高通量测序技术在遗传性耳聋研究中的应用及研究进展

耳聋是一种常见的严重出生缺陷,阐明遗传性耳聋的致病机理不仅能够在临床上辅助诊断,为遗传咨询及耳聋预防提供依据,而且能促进人们更深入地了解耳聋的致病机制,开发新的治疗方法。随着基因组研究技术不断创新,以全基因组测序、全外显子组测序、目标区域测序为代表的高通量测序技术在遗传性耳聋研究中已得到广泛应用。本文总结了近5年全外显子组测序和目标区域测序在遗传性耳聋致病基因研究及临床分子诊断中应用及研究进展,希望能够有助于我国临床耳聋基因诊断技术的发展及诊断水平的提升。     

α1-肾上腺素受体介导交感神经对机体调节及针灸效应的研究情况分析

为明确近30年α_1-AR(a1-Adrenoceptor)介导交感神经对机体生理病理变化及针灸效应的研究情况,本文查阅CNKI数据库及Pubmed数据库,对近30年关于α_1-AR介导的交感神经对机体生理病理影响及针灸效应的研究情况进行系统回顾。发现α_1-AR不但介导交感神经对心脏的变力变时效应,以及血管平滑肌、膀胱括约肌和子宫平滑肌的收缩等生理效应的调节,还介导了心律失常、心肌肥大等病理过程,此外,α_1-AR还介导了针刺信号的传导,而且针刺还可以调节交感神经张力。说明机体的许多生理病理改变与α_1-AR及亚型的变化有密切关系,因此,深入研究α_1-AR将有助于阐释机体的生理病理机制,也为有效药物提供理论依据和相应的药理模型;对经脉穴位上α_1-AR的深入研究,有助于经络实质的探讨及针刺效应物质基础研究。     

Nogo-A蛋白在一氧化碳中毒大鼠海马组织中的动态表达

目的:观察一氧化碳中毒后大鼠海马组织中Nogo-A蛋白动态表达情况,探讨Nogo-A蛋白在一氧化碳中毒后神经系统损伤中的作用与影响。方法:随机数字法将雄性SD大鼠30只分为正常对照组(NC组)、CO中毒组(CO组)、CO中毒后24小时组(CO-24h)、CO中毒后48小时组(CO-48h)、CO中毒后7天组(CO-7d),每组各6只。CO气体腹腔注射染毒法建立一氧化碳中毒模型。建模后不同时间点利用免疫组织化学染色(IHC)、蛋白质免疫印迹技术检测(WB)Nogo-A蛋白在海马组织中的表达情况并分析其变化规律。结果:IHC结果表明NC、CO组、CO-24h组、CO-48h组、CO-7d组中Nogo-A蛋白平均光密度值分别为0.0928±0.0038、0.01172±0.0042、0.1452±0.0056、0.1271±0.0057、0.1088±0.0055;WB结果提示一氧化碳中毒后海马组织中Nogo-A蛋白的表达较NC组增高,在24h时表达达到高峰(P0.05);24h后表达开始逐步下降,至染毒第7天时,海马组织中Nogo-A蛋白的表达明显下降,但仍高于NC组(P0.05)。结论:在本研究中,大鼠海马组织中Nogo-A蛋白表达的增高与一氧化碳中毒相关;Nogo-A蛋白表达在24h时表达达到高峰;24h后表达开始逐步下降。     

Analysis of spatial and temporal patterns of aboveground net primary productivity in the Eurasian steppe region from 1982 to 2013

