Characterizing the role benthos plays in large coastal seas and estuaries: A modular approach

Ecologists studying coastal and estuarine benthic communities have long taken a macroecological view, by relating benthic community patterns to environmental factors across several spatial scales. Although many general ecological patterns have been established, often a significant amount of the spatial and temporal variation in soft-sediment communities within and among systems remains unexplained. Here we propose a framework that may aid in unraveling the complex influence of environmental factors associated with the different components of coastal systems (i.e. the terrestrial and benthic landscapes, and the hydrological seascape) on benthic communities, and use this information to assess the role played by benthos in coastal ecosystems. A primary component of the approach is the recognition of system modules (e.g. marshes, dendritic systems, tidal rivers, enclosed basins, open bays, lagoons). The modules may differentially interact with key forcing functions (e.g. temperature, salinity, currents) that influence system processes and in turn benthic responses and functions. Modules may also constrain benthic characteristics and related processes within certain ecological boundaries and help explain their overall spatio-temporal variation. We present an example of how benthic community characteristics are related to the modular structure of 14 coastal seas and estuaries, and show that benthic functional group composition is significantly related to the modular structure of these systems. We also propose a framework for exploring the role of benthic communities in coastal systems using this modular approach and offer predictions of how benthic communities may vary depending on the modular composition and characteristics of a coastal system.     

Representation of Andean Dry Ecoregions in the Protected Areas of Bolivia: The Situation in Relation to the New Phytogeographical Findings

Bolivia is a megadiverse country. A large part of its biodiversity is due to the fact that in its territory different biogeographical regions meet. As a preliminary means to understand how this biodiversity is being protected, three previous studies undertook an evaluation of how well represented the ecological regions were in the National System of Protected Areas (NSPA). However, the most recent biogeographical findings in Bolivia call for a new analysis of this sort. We try to achieve this, emphasizing the situation in the Andean dry regions, which have been given scarce priority, despite their high biological value. In general, xeric ecoregions are under-represented while humid ones are over-represented. The Prepuna and the central altiplano (which includes the Dry Puna sub-ecoregion) are not represented within the NSPA, nor is the Beni Cerrado sub-ecoregion. The Inter-Andean Dry Valleys cover only ca. 0.5% of the protected area, in spite of their diverse flora and status as one of Bolivia’s most important centers or endemism. Although the diverse Chiquitos Dry Forest is well represented, it is protected mostly as an ‘Integrated Management Natural Area’, and thus lacks full protection. The Semi-Humid Puna and the Flooded Savannas of the Moxos Plains, important subdivisions of two main ecoregions, are markedly under-represented in the NSPA, despite the importance of Moxos plains as a center of endemism for birds. Other ecoregions have a representation in the NSPA which can be considered adequate or even excessive. The over-representation of the humid Yungas mountain forests seems to be justified as this is probably Bolivia’s most important center of diversity and endemism. There is a need for a more proper distribution of some protected areas which consider true limits, size, diversity, endemism and other attributes of the different ecoregions in a more rigorous manner.     

Structural Reorganization of α-Synuclein at Low pH Observed by NMR and REMD Simulations

