Short-term rather than long-term exclusion of grazing increases soil bacterial diversity in an Inner Mongolian steppe

In the Three Gorges Reservoir Region of China, periodic flooding has led to plant destruction, causing much ecological damage. Re-vegetation with submergence-tolerant species is a possible solution to this problem. At present, many submergence-tolerant species have been selected for such restoration efforts, but it is unclear why these species can survive complete submergence while other species cannot. In this study, we investigated the response of two species – submergence-tolerant Salix variegata Franch. and submergence-intolerant Cinnamomum camphora (L.) Presl. – to flooding. Plants were submerged to 2 m for 3, 9, 15, and 30 days, after which malondialdehyde (MDA) (a membrane injury product) and superoxide anion content, as well as superoxide dismutase (SOD) and peroxidase (POD) activity, was measured. We found that (1) MDA levels increased in submerged C. camphora seedlings but remained constant in S. variegata; (2) superoxide anion content and SOD activity in the two species responded similarly to submergence; and (3) POD activity in S. variegata seedlings was much higher than in C. camphora. These results demonstrate that plant tolerance to submergence is related to membrane stability, and that POD activity is an important factor in this tolerance.     

Connectance of species interaction networks and conservation value: Is it any good to be well connected?

Recently, the focus of conservation efforts gradually changed from a species-centred approach to a broader ambition of conserving functional ecosystems. This new approach relies on the understanding that much ecosystem function is a result of the interaction of species to form complex interaction networks. Therefore measures summarising holistic attributes of such ecological networks have the potential to provide useful indicators to guide and assess conservation objectives. The most generally accepted insight is that complexity in species interactions, measured by network connectance, is an important attribute of healthy communities which usually protects them from secondary extinctions. An implicit and overlooked corollary to this generalization is that conservation efforts should be directed to conserve highly connected communities. We conducted a literature review to search for empirical evidence of a relationship between connectance (complexity) and conservation value (communities on different stages of degradation). Our results show that the often assumed positive relationship between highly connected and desirable (i.e. with high conservation value) communities does not derive from empirical data and that the topic deserves further discussion. Given the conflicting empirical evidence revealed in this study, it is clear that connectance on its own cannot provide clear information about conservation value. In the face of the ongoing biodiversity crisis, studies of species interaction networks should incorporate the different ‘conservation value’ of nodes (i.e. species) in a network if it is to be of practical use in guiding and evaluating conservation practice.     

Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities

Fungal communities play a key role in ecosystem functioning. However, only little is known about their composition in plant roots and the soil of biomass plantations. The goal of this study was to analyze fungal biodiversity in their belowground habitats and to gain information on the strategies by which ectomycorrhizal (ECM) fungi form colonies. In a 2-year-old plantation, fungal communities in the soil and roots of three different poplar genotypes (Populus × canescens, wildtype and two transgenic lines with suppressed cinnamyl alcohol dehydrogenase activity) were analyzed by 454 pyrosequencing targeting the rDNA internal transcribed spacer 1 (ITS) region. The results were compared with the dynamics of the root-associated ECM community studied by morphotyping/Sanger sequencing in two subsequent years. Fungal species and family richness in the soil were surprisingly high in this simple plantation ecosystem, with 5944 operational taxonomic units (OTUs) and 186 described fungal families. These findings indicate the importance that fungal species are already available for colonization of plant roots (2399 OTUs and 115 families). The transgenic modification of poplar plants had no influence on fungal root or soil communities. Fungal families and OTUs were more evenly distributed in the soil than in roots, probably as a result of soil plowing before the establishment of the plantation. Saprophytic, pathogenic, and endophytic fungi were the dominating groups in soil, whereas ECMs were dominant in roots (87%). Arbuscular mycorrhizal diversity was higher in soil than in roots. Species richness of the root-associated ECM community, which was low compared with ECM fungi detected by 454 analyses, increased after 1 year. This increase was mainly caused by ECM fungal species already traced in the preceding year in roots. This result supports the priority concept that ECMs present on roots have a competitive advantage over soil-localized ECM fungi.     

Understanding of the impact of chemicals on amphibians: a meta-analytic review

Many studies have assessed the impact of different pollutants on amphibians across a variety of experimental venues (laboratory, mesocosm, and enclosure conditions). Past reviews, using vote-counting methods, have described pollution as one of the major threats faced by amphibians. However, vote-counting methods lack strong statistical power, do not permit one to determine the magnitudes of effects, and do not compare responses among predefined groups. To address these challenges, we conducted a meta-analysis of experimental studies that measured the effects of different chemical pollutants (nitrogenous and phosphorous compounds, pesticides, road deicers, heavy metals, and other wastewater contaminants) at environmentally relevant concentrations on amphibian survival, mass, time to hatching, time to metamorphosis, and frequency of abnormalities. The overall effect size of pollutant exposure was a medium decrease in amphibian survival and mass and a large increase in abnormality frequency. This translates to a 14.3% decrease in survival, a 7.5% decrease in mass, and a 535% increase in abnormality frequency across all studies. In contrast, we found no overall effect of pollutants on time to hatching and time to metamorphosis. We also found that effect sizes differed among experimental venues and among types of pollutants, but we only detected weak differences among amphibian families. These results suggest that variation in sensitivity to contaminants is generally independent of phylogeny. Some publication bias (i.e., selective reporting) was detected, but only for mass and the interaction effect size among stressors. We conclude that the overall impact of pollution on amphibians is moderately to largely negative. This implies that pollutants at environmentally relevant concentrations pose an important threat to amphibians and may play a role in their present global decline.     

