Impact of Aging Time on the Dermal Penetration of Phenol in Soil

Phenol is released to soil through accidental spills, manufacturing processes, and waste disposal. With time, chemicals can become more sequestered in soil (aging). Since skin is the body's primary route of entry for phenol, the impact of aging time on the dermal penetration of phenol was assessed in Atsion and Keyport soils. In vitro studies were conducted on dermatomed male pig skin using a flow-through diffusion cell methodology and radiolabeled phenol. After 3 and 6 months of aging in the Atsion soil, dermal penetration decreased from 84% of the initial dose for pure phenol (without soil) to 15% and 8%, respectively, while the dermal penetration of phenol aged in the Keyport soil was reduced to 22% and 17%, respectively. Atsion soil has a higher organic matter content (4.4%) than Keyport soil (1.6%) suggesting that the lower bioavailability of phenol aged in the Atsion soil may be due to the amount of organic matter in that soil. Although the data indicate that the potential health risk from dermal exposure to phenol would be lower after aging in soil than to pure chemical, further experiments are warranted at lower soil loads and with additional concentrations of phenol to quantify the risk.     

Forms and Functions of Meso and Micro-niches of Carbon within Soil Aggregates

Soil aggregates include sand/silt/clay, water, ion and organic matter contents combined with natural dry/wet (D/W) cycling alters both the formation and function of intra-aggregate pore continuity, connectivity, dead-end storage volumes, and tortuosity. Surface aggregates in the 0-5 cm depths of most soils experience from 34 to 57 D/W cycles that exceed differences in water contents >10%. Both the rates of drying or wetting, (intensity) and the D/W range of soil water contents (severity) alter the transport of water, C and N through micro and mesofaunal habitats among multiple size domains. This report identifies micro-niche locations of accumulating soil C within soil aggregate regions that may affect nematode residence sites and migration pathways. Recent advances in X-ray microtomography enable the examination of intact pore networks within soil aggregates at resolutions as small as 4 microns. Geostatistical and multi-fractal methods provide concise characteristics of pore spatial distributions within the aggregates and are useful for comparing these alterations among soils. Aggregates subjected to multiple D/W cycles developed greater spatial correlations that parallel increases in the (13)C sorption within aggregate interiors were compared with locations of soil microbial communities. Past research indicates microbial activities within the soil aggregate matrix are spatially heterogeneous due to complex pore geometries within aggregates. Illumination of the "blackbox" interiors of soil aggregates includes a discussion of natural and anthropogenic alterations of solution flow and carbon sequestration by soil aggregates containing biophysical gradients.     

Proteomic insights into an expanded cellular role for cytoplasmic lipid droplets

Cytoplasmic lipid droplets (CLDs) are cellular structures composed of a neutral lipid core surrounded by a phospholipid monolayer of amphipathic lipids and a variety of proteins. CLDs have classically been regarded as cellular energy storage structures. However, recent proteomic studies reveal that, although many of the proteins found to associate with CLDs are connected to lipid metabolism, storage, and homeostasis, there are also proteins with no obvious connection to the classical function and typically associated with other cellular compartments. Such proteins are termed refugee proteins, and their presence suggests that CLDs may serve an expanded role as a dynamic protein storage site, providing a novel mechanism for the regulation of protein function and transport.     

The Importance of Defining 'Forest': Tropical Forest Degradation, Deforestation, Long-term Phase Shifts, and Further Transitions