α-Synuclein is an intrinsically disordered protein that appears in aggregated forms in the brains of patients with Parkinson's disease. The conversion from monomer to aggregate is complex, and aggregation rates are sensitive to changes in amino acid sequence and environmental conditions. It has previously been observed that α-synuclein aggregates faster at low pH than at neutral pH. Here, we combine NMR spectroscopy and molecular simulations to characterize α-synuclein conformational ensembles at both neutral and low pH in order to understand how the altered charge distribution at low pH changes the structural properties of these ensembles and leads to an increase in aggregation rate. The N-terminus, which has a small positive charge at neutral pH due to a balance of positively and negatively charged amino acid residues, is very positively charged at low pH. Conversely, the acidic C-terminus is highly negatively charged at neutral pH and becomes essentially neutral and hydrophobic at low pH. Our NMR experiments and replica exchange molecular dynamics simulations indicate that there is a significant structural reorganization within the low-pH ensemble relative to that at neutral pH in terms of long-range contacts, hydrodynamic radius, and the amount of heterogeneity within the conformational ensembles. At neutral pH, there is a very heterogeneous ensemble with transient contacts between the N-terminus and the non-amyloid β component (NAC); however, at low pH, there is a more homogeneous ensemble that exhibits strong contacts between the NAC and the C-terminus. At both pH values, transient contacts between the N- and C-termini are observed, the NAC region shows similar exposure to solvent, and the entire protein shows similar propensities to secondary structure. Based on the comparison of the neutral- and low-pH conformational ensembles, we propose that exposure of the NAC region to solvent and the secondary-structure propensity are not factors that account for differences in propensity to aggregate in this context. Instead, the comparison of the neutral- and low-pH ensembles suggests that the change in long-range interactions between the low- and neutral-pH ensembles, the compaction of the C-terminal region at low pH, and the uneven distribution of charges across the sequence are key to faster aggregation.     

Concentration of Nucleosides and Related Compounds in Cerebral and Cerebellar Cortical Areas and White Matter of the Human Brain

1. Nucleosides potentially participate in the neuronal functions of the brain. However, their distribution and changes in their concentrations in the human brain is not known. For better understanding of nucleoside functions, changes of nucleoside concentrations by age and a complete map of nucleoside levels in the human brain are actual requirements.2. We used post mortem human brain samples in the experiments and applied a recently modified HPLC method for the measurement of nucleosides. To estimate concentrations and patterns of nucleosides in alive human brain we used a recently developed reverse extrapolation method and multivariate statistical analyses.3. We analyzed four nucleosides and three nucleobases in human cerebellar, cerebral cortices and in white matter in young and old adults. Average concentrations of the 308 samples investigated (mean±SEM) were the following (pmol/mg wet tissue weight): adenosine 10.3±0.6, inosine 69.5±1.7, guanosine 13.5±0.4, uridine 52.4±1.2, uracil 8.4±0.3, hypoxanthine 108.6±2.0 and xanthine 54.8±1.3. We also demonstrated that concentrations of inosine and adenosine in the cerebral cortex and guanosine in the cerebral white matter are age-dependent.4. Using multivariate statistical analyses and degradation coefficients, we present an uneven regional distribution of nucleosides in the human brain. The methods presented here allow to creation of a nucleoside map of the human brain by measuring the concentration of nucleosides in microdissected tissue samples. Our data support a functional role for nucleosides in the brain.     

Avifaunal gradients in two arid zones of central Iran in relation to vegetation, climate, and topography

Aim To identify the ecological factors (related to vegetation, altitude, climate, or geomorphology) that could explain the main gradients of avifaunal richness and composition in arid environments of Central Iran. Location The study was carried out in two nearby semi‐arid protected areas of the Ispahan province: the Kolah‐Ghazi National Park (c. 50,000 ha; 1540–2535 m a.s.l.) and the Mouteh Wildlife Refuge (c. 220,000 ha; 1493–2900 m a.s.l.). Annual average precipitation and temperature range from 155–205 mm and 15–19.5 °C, respectively. Vegetation cover is sparse. Methods The two study areas were sampled with a 1 × 1 km grid design. A subset of 405 squares was randomly chosen and each was visited once during spring or summer by a team of five observers walking from one side of a square to the other and back, recording the birds encountered. Raptors and species considered to be accidental or migrating were not taken into account. We first looked for avifaunal, vegetation, and geomorphological gradients using Correspondence Analysis. As we found spatial autocorrelation within our response variables (avifaunal richness, abundance and/or composition), we first calculated an autocorrelation term, then added this autocorrelation term in anova , ancova (separate slope design) and stepwise regression to assess the relative role of spatial autocorrelation and environmental explanatory variables (vegetation, altitude, climate, or topography). We also partitioned the variance of the avifaunal matrix between several sets of co‐variables, after controlling for spatial effects, using a series of partial Canonical Correspondence Analyses. Results A main gradient, common to the two areas, distinguishes bird species characteristic of flat sedimentary areas and species dwelling in mountainous and/or rocky areas. Despite the generally low values of the correlations measured, we found that richness, abundance and composition of the avifauna were better correlated with topography, especially the altitudinal amplitude within each square, than any other variable, including vegetation. Altitudinal amplitude is related to substrate complexity. Main conclusions In arid zones of central Iran, topographic features seem to be the main factors structuring avifaunal composition and abundance. Avifaunal composition and richness are mainly correlated with the complexity of the substrate, but both avifaunal richness and abundance increase with altitude, probably in response to decreasing aridity. We did not observe any bird altitudinal zonation in a strict sense. These results contrast with those generally observed in mid‐latitude regions of the Palaearctic.     

