carrying capacity or the Allee threshold itself). On the other hand, weak Allee effects (without unstable equilibrium in prey dynamics) enlarge the range of carrying capacities for which the cycles occur if predators exhibit decelerating functional responses. We discuss the results in the light of conservation strategies, eradication of alien species, and successful introduction of biocontrol agents.