A comparative analysis of neural taste processing in animals

Understanding taste processing in the nervous system is a fundamental challenge of modern neuroscience. Recent research on the neural bases of taste coding in invertebrates and vertebrates allows discussion of whether labelled-line or across-fibre pattern encoding applies to taste perception. While the former posits that each gustatory receptor responds to one stimulus or a very limited range of stimuli and sends a direct 'line' to the central nervous system to communicate taste information, the latter postulates that each gustatory receptor responds to a wider range of stimuli so that the entire population of taste-responsive neurons participates in the taste code. Tastes are represented in the brain of the fruitfly and of the rat by spatial patterns of neural activity containing both distinct and overlapping regions, which are in accord with both labelled-line and across-fibre pattern processing of taste, respectively. In both animal models, taste representations seem to relate to the hedonic value of the tastant (e.g. palatable versus non-palatable). Thus, although the labelled-line hypothesis can account for peripheral taste processing, central processing remains either unknown or differs from a pure labelled-line coding. The essential task for a neuroscience of taste is, therefore, to determine the connectivity of taste-processing circuits in central nervous systems. Such connectivity may determine coding strategies that differ significantly from both the labelled-line and the across-fibre pattern models.     

Sharks that pass in the night: using Geographical Information Systems to investigate competition in the Cretaceous Western Interior Seaway

One way the effects of both ecology and environment on species can be observed in the fossil record is as changes in geographical distribution and range size. The prevalence of competitive interactions and species replacements in the fossil record has long been investigated and many evolutionary perspectives, including those of Darwin, have emphasized the importance of competitive interactions that ultimately lead one species to replace another. However, evidence for such phenomena in the fossil record is not always manifest. Here we use new quantitative analytical techniques based on Geographical Information Systems and PaleoGIS tectonic reconstructions to consider this issue in greater detail. The abundant, well-preserved fossil marine vertebrates of the Late Cretaceous Western Interior Seaway of North America provide the component data for this study. Statistical analysis of distributional and range size changes in taxa confirms earlier ideas that the relative frequency of competitive replacement in the fossil record is limited to non-existent. It appears that typically, environmental gradients played the primary role in determining species distributions, with competitive interactions playing a more minor role.     

Predicting rarity and decline in animals,plants, and mushrooms based on species attributes and indicator groups

In decisions on nature conservation measures, we depend largely on knowledge of the relationship between threats and environmental factors for a very limited number of species groups, with relevant environmental factors often being deduced from the relationship between threat and species traits. But can relationships between traits and levels of threats be identified across species from completely different taxonomic groups; and how accurately do well-known taxonomic groups indicate levels of threat in other species groups? To answer these questions, we first made a list of 152 species attributes of morphological and demographic traits and habitat requirements. Based on these attributes we then grew random forests of decision trees for 1183 species in the 18 different taxonomic groups for which we had Red Lists available in the Netherlands, using these to classify animals, plants, and mushrooms according to their rarity and decline. Finally, we grew random forests for four species groups often used as indicator groups to study how well the relationship between attribute and decline within these groups reflected that relationship within the larger taxonomic group to which these groups belong. Correct classification of rarity based on all attributes was as high as 88% in animals, 85% in plants, and 94% in mushrooms and correct classification of decline was 78% in animals, 69% in plants, and 70% in mushrooms. Vertebrates indicated decline in all animals well, as did birds for all vertebrates and vascular plants for all plants. However, butterflies poorly indicated decline in all insects. Random forests are a useful tool to relate rarity and decline to species attributes thereby making it possible to generalize rarity and decline to a wider set of species groups. Random forests can be used to estimate the level of threat to complete faunas and floras of countries or regions. In regions like the Netherlands, conservation policy based on attributes known to be relevant for the decline to birds, vertebrates or plants will probably also impact all aboveground terrestrial and freshwater macrofauna or macrophytes.     

Genomic islands in Photorhabdus

Genomic islands are responsible for unique aspects of bacterial behavior such as symbiosis and pathogenicity. Photorhabdus luminescens is a pathogen of insects that spends part of its lifecycle in symbiosis with a nematode. Here, we describe novel genomic islands from Photorhabdus that are involved in symbiosis and pathogenicity, and discuss the inter-relationship between virulence factors used against invertebrates and vertebrates.     

Does inbreeding distort sex-ratios?

Inbreeding is reputed to distort sex-ratios by reducing the proportion of the homogametic sex. However, many data sets do not show such an effect, and there is a known selective publication bias. To resolve the issue, we (a) developed detailed theoretical expectations for the effects of inbreeding on sex-ratios for autosomal and sex-linked loci with sex-limited effects or with equal effects in the two sexes, (b) evaluated the effects of inbreeding on sex-ratios in a new sample of 25 vertebrate taxa, and (c) evaluated the effects of inbreeding on sex-ratios for 69 replicate populations of Drosophila melanogaster. Theoretical analyses indicated that directional distortions of sex-ratios under inbreeding due to sex-linked loci with sex-limited expression are expected to be small and uncommon and that there will be no distortions in marsupials. Further, sex linked alleles expressed equally in both sexes may also distort sex-ratios following inbreeding. Autosomal sex-limited alleles should not result in directional sex-ratio distortions in large populations or across many replicates, but may lead to distortions of random direction in some small populations. There were no significant directional distortions of sex-ratio due to inbreeding in either the vertebrates or the Drosophila populations. However, there were significant random distortions of sex-ratios in both data sets, presumably from autosomal sex-limited alleles that had drifted in individual populations. Thus, directional distortions in sex-ratio are not a consistent signal of inbreeding depression.     