Mountain coniferous forests, refugia and butterflies

The boreal coniferous forests form the most extended vegetation zone of the Northern Hemisphere. As opposed to North America, they are disconnected from the mountain coniferous forests in Europe, because of the dominant east-west direction of the mountain chains. Consequently, the mountain forests show some unique characteristic features of glacial survival and postglacial history, as well. The mountain coniferous forests have numerous common floral and faunal elements with the boreal zone. However, the few unique faunal elements of the European mountain coniferous forests can be used to unravel the peculiar patterns and processes of this biome. In this issue of Molecular Ecology, Thomas Schmitt and Karola Haubrich (2008) use the relatively common and taxonomically well-studied butterfly, the large ringlet (Erebia euryale) to identify the last glacial refugia and postglacial expansion routes.     

A fine-scale gap analysis of the existing protected area system in Hong Kong, China

As well as being one of the most densely populated areas on Earth, Hong Kong also has the highest percentage of protected areas (38% of the 1098 km² land area) of any administrative region in the Asia Pacific. Overlay of field records from a biodiversity survey of eight taxa (amphibians, reptiles, mammals, breeding birds, ants, butterflies, dragonflies and rare vascular plants) in 1 km grid squares with protected areas indicated that over half of the 623 species of conservation concern (globally, regionally, or locally restricted species) were under-represented. Ants, butterflies and reptiles were most poorly represented. The hotspots of different taxa also received differing levels of protection. Hong Kong's protected areas are biased towards high-altitude habitats, so the under-represented species are mostly associated with the lowland habitats (freshwater wetlands, abandoned agriculture and feng shui woods). Since the restricted species are scattered and the hotspots of different taxa do not overlap, a large protected area network will be required to represent all species. This indicates the challenge that will be encountered in the conservation of many other parts of Asia that support burgeoning human populations, and where landscapes are increasingly human-dominated.     

Corema album: unbiased dioecy in a competitive environment

• Corema album is a dioecious coastal shrub. Dioecious plants growing in these resource‐limited habitats may present spatial segregation of the sexes (SSS) or demographic biases because of the different reproductive effort between sexes. In these environments facilitation is a more common interaction between plants than competition. To assess factors determining the distribution of C. album male and female plants, we investigated the influence of habitat type (sand dunes and coastal woodlands), assessed the occurrence of SSS or demographic biases and also a possible role of these shrubs as nurse plants.
• We selected three C. album populations with the two habitat types. All C. album individuals were sexed, mapped and measured in three plots (20 m × 20 m) per population/habitat type. Presence and abundance of all plant species were recorded under five female and five male C. album plants as well as in equivalent open ground area in each of 15 plots.
• According to Ripley's K function result, C. album did not display SSS. Generalised linear mixed models (GLMM) show that differences in plant size were not related to plant sex. Plant inventory correspondence analysis showed that species composition and abundance were influenced by habitat type, population and the presence of a C. album individual, but not by its sex. GLMM indicated a detrimental effect of C. album on the co‐occurring plants.
• Our results show that sexual dimorphism has allowed C. album to adapt to the environment avoiding SSS or significant demographic bias, suggesting a positive outlook for its conservation.