Dynamic macroecology and the future for biodiversity

Reliable projections of climate‐change impacts on biodiversity are vital in formulating conservation and management strategies that best retain biodiversity into the future. While recent modelling has focussed largely on individual species, macroecology has the potential to add significant value to these efforts, by incorporating important community‐level constraints and processes. Here we show how a new dynamic macroecological approach can project climate‐change impacts collectively across all species in a diverse taxonomic group, overcoming shortfalls in our knowledge of biodiversity, while incorporating the key processes of dispersal and community assembly. Our approach applies a recently published technique (DynamicFOAM) to predict the present composition of every community, which form the initial conditions for a new metacommunity model (M‐SET) that projects changes in composition over time, under specified climate and habitat scenarios. Applying this approach at fine resolution to plant biodiversity in Tasmania (2,051 species; 1,157,587 communities), we project high average turnover in community composition from 2010 to 2100 (mean Sorensen's dissimilarity = 0.71 (±7.0 × 10^?5)), with major reductions in species richness (32.9 (±0.02) species lost per community) and no plant species benefitting from climate change in the long term. We also demonstrate how our modelling approach can identify habitat likely to be of high value for retaining rare and poorly reserved species under climate change. Our analyses highlight the potential value of this dynamic macroecological approach, that incorporates key ecological processes in projecting climate change impacts for all species simultaneously and uses simple macroecological inputs that can be derived even for highly diverse and poorly studied taxa.     

Preliminary comparison of quantification efficiency between DNA-derived dataset and cell-derived dataset of mixed diatom sample based on rDNA-ITS sequence analysis

Quantification of eukaryotes, such as diatom within a water community is extremely difficult due to the different copy number of the measured gene. ITS sequence was considered to be useful in defining intra-specific or population-level differences for their fast evolving. To assess the possibility of exploring rDNA-ITS region in quantification analysis of environment samples, the fragment of 5.8S + ITS-2 was amplified from extracted DNA and sedimental cell samples derived from the same natural-simulated water community, respectively. Two clone libraries were built from the above DNA-derived (DD) and cell-derived (CD) amplifications. The operational taxonomic units (OTUs) of the libraries were calculated. In most cases, number of OTUs for CD dataset was smaller than DD dataset. For the DD and CD datasets, 112 sequences yielded 6 OTUs-96 and 4 OTUs-97 and were assigned to six and four species, respectively. Intraspecific variations existed in these cultivations. The sequences percentage in datasets did not match with the cell portions in mixed sample, which revealed that 5.8S + ITS-2 copies varied between different diatom species, and it was not suitable for quantitative analysis of diatom community structures in mixed sample. More researches are necessary to seek for proper gene to quantify diatoms in the environmental samples.     

Temporal changes in the fish fauna entering a tidal swamp system in tropical Australia

Synopsis Leanyer Swamp, a tidal swamp in tropical Australia, is a nursery area for a number of fish species of marine origin. Juveniles of 38 species, representing 24 families, were trapped between October 1979 and March 1980 as they entered the swamp on flood spring tides. The composition of the fish fauna varied markedly between the late dry, early wet and late wet seasons. Of the 17 species whose numbers were significantly correlated to environmental parameters, 15 were correlated wholly or in part with season. The season, the sequence of flood spring tides and the height of these tides determined the movement of the fish community as a whole. The seasonal abundance of many fish species was determined more by their breeding patterns and the dispersal abilities of their juveniles than by such environmental parameters as temperature and salinity which, despite their seasonal change, varied over the short-term with the interaction of tides and rainfall.     

Uniting species- and community-oriented approaches to understand arbuscular mycorrhizal fungal diversity

Arbuscular mycorrhizal fungi (AMF) occur in the majority of terrestrial, and some aquatic, habitats worldwide. They are important for the functioning of individual plants and of entire ecosystems. Here, we review trends in research on species- (species recognition, phylogenetic relationships, autecology) and community-level AMF diversity patterns and aim to identify ways of improving the complementarity of these approaches. Research into many aspects of AMF diversity has flourished in parallel with the increasing availability of molecular biology techniques. However, despite their shared goal of understanding AMF biodiversity, species- and community-level perspectives, and the morphological and molecular approaches that underpin them, currently have limited capacity for information exchange. We indicate critical research gaps in AMF species and community characterisation and outline important research directions. We propose steps that could link research using different methods and targeting different aspects of diversity, in order to maximise our understanding of AMF.