On the vagal cardiac nerves,with special reference to the early evolution of the head–trunk interface

The vagus nerve, or the tenth cranial nerve, innervates the heart in addition to other visceral organs, including the posterior visceral arches. In amniotes, the anterior and posterior cardiac branches arise from the branchial and intestinal portions of the vagus nerve to innervate the arterial and venous poles of the heart, respectively. The evolution of this innervation pattern has yet to be elucidated, due mainly to the lack of morphological data on the vagus in basal vertebrates. To investigate this topic, we observed the vagus nerves of the lamprey (Lethenteron japonicum), elephant shark (Callorhinchus milii), and mouse (Mus musculus), focusing on the embryonic patterns of the vagal branches in the venous pole. In the lamprey, no vagus branch was found in the venous pole throughout development, whereas the arterial pole was innervated by a branch from the branchial portion. In contrast, the vagus innervated the arterial and venous poles in the mouse and elephant shark. Based on the morphological patterns of these branches, the venous vagal branches of the mouse and elephant shark appear to belong to the intestinal part of the vagus, implying that the cardiac nerve pattern is conserved among crown gnathostomes. Furthermore, we found a topographical shift of the structures adjacent to the venous pole (i.e., the hypoglossal nerve and pronephros) between the extant gnathostomes and lamprey. Phylogenetically, the lamprey morphology is likely to be the ancestral condition for vertebrates, suggesting that the evolution of the venous branch occurred early in the gnathostome lineage, in parallel with the remodeling of the head–trunk interfacial domain during the acquisition of the neck. J. Morphol. 277:1146–1158, 2016. © 2016 Wiley Periodicals, Inc.     

Global associations between terrestrial producer and vertebrate consumer diversity

In both ecology and conservation, often a strong positive association is assumed between the diversity of plants as primary producers and that of animals, specifically primary consumers. Such a relationship has been observed at small spatial scales, and a begetting of diversity by diversity is expected under various scenarios of co-evolution and co-adaptation. But positive producer-consumer richness relationships may also arise from similar associations with past opportunities for diversification or contemporary environmental conditions, or from emerging properties of plant diversity such as vegetation complexity or productivity. Here we assess whether the producer-consumer richness relationship generalizes from plot to regional scale and provide a first global test of its strength for vascular plants and endothermic vertebrates. We find strong positive richness associations, but only limited congruence of the most diverse regions. The richness of both primary and higher-level consumers increases with plant richness at similar strength and rate. Environmental conditions emerge as much stronger predictors of consumer richness, and after accounting for environmental differences little variation is explained by plant diversity. We conclude that biotic interactions and strong local associations between plants and consumers only relatively weakly scale up to broad geographical scales and to functionally diverse taxa, for which environmental constraints on richness dominate.     

Unilateral and wandering furrows during mitosis in vertebrates: implications for the mechanism of cytokinesis

Vertebrate somatic cells sometimes form unilateral furrows during cytokinesis that ingress from only one edge of the cell. In some cases after a cell initiates a normal symmetrical circumferential furrow, one of its edges stops furrowing and regresses while the furrow associated with the opposing edge continues across the cell. In cells containing two independent spindles unilateral furrows are sometimes formed that do not follow a linear path but instead sharply change their direction and wander for >40 microm through the cell. These observations reveal that the 'contractile ring' normally seen during cytokinesis is composed of multiple independent 'furrowing units' that are normally coordinated to form a symmetrical furrow around the cell, and that once formed this so-called contractile band does not function as a 'purse string' as commonly envisioned. Individual furrowing units can work independently of one another, and cytokinesis in vertebrates can be consummated by the formation of a single functional furrowing unit in a localized region of the cell cortex that is then propagated across the cell. How this propagation occurs remains an important question for the future.     

The ‘Tully Monster’ is not a vertebrate: characters,convergence and taphonomy in Palaeozoic problematic animals

The affinity of Tullimonstrum gregarium, a pincer‐mouthed, soft bodied bilaterian, has been subject to debate since its recovery from Carboniferous coal deposits at Mazon Creek, Illinois. After decades of impasse focused on mollusc, arthropod and annelid attributes, two recent, yet conflicting, high‐profile studies concluded that the ‘Tully Monster’ is a vertebrate, a relative of lampreys or jawed fishes. Here, we find that structures described as supporting vertebrate, and particularly crown vertebrate, affinity face significant challenges from biological, functional and taphonomic perspectives. Problems with comparator choice, interpretation of taphonomic processes at Mazon Creek and estimation of convergence within the bilaterian tree may have misled these recent studies, leading to conclusions which do not accommodate current understanding of the vertebrate record. For example, the absence of taphonomically‐expected synapomorphies in Tullimonstrum (e.g. otic capsules, body pigment) calls into question vertebrate identity and implies that convergence or deeper origins are responsible for vertebrate‐like traits. Further, phylogenetic placement within vertebrates is only made possible by the constraints of a chordate‐only dataset with limited outgroups and use of selective characters. Long‐discussed alternative placements among molluscs (e.g. heteropod gastropods), arthropods (e.g. anomalocarids) or elsewhere within non‐vertebrate deuterostomes are more congruent. Indeed, many of these lineages independently evolved vertebrate‐like traits, including complex eyes and ‘teeth’. Thus, given the totality of evidence, Tullimonstrum should be excluded from the vertebrate crown. Potential assignments for aberrant bilaterians, common throughout the Palaeozoic fossil record, need to be considered in light of the number and likelihood of required exceptions to established schemes.