     

In situ soil net nitrogen mineralization in coastal salt marshes (Suaeda salsa) with different flooding periods in a Chinese estuary

Flooding periods can be one of the most important factors influencing nitrogen (N) biogeochemical processes in wetlands ecosystem. We conducted a field study using in situ incubation method to investigate the seasonal dynamics of soil net N mineralization in three coastal salt marshes (Suaeda salsa) with different flooding periods (i.e., short-term (STF), seasonal (SF), and tidal (TF) flooding wetland) in the Yellow River Delta. Selected soil inorganic N pools (ammonium, nitrate and inorganic N) and N transformation (mineralization, nitrification and ammonification) rates in the top 0–10 cm soils were repeatedly quantified from April to October. Clear seasonal patterns in inorganic N pools and transformation rates were observed in accord with the seasonal variations of temperature and moisture. Generally, higher levels of soil inorganic nitrogen, ammonium nitrogen (NH₄⁺-N) and nitrate nitrogen (NO₃^－-N) occurred in the early-growing season (April), and NH₄⁺-N contents got a small accumulative peak in midsummer (September). The lower rates (negative) of net mineralization (R_min), nitrification (R_nit) and ammonification (R_amm) were observed in the early-growing season (April–June) and fall (September–October), whereas higher values (positive) in midsummer (August–September). Flooding had a significant influence on inorganic N pools (except for NH₄⁺-N) and transformation rates (p < 0.05). R_min values in SF wetland were significantly higher in the August-September period than those in other incubation periods. R_nit values in TF wetland exhibited a small variation and the highest value occured in the June–August period. The results of principal component analysis showed that soil samples were clearly divided into two groups before and after flow-sediment regulation. After flooding events, the R_min and R_amm values generally increased in the three wetlands, whereas a significant decrease in R_nit values was observed in SF wetland (p < 0.05), thus the differences in NO₃^－-N among these wetlands were eliminated. These results suggested that seasonal variations in temperature and moisture are important factors influencing inorganic N pools and transformation rates.     

Broad wintering range and intercontinental migratory divide within a core population of the near‐threatened pallid harrier

Aim To identify the migration routes and wintering grounds of the core populations of the near‐threatened pallid harrier, Circus macrourus, and highlight conservation needs associated with these phases of the annual cycle. Location Breeding area: north‐central Kazakhstan; Wintering areas: Sahel belt (Burkina Faso to Ethiopia) and north‐west India. Methods We used ring recovery data from Kazakhstan and satellite tracking data from 2007 to 2008 on six adults breeding in north‐central Kazakhstan to determine migration routes and locate wintering areas. In addition, one first‐year male was tagged in winter 2007–2008 in India. Results Data evidenced an intercontinental migratory divide within the core pallid harrier population, with birds wintering in either Africa or India. The six individuals tagged in north‐central Kazakhstan followed a similar route (west of the Caspian Sea and Middle East) towards east Africa, before spreading along the Sahel belt to winter either in Sudan, Ethiopia, Niger or Burkina Faso. Spring migration followed a shorter, more direct route, with marked interindividual variation. The bird tagged in India spent the summer in central Kazakhstan. Half of the signal losses (either because of failure or bird mortality) occurred on the wintering areas and during migration. Main conclusions Our study shows that birds from one breeding area may winter over a strikingly broad range within and across continents. The intercontinental migratory divide of pallid harriers suggests the coexistence of distinct migratory strategies within the core breeding population, a characteristic most likely shared by a number of threatened species in central Asia. Conservation strategies for species like the pallid harrier, therefore, require considering very large spatial scales with possibly area‐specific conservation issues. We highlight urgent research priorities to effectively inform the conservation of these species.