While research continues on the causes, consequences, and rates of deforestation and forest degradation in the tropics, there is little agreement about what exactly is being lost, what we want back, and to whom the 'we' refers. Particularly unsettling is that many analyses and well-intended actions are implemented in fogs of ambiguity surrounding definitions of the term 'forest'—a problem that is not solely semantic; with development of markets for biomass carbon, vegetation classification exercises take on new relevance. For example, according to the basic implementation guidelines of the Kyoto Protocol, closed canopy natural forest could be replaced by monoclonal plantations of genetically engineered exotic tree species and no deforestation would have occurred. Following these same guidelines, carbon credits for afforestation could be available for planting trees in species-rich savannas; these new plantations would count towards a country moving towards the 'forest transition,' the point at which there is no net 'forest' loss. Such obvious conflicts between biodiversity conservation and carbon sequestration might be avoided if 'forest' was clearly defined and if other vegetation types and other ecosystem values were explicitly recognized. While acknowledging that no one approach to vegetation classification is likely to satisfy all users at all scales, we present an approach that recognizes the importance of species composition, reflects the utility of land-cover characteristics that are identifiable via remote sensing, and acknowledges that many sorts of forest degradation do not reduce carbon stocks ( e.g ., defaunation) or canopy cover ( e.g ., over-harvesting of understory nontimber forest products).     

Mechanisms of C Sequestration in Soils of Latin America

Carbon (C) sequestration, defined as the process whereby atmospheric CO₂ is transferred into a long-lived C pool, is an important issue not only in the scientific community but also in the society at large because of its potential role in off-setting fossil fuel emissions. Through photosynthesis this C is stored in plants and through decomposition, trunks, branches, leaves and roots are incorporated in the soil via the action of different soil organisms, i.e., bacteria, fungi and invertebrates. This, together with the C exudates from roots that are utilized by microbial populations, constitutes the natural pathways of incorporating biomass-C into the soil. The amount of C stored in terrestrial ecosystems is the third largest among the global C pools. Soil organic carbon (SOC) up to 3 m is 2,344 Pg C (1 Petagram = 10¹⁵ g), and the SOC pool in tropical soils is approximately 30% of the global pool. Abiotic factors, which moderate C sequestration in soils are clay content, mineralogy, structural stability, landscape position, and soil moisture and temperature regimes. On the other hand, biotic factors involved in soil C sequestration are determined by the activities of soil organisms. However, models do not include the formation, stabilization and lifespan of the aggregates that have been biologically produced, including roots. This is not only due to the lack of studies on this subject, but also to overlooking the role of soil organisms in soil aggregation. Furthermore, there is a lack of comprehensive knowledge regarding the processes that control dissolved organic carbon (DOC) fluxes in soils and its role in the global budget of C sequestration. The boundaries of ecosystems are not considered in the studies of the subject, as it may be the case for terrestrial C sequestration, since the borders around the sites under study constitute pathways for the flow of C between sites and through the landscape. The concentrations of DOC in deep soil horizons and the contribution to DOC fluxes (exports) are relatively small, from 4 to 37 g DOC m^?2 yr^?1 retained in the mineral subsoil. In South America, although substantial research has been done under different ecosystems and land use systems in some countries, like Brazil, Colombia, Argentina, there is a need to conduct more studies with agreed standard methodologies in natural ecosystems and agricultural systems, and in other areas of Central America few studies have been undertaken to date. The principal objective of this review was to address the main mechanisms that determine SOC and SIC sequestration in soils of Latin America, and include: physical aggregate protection, SOC-clay interaction, DOC transport, bioturbation by soil organisms, and the formation of secondary carbonates. All of these mechanisms are generally explained by physical and chemical processes. In contrast, this review takes a soil ecological approach to describe the mechanisms listed above.     

Ecohydrological impacts of woody-plant encroachment: seasonal patterns of water and carbon dioxide exchange within a semiarid riparian environment

