Predicting reptile distributions at the mesoscale: relation to climate and topography

Aim To explore the respective power of climate and topography to predict the distribution of reptiles in Switzerland, hence at a mesoscale level. A more detailed knowledge of these relationships, in combination with maps of the potential distribution derived from the models, is a valuable contribution to the design of conservation strategies. Location All of Switzerland. Methods Generalized linear models are used to derive predictive habitat distribution models from eco‐geographical predictors in a geographical information system, using species data from a field survey conducted between 1980 and 1999. Results The maximum amount of deviance explained by climatic models is 65%, and 50% by topographical models. Low values were obtained with both sets of predictors for three species that are widely distributed in all parts of the country (Anguis fragilis, Coronella austriaca, and Natrix natrix), a result that suggests that including other important predictors, such as resources, should improve the models in further studies. With respect to topographical predictors, low values were also obtained for two species where we anticipated a strong response to aspect and slope, Podarcis muralis and Vipera aspis. Main conclusions Overall, both models and maps derived from climatic predictors more closely match the actual reptile distributions than those based on topography. These results suggest that the distributional limits of reptile species with a restricted range in Switzerland are largely set by climatic, predominantly temperature‐related, factors.     

Does daily climate variation have an effect on species’ elevational range size?

In their recent paper published in Science (2016, 351 , 1437–1439), Chan et al. analysed 137 montane gradients, concluding that they found a novel pattern—a negative relationship between mean elevational range size of species and daily temperature variation, which was claimed as empirical evidence for a novel macrophysiological principle (Gilchrist's hypothesis). This intriguing possibility was their key conceptual contribution. Unfortunately, as we show, the empirical evidence was flawed because of errors in the analyses and substantial sampling bias in the data. First, we re‐ran their analyses using their data, finding that their model should have been rejected. Second, we performed two additional re‐analyses of their data, addressing biases and pseudoreplication in different ways, both times again rejecting the evidence claimed to support Gilchrist's hypothesis. These results overturn the key empirical findings of Chan et al.'s study. Therefore, the “macrophysiological principle” should be regarded as currently remaining unsupported by empirical evidence.     

The Fossil Record of Vertebrate Tracks in Mexico

The fossil record of vertebrate tracks in Mexico is taxonomically rich and geographically diverse, and ranges in age from Middle Jurassic to Pleistocene and possibly Holocene. Middle Jurassic saurischian dinosaur tracks from Oaxaca represent the oldest record of vertebrate tracks in Mexico. Tracks attributed to Late Jurassic theropods and ornithopods are known from Michoacán. Theropod tracks of supposed Jurassic age are known from Durango. Lower Cretaceous Saurischian and ornithopod tracks are known from southern Puebla. Central Mexico has yielded Late Cretaceous hadrosaurid and sauropod tracks (Puebla), and tracks belonging to Theropoda and Ornithopoda (El Aguaje, Michoacan). In Coahuila several tracksites occur within the Cerro del Pueblo Formation and include tracks of mesoreptiles, pterosaurs, small to large theropods, bipedal and quadrupedal ornithopods, birds and possibly a mammal. A tracksite in the Olmos Formation includes tracks of turtles, crocodilians, medium-sized theropods, small ornithopods, and birds. Bird tracks of supposed Eocene age are known from Sinaloa. Two important Pleistocene ichnofaunas occur in the states of Puebla (Tepexi de Rodríguez) and Jalisco (San Juan de los Lagos), and include tracks of camelids, artiodactyls, small ungulates, elephants, large felids and birds. Pleistocene human tracks occur in Coahuila and Jalisco. Mexico's track record provides important insights into vertebrate diversity, paleoecology, and paleoenvironments. Given the rate of new discoveries since 1998, there is no doubt that new sites await to be found.     