To explore the importance of the Eurasian steppe region (EASR) in global carbon cycling, we analyzed the spatiotemporal dynamics of the aboveground net primary productivity (ANPP) of the entire EASR from 1982 to 2013. The ANPP in the EASR was estimated from the Integrated ANPP_NDVI model, which is an empirical model developed based on field‐observed ANPP and long‐term normalized difference vegetation index (NDVI) data. The optimal composite period of NDVI data was identified by considering spatial heterogeneities across the study area in the Integrated ANPP_NDVI model. EASR's ANPP had apparent zonal patterns along hydrothermal gradients, and the mean annual value was 43.78 g C m^?2 yr^?1, which was lower than the global grasslands average. Compared to other important natural grasslands, EASR's ANPP was lower than the North American, South American, and African grasslands. The total aboveground net primary productivity (TANPP) was found to be 378.97 Tg C yr^?1, which accounted for 8.18%–36.03% of the TANPP for all grasslands. In addition, EASR's TANPP was higher than that of the grasslands in North America, South America, and Africa. The EASR's TANPP increased in a fluctuating manner throughout the entire period of 1982–2013. The increasing trend was greater than that for North American and South American and was lower than that for African grasslands over the same period. The years 1995 and 2007 were two turning points at which trends in EASR's TANPP significantly changed. Our analysis demonstrated that the EASR has been playing a substantial and progressively more important role in global carbon sequestration. In addition, in the development of empirical NDVI‐based ANPP models, the early–middle growing season averaged NDVI, the middle–late growing season averaged NDVI and the annual maximum NDVI are recommended for use for semi‐humid regions, semi‐arid regions, and desert vegetation in semi‐arid regions, respectively.     

New specific primers for amplification of the Internal Transcribed Spacer region in Clitellata (Annelida)

Nuclear molecular evidence, for example, the rapidly evolving Internal Transcribed Spacer region (ITS), integrated with maternally inherited (mitochondrial) COI barcodes, has provided new insights into the diversity of clitellate annelids. PCR amplification and sequencing of ITS, however, are often hampered by poor specificity of primers used. Therefore, new clitellate‐specific primers for amplifying the whole ITS region (ITS: 29F/1084R) and a part of it (ITS2: 606F/1082R) were developed on the basis of a collection of previously published ITS sequences with flanking rDNA coding regions. The specificity of these and other ITS primers used for clitellates were then tested in silico by evaluating their mismatches with all assembled and annotated sequences (STD, version r127) from EMBL, and the new primers were also tested in vitro for a taxonomically broad sample of clitellate species (71 specimens representing 11 families). The in silico analyses showed that the newly designed primers have a better performance than the universal ones when amplifying clitellate ITS sequences. In vitro PCR and sequencing using the new primers were successful, in particular, for the 606F/1082R pair, which worked well for 65 of the 71 specimens. Thus, using this pair for amplifying the ITS2 will facilitate further molecular systematic investigation of various clitellates. The other pair (29F/1084R), will be a useful complement to existing ITS primers, when amplifying ITS as a whole.     

Genetic structure and demographic history of Lymantria dispar (Linnaeus, 1758) (Lepidoptera: Erebidae) in its area of origin and adjacent areas

We analyzed the population genetic structure and demographic history of 20 Lymantria dispar populations from Far East Asia using microsatellite loci and mitochondrial genes. In the microsatellite analysis, the genetic distances based on pairwise F_ST values ranged from 0.0087 to 0.1171. A NeighborNet network based on pairwise F_ST genetic distances showed that the 20 regional populations were divided into five groups. Bayesian clustering analysis (K = 3) demonstrated the same groupings. The populations in the Korean Peninsula and adjacent regions, in particular, showed a mixed genetic pattern. In the mitochondrial genetic analysis based on 98 haplotypes, the median‐joining network exhibited a star shape that was focused on three high‐frequency haplotypes (Haplotype 1: central Korea and adjacent regions, Group 1; Haplotype 37: southern Korea, Group 2; and Haplotype 90: Hokkaido area, Group 3) connected by low‐frequency haplotypes. The mismatch distribution dividing the three groups was unimodal. In the neutral test, Tajima's D and Fu's FS tests were negative. We can thus infer that the Far East Asian populations of L. dispar underwent a sudden population expansion. Based on the age expansion parameter, the expansion time was inferred to be approximately 53,652 years before present (ybp) for Group 1, approximately 65,043 ybp for Group 2, and approximately 76,086 ybp for Group 3. We propose that the mixed genetic pattern of the inland populations of Far East Asia is due to these expansions and that the inland populations of the region should be treated as valid subspecies that are distinguishable from other subspecies by genetic traits.     