Across many dryland regions, historically grass‐dominated ecosystems have been encroached upon by woody‐plant species. In this paper, we compare ecosystem water and carbon dioxide (CO₂) fluxes over a grassland, a grassland–shrubland mosaic, and a fully developed woodland to evaluate potential consequences of woody‐plant encroachment on important ecosystem processes. All three sites were located in the riparian corridor of a river in the southwest US. As such, plants in these ecosystems may have access to moisture at the capillary fringe of the near‐surface water table. Using fluxes measured by eddy covariance in 2003 we found that ecosystem evapotranspiration (ET) and net ecosystem exchange of carbon dioxide (NEE) increased with increasing woody‐plant dominance. Growing season ET totals were 407, 450, and 639 mm in the grassland, shrubland, and woodland, respectively, and in excess of precipitation by 227, 265, and 473 mm. This excess was derived from groundwater, especially during the extremely dry premonsoon period when this was the only source of moisture available to plants. Access to groundwater by the deep‐rooted woody plants apparently decouples ecosystem ET from gross ecosystem production (GEP) with respect to precipitation. Compared with grasses, the woody plants were better able to use the stable groundwater source and had an increased net CO₂ gain during the dry periods. This enhanced plant activity resulted in substantial accumulation of leaf litter on the soil surface that, during rainy periods, may lead to high microbial respiration rates that offset these photosynthetic fluxes. March–December (primary growing season) totals of NEE were ?63, ?212, and ?233 g C m^?2 in the grassland, shrubland, and woodland, respectively. Thus, there was a greater disparity between ecosystem water use and the strength of the CO₂ sink as woody plants increased across the encroachment gradient. Despite a higher density of woody plants and a greater plant productivity in the woodland than in the shrubland, the woodland produced a larger respiration response to rainfall that largely offset its higher photosynthetic potential. These data suggest that the capacity for woody plants to exploit water resources in riparian areas results in enhanced carbon sequestration at the expense of increased groundwater use under current climate conditions, but the potential does not scale specifically as a function of woody‐plant abundance. These results highlight the important roles of water sources and ecosystem structure on the control of water and carbon balances in dryland areas.     

Fine Roots vs. Needles: A Comparison of 13C and 15N Dynamics in a Ponderosa Pine Forest Soil

Plant allocation patterns may affect soil C and N storage due to differences in litter quality and the depth of plant C and N inputs into the soil. We studied the dynamics of dual-labeled (¹³C/¹⁵N) Pinus ponderosa needles and fine roots placed at two soil depths (O and A horizon) in a temperate conifer forest soil during 2 y. Input of C as fine roots resulted in much more C retained in soil (70.5 ± 2.2% of applied) compared with needle C (42.9 ± 1.3% of applied) after 1.5 y. Needles showed faster mass loss, rates of soil ¹³CO₂ efflux, and more ¹⁵N immobilized into microbial biomass than did fine roots. The larger proportion of labile C compounds initially present in needles (17% more needle C was water soluble than in fine roots) likely contributed to its shorter C residence time and greater degree of transformation in the soil. A double exponential decay function best described the rate of ¹³C loss, with a smaller initial pulse of C loss from fine roots (S₁k₁) and a slower decay rate of the recalcitrant C pool for fine roots (0.03 y⁻¹) compared with (0.19 y⁻¹) for needles. Soil ¹³C respiration, representing heterotrophic respiration of litter C, was much more seasonal from the O horizon than from the A. However, offsetting seasonal patterns in ¹³C dynamics in the O horizon resulted in no net effect of soil depth on total ¹³C retention in the soil after 1.5 y for either litter. Almost 90% of applied litter N was retained in the soil after 1.5 y, independent of litter quality or soil depth. Very small amounts of ¹³C or ¹⁵N (<3% of applied) moved to the horizon above or below the placement depth (i.e., O to A or A to O). Our results suggest that plant allocation belowground to fine roots results in more C retained and less N mineralized compared with allocation aboveground to needles, primarily due to litter quality differences.     

Long-term Effects of Pre-harvest Burning and Nitrogen and Vinasse Applications on Yield of Sugar Cane and Soil Carbon and Nitrogen Stocks on a Plantation in Pernambuco, N.E. Brazil