Pseudooneotodusi a histological study of an Ordovician to Devonian vertebrate lineage

Detailed histological investigations have shed new light on the nature of Pseudooneotodus Drygant, 1974 (?Arenig/ljanvirn - Emsian). The genus has generally been interpreted as a conodont and is represented by squat phosphatic cones. These conodont dements show a differentiation into a lamellar cap, indistinguishable from vertebrate enamel, which is underlain by a spherulitic basal tissue with several characters indicative of dentine. The presence of these two issues in the elements of a conodont argues persuasively for the. vertebrate classification of the cladc, and illustrates that at least some conodonts have a hard tissue complex which is histologically indistinguishable from those of other primitive vertebrates. These observations have potentially important implications for conodont classification and the stratigraphic first appearances of vertebrate hard tissues.     

Global bioregions of reptiles confirm the consistency of bioregionalization processes across vertebrate clades

Aim

The identification of biogeographical zones has been fundamental in broadscale biodiversity analyses over the last 150 years. If processes underlying bioregionalization, such as climatic differences, tectonics and physical barriers, are consistent across vertebrate clades, we expect that groups with more similar ecological characteristics would show more similar bioregions. Lack of data has so far hampered the delineation of global bioregions for reptiles. Therefore, we integrated comprehensive geographic distribution and phylogenetic data of lepidosaurian reptiles to delineate global reptile bioregions, compare determinants of biogeographical boundaries across terrestrial vertebrates and test whether clades showing similar responses to environmental factors also show more similar bioregions.

Location

Global.

Time Period

Present.

Major Taxa Studied

Reptiles, amphibians, birds, mammals.

Methods

For reptiles, we used phylogenetic beta diversity to quantify changes in community composition, and hierarchical clustering to identify biogeographic ‘realms’ and ‘regions’. Then, we assessed the determinants of biogeographical boundaries using spatially explicit regression models, testing the effect of climatic factors, physical barriers and tectonics. Bioregions of reptiles were compared to those of other vertebrate clades by testing the overall similarity of the spatial structure of bioregions, and the match of the position of biogeographical boundaries.

Results

For reptiles, we identified 24 evolutionarily unique regions, nested within 14 realms. Biogeographical boundaries of reptiles were related to both climatic factors and past tectonic movements. Bioregions were very consistent across vertebrate clades. Bioregions of reptiles and mammals showed the highest similarity, followed by reptiles/birds and mammals/birds while amphibian bioregions were less similar to those of the other clades.

Main Conclusions

The overall high similarity among bioregions suggests that bioregionalization was affected by similar underlying processes across terrestrial vertebrates. Nevertheless, clades with different eco-physiological characteristics respond somewhat differently to the same environmental factors, resulting in similar but not identical regionalizations across vertebrate clades.     

The empty forest three decades later: Lessons and prospects

The “Empty Forest” paradigm published three decades ago inspired studies on biodiversity erosion. Evidence to date continues pessimistic regarding the fate of wildlife. This calls for a more proactive approach by several societal actors to realign systems of resource exploitation with the goals of the Convention on Biological Diversity.     

DIFFERENTIAL AVOIDANCE OF CORAL SNAKE BANDED PATTERNS BY FREE-RANGING AVIAN PREDATORS IN COSTA RICA

Empirical studies of mimicry have rarely been conducted under natural conditions. Field investigations of some lepidopteran systems have provided a bridge between experiments examining artificial situations and the mimicry process in nature, but these systems do not include all types of mimicry. The presence of dangerous or deadly models is thought to alter the usual rules for mimicry complexes. In particular, a deadly model is expected to protect a wide variety of mimics. Avoidance of different types of mimics should vary according to how closely they resemble the model. Coral snake mimicry complexes in the neotropics may provide natural systems in which these ideas can be examined, but there is no direct evidence that the patterns of venomous coral snakes or potential mimics are avoided in the wild. Plasticine replicas of snakes were used to assess the frequency of avian predation attempts as a function of color pattern. Avian predators left identifiable marks on the replicas, the position of which indicated that replicas were perceived as potentially dangerous prey items by birds. The number of attacks on unmarked brown replicas was greater than that on tricolor coral snake banded replicas. This result was true whether replicas were placed on natural or plain white backgrounds, suggesting that coral snake banded patterns function aposematically. In a separate experiment, replicas representing all six patterns of proposed coral mimics at the study site were attacked less often than unmarked brown replicas. Within these six banded patterns, some were attacked significantly more often than others. This study provides direct field evidence that coral snake banded patterns are avoided by free-ranging avian predators and supports theoretical predictions about mimicry systems involving deadly models.     