高脂饲养青春期大鼠电击回避反应和海马CA3区场电位的改变

目的：观察高脂饲养至青春期的大鼠对电击回避反应和海马CA3区实时局部场电位变化。方法：断乳1周幼鼠改用基础饲料和高脂饲料分别喂养4周至青春期,分为基础饲料组（BF组）和高脂饲料组（HFD组）,Y型迷宫电击回避训练方法,记录2组大鼠电击回避达学会标准的相关参数,同时无线遥测大鼠达标时海马CA3区实时局部场电位。结果：与BF组大鼠比较,HFD组大鼠体重明显增加,Y型迷宫电击回避训练1~2 d大鼠达标百分率、电击回避达标各项指标均略优于BF组;双侧海马CA3区局部场电位节律出现去同步化快波改变,右侧海马CA3区出现了θ波和γ 1波百分比的同步性增加,但无θ~γ 1波相位-振幅耦合出现。结论：幼年期短期高脂饮食至青春期的大鼠,尽管体重较基础饲料大鼠增加,但未见Y型迷宫电击回避反应能力和海马依赖性空间认知功能的减退。     

贵州矮马IGF-I启动子-529 CpG甲基化及个别核苷酸变异与贵州矮马矮小表型有关

胰岛素样生长因子（insulin-like growth factors,IGFs）和生长（激）素（growth hormone,GH）是动物机体主要的促生长因子,它们的表达水平直接决定成熟个体的高度。贵州矮马的体高明显低于伊犁马等大型马,但其原因尚不清楚。本研究从贵州矮马基因组DNA中克隆了GH和IGF-I基因5′-侧翼序列,分别为239 bp和817 bp,包括部分启动子结构;进而采用生物信息学、比较基因组学方法对比分析了贵州矮马与伊犁马两个基因5′-侧翼序列/启动子的转录因子结合位点及潜在甲基化位点（CpG岛）分布。亚硫酸氢盐PCR测序法（bisulfite sequencing PCR,BSP）显示,两个马群的GH基因5′-侧翼区域（239 bp）内的6个CpG位点均发生了甲基化,甲基化频率无明显差异。然而,在IGF-I基因5′-侧翼区的148 bp片段内含有4个CpG位点中,贵州矮马的-529 bp处CpG位点的甲基化程度明显高于伊犁马（P < 0.01）,且该甲基化位点处于基本启动子邻近3′端;此外,两个马群IGF-I基因5′-侧翼区的-561 bp处检测到T、C碱基改变,导致贵州矮马的顺式调控元件/转录因子结合位点较伊犁马少1个,有可能影响IGF-I基因的转录效率。血清IGF-I浓度测定揭示,贵州矮马血清IGF-I含量极显著低于伊犁马（P< 0.01）。Spearman相关性结果显示,贵州矮马及伊犁马的IGF-Ⅰ基因甲基化频率与血清IGF-I浓度呈中度负相关（r=-0.468）,提示IGF-Ⅰ基因甲基化抑制其编码蛋白质的表达。结果证明,IGF-I启动子高甲基化及某些核苷酸（碱基）序列变异可能是贵州矮马个体矮小的部分原因。     

Stability of HIV-1 subtype B and C Tat is associated with variation in the carboxyl-terminal region

The multifunctional trans-activator Tat is an essential regulatory protein for HIV-1 replication and is characterized by high sequence diversity. Numerous experimental studies have examined Tat in HIV-1 subtype B, but research on subtype C Tat is lacking, despite the high prevalence of infections caused by subtype C worldwide. We hypothesized that amino acid differences contribute to functional differences among Tat proteins. In the present study, we found that subtype B NL4-3Tat and subtype C isolate HIV1084 i Tat exhibited differences in stability by overexpressing the fusion protein Tat-Flag. In addition, 1084 i Tat can activate LTR and NF-κB more efficiently than NL4-3 Tat. In analyses of the activities of the truncated forms of Tat, we found that the carboxylterminal region of Tat regulates its stability and transactivity. According to our results, we speculated that the differences in stability between B-Tat and C-Tat result in differences in transactivation ability.