Since the 1970s the area under sugarcane in Brazil has increased from 2 million to over 5 million ha (M ha), and it is expected to pass the 7 M ha mark in 2007. More than half of the cane is harvested to produce bioethanol as a fuel for light vehicles. The distilleries produce approximately 13 L of distillery waste (vinasse) for each litre of ethanol produced. In the 1980s there was considerable concern over the long-term effects of the disposal of this material (containing about 1% carbon and high in K) on cane yields if it was applied to the field. At the same time there was a growing movement to abandon the practice of pre-harvest burning and some research was showing that some Brazilian varieties of sugar cane were able to obtain significant contributions of N from plant-associated biological nitrogen fixation (BNF). For these reasons an experiment was installed on a cane plantation in the state of Pernambuco, NE Brazil to investigate the long-term effects of vinasse and N fertiliser additions and the practice of pre-harvest burning on crop and sugar yield, soil fertility parameters, N balance and soil C stocks. The results showed that over a 16-year period, trash conservation (abandonment of burning) increased cane yields by 25% from a mean of 46 to 58 Mg ha⁻¹. Vinasse applications (80 m³ ha⁻¹ crop⁻¹) increased mean cane and sugar yield by 12 to 13% and the application of 80 kg N ha⁻¹ as urea increased cane yields by 9%, but total sugar yield by less than 6% (from 7.0 to 7.4 Mg ha⁻¹ crop⁻¹). The total N balance for the soil/plant system when only the surface 20 cm of the soil was considered was positive in plots where no N fertiliser was added. However, the data indicated that during the 16 years of the study considerable quantities of soil organic matter were accumulated below 20 cm depth such that the N balance considering the soil to 60 cm depth was strongly positive, except where N fertiliser was added. The data indicated that there were considerable BNF inputs to the system, which was consistent with its low response to N fertiliser and low N fertiliser-use-efficiency. There were no significant effects of vinasse or urea addition, or trash conservation on soil C stocks, although the higher yields proportioned by trash conservation had potentially significant benefits for increased mitigation of CO₂ emissions where the main use of the cane was for bioethanol production.     

An activated sludge modeling framework for xenobiotic trace chemicals (ASM-X): Assessment of diclofenac and carbamazepine

Conventional models for predicting the fate of xenobiotic organic trace chemicals, identified, and calibrated using data obtained in batch experiments spiked with reference substances, can be limited in predicting xenobiotic removal in wastewater treatment plants (WWTPs). At stake is the level of model complexity required to adequately describe a general theory of xenobiotic removal in WWTPs. In this article, we assess the factors that influence the removal of diclofenac and carbamazepine in activated sludge, and evaluate the complexity required for the model to effectively predict their removal. The results are generalized to previously published cases. Batch experimental results, obtained under anoxic and aerobic conditions, were used to identify extensions to, and to estimate parameter values of the activated sludge modeling framework for Xenobiotic trace chemicals (ASM‐X). Measurement and simulation results obtained in the batch experiments, spiked with the diclofenac and carbamazepine content of preclarified municipal wastewater shows comparably high biotransformation rates in the presence of growth substrates. Forward dynamic simulations were performed using full‐scale data obtained from Bekkelaget WWTP (Oslo, Norway) to evaluate the model and to estimate the level of re‐transformable xenobiotics present in the influent. The results obtained in this study demonstrate that xenobiotic loading conditions can significantly influence the removal capacity of WWTPs. We show that the trace chemical retransformation in upstream sewer pipes can introduce considerable error in assessing the removal efficiency of a WWTP, based only on parent compound concentration measurements. The combination of our data with those from the literature shows that solids retention time (SRT) can enhance the biotransformation of diclofenac, which was not the case for carbamazepine. Model approximation of the xenobiotic concentration, detected in the solid phase, suggest that between approximately 1% and 16% of the total solid carbamazepine and diclofenac concentrations, respectively, is due to sorption—the remainder being non‐bioavailable and sequestered. We demonstrate the effectiveness of the model's predictive power over conventional tools in a statistical analysis, performed at four levels of structural complexity. To assess WWTP retrofitting needs to remove xenobiotic trace chemicals, we suggest using mechanistic models, e.g., ASM‐X, in regional risk assessments. For preliminary evaluations, we present operating charts that can be used to estimate average xenobiotic removal rates in WWTPs as a function of SRT and the xenobiotics mass loads normalised to design treatment capacity. Biotechnol. Bioeng. 2012; 109: 2757–2769. © 2012 Wiley Periodicals, Inc.