Special dendritic and axonal endings formed by the cerebrospinal fluid contacting neurons of the spinal cord

Summary The cerebrospinal fluid (CSF) contacting neurons have a dendritic process which protrudes into the central canal, and is provided with one long kinocilium and many shorter stereocilia (about 80 in the turtle) as revealed by scanning electron microscopy. The shape, number and arrangement of the cilia are similar to those of known receptor endings.The silver impregnated axons of these cells converge to a paired centrosuperficial tract forming terminal enlargements at the ventrolateral surface of the spinal cord. Lying among glial endfeet these terminals are ultrastructurally similar to those present in known neurosecretory areas. The nerve endings are attached to the basal lamina, and they comprise many synaptic vesicles (200 to 400 Å in diameter), as well as granular vesicles of different sizes (diameter 600 to 1800 Å). The axons may lie within finger-like protrusions on the surface of the spinal cord, or they may terminate around vessels.Morphological evidence suggests that these nerve terminals and the corresponding CSF contacting perikarya represent a spinal neurosecretory system possibly influenced by information taken up by its special dendrites protruding into the inner CSF space.     

Statistical and molecular analyses of evolutionary significance of red-green color vision and color blindness in vertebrates

Red-green color vision is strongly suspected to enhance the survival of its possessors. Despite being red-green color blind, however, many species have successfully competed in nature, which brings into question the evolutionary advantage of achieving red-green color vision. Here, we propose a new method of identifying positive selection at individual amino acid sites with the premise that if positive Darwinian selection has driven the evolution of the protein under consideration, then it should be found mostly at the branches in the phylogenetic tree where its function had changed. The statistical and molecular methods have been applied to 29 visual pigments with the wavelengths of maximal absorption at approximately 510-540 nm (green- or middle wavelength-sensitive [MWS] pigments) and at approximately 560 nm (red- or long wavelength-sensitive [LWS] pigments), which are sampled from a diverse range of vertebrate species. The results show that the MWS pigments are positively selected through amino acid replacements S180A, Y277F, and T285A and that the LWS pigments have been subjected to strong evolutionary conservation. The fact that these positively selected M/LWS pigments are found not only in animals with red-green color vision but also in those with red-green color blindness strongly suggests that both red-green color vision and color blindness have undergone adaptive evolution independently in different species.     

The Controversial Denouement of Vertebrate DNA Methylation Research

The study of the biological role of DNA methylation in vertebrates has involved considerable controversy. Research in this area has proceeded well despite the complexity of the subject and the difficulties in establishing biological roles, some of which are summarized in this review. Now there is justifiably much more interest in DNA methylation than previously, and many more laboratories are engaged in this research. The results of numerous studies indicate that some tissue-specific differences in vertebrate DNA methylation help maintain patterns of gene expression or are involved in fine-tuning or establishing expression patterns. Therefore, vertebrate DNA methylation cannot just be assigned a role in silencing transposable elements and foreign DNA sequences, as has been suggested. DNA methylation is clearly implicated in modulating X chromosome inactivation and in establishing genetic imprinting. Also, hypermethylation of CpG-rich promoters of tumor suppressor genes in cancer has a critical role in downregulating expression of these genes and thus participating in carcinogenesis. The complex nature of DNA methylation patterns extends to carcinogenesis because global DNA hypomethylation is found in the same cancers displaying hypermethylation elsewhere in the genome. A wide variety of cancers display both DNA hypomethylation and hypermethylation, and either of these types of changes can be significantly associated with tumor progression. These findings and the independence of cancer-linked DNA hypomethylation from cancer-linked hypermethylation strongly implicate DNA hypomethylation, as well as hypermethylation, in promoting carcinogenesis. Furthermore, various DNA demethylation methodologies have been shown to increase the formation of certain types of cancers in animals, and paradoxically, DNA hypermethylation can cause carcinogenesis in other model systems. Therefore, there is a need for caution in the current use of demethylating agents as anti-cancer drugs. Nonetheless, DNA demethylation therapy clearly may be very useful in cases where better alternatives do not exist.