Beyond the prolegomenon: a molecular phylogeny of the Australian camaenid land snail radiation

From an analysis of over 900 specimens of camaenid land snails, we have assembled a molecular phylogeny of 327 tips covering > 70% genera across the entire continent of Australia and including > 90% of eastern species. Our approach emphasizes sampling to identify lineage flocks from populations down to build a hierarchical gene‐by‐taxa tapestry or supermatrix dataset using three mitochondrial genes, then analysed with Markov chain Monte Carlo and fast maximum likelihood methods. Similarity amongst taxa set results suggests missing data cause only minor distortions. This is supplemented by a separate higher level 28S rDNA phylogeny for a global scale perspective. The shallow divergence of Australasian forms, and their nesting within South‐East Asian groups within the Helicoidea supergroup extending from Europe to North America, is consistent with the Solem hypothesis of Laurasian immigration of c. Miocene origin, and so being more than 400 species in 80‐plus genera spread across the continent of Australia from rainforest to desert, forms an immense radiation. There is a major distinction between eastern and western lineages, with some key exceptions. Finer scale patterns of relictual endemics indicate that many ancestral lineages were in place before the major decline and breakup of the Tertiary mesic forest realm that once dominated Gondwanan Australia, and so chart the phylogenetic turnover of ecosystem change from mesic to xeric. The various higher classification schemes proposed all founder on the sheer scale of this radiation. Of 30 polytypic genera tested, at least 18 are not monophyletic, highlighting (1) the repeated radiation of shell forms, and (2) that the current higher taxonomy is unacceptable. Here we provide a phylogenetic and biogeographically condign arrangement as the basis for future elaborations. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 161 , 531–572.     

Exclusion effects on vegetation characteristics and their correlation to soil factors in the semi-arid rangeland of Mu Us Sandland,China

Exclusion has been applied as a main measure for re-vegetation all over the world.This paper,by comparing the results of year-round exclusion,seasonal exclusion,and non-exclusion,quantified the vegetation variations under three different exclusion measures and their correlation to soil factors.The analysis results for community species component and plant diversity using multi-response permutation procedures (MRPPs)showed that exclusion did change the species component and increase plant diversity remarkably,while the period of exclusion had no significant influence on these two community features.The indicator species analysis and calculation of similarity indices indicated that community for year-round exclusion were becoming xerophytization and unpalatability,and showed highly spatial heterogeneity of plant species distribution,whereas community for seasonal exclusion was under stable non-equilibrium condition.Detrended correspondence analysis (DCA)and detrend canonical correspondence analysis (DCCA)results of relationship between plant species and soil variables demonstrated that soil moisture was a controlling factor for plant species component,microbiotic soil crust cover,soil organic matter,and soil bulk density had significant effects on soil moisture,among which microbiotic soil crust was a leading factor owing to its limitation to rainfall infiltration on the one hand,and its constraints to entrance of herbaceous seeds into soil or to germination of soil seeds on the other hand.As a result of long-term removal of animal grazing,crust kept intact in year-round exclusion community,which was a main reason of community xerophytization.It was also obvious from ordination results that some important environmental factors,such as tempo-spatial change of rainfall and corresponding tempo-spatial change of soil moisture,were neglected during direct gradient analysis.In addition,biodiversity was close related to soil nutrients as well as to soil moisture condition (soil water content and crust cover),and it had positive relation to available N,and negative relation to available P.Higher soil N had advantage to non-leguminous plants growth on nutrition-poor sand land definitely.The impact of P to community component was unclear and should be studied from plant physiology.Further researches on nonequilibrium theory in semi-arid rangeland will provide a scientific and flexible animal development paradigm for being implementing livestock fen-raising and grazing-forbidden policies in China.     

Stand characteristics and biodiversity indicators along the productivity gradient in boreal forests: Defining a critical set of indicators for the monitoring of habitat nature quality

Abstract

We quantified the effects of anthropogenic disturbances on the structure and biodiversity of boreal forests on acidic soils and created a statistically supported rational set of indicators to monitor the stand “naturalness”. For that, we surveyed various traits of tree layer, understory, herb layer, forest floor and several widely accepted biodiversity epiphytic indicators in 252 old‐aged boreal stands in Estonia, mostly dominated by Scots pine or Norway spruce. Multifactorial general linear model analyses showed that many forest characteristics and potential indicators were confounded by the gradient of soil productivity (reflected by the forest site type), local biogeographic gradients and also by stand age. Considering confounding effects, boreal forests in a near‐natural state have more large‐diameter trees (diameter at breast height >40 cm) and larger variety of diameter classes, higher proportion of spruce or deciduous trees, a larger amount of coarse woody debris in various stages, a more closed tree canopy and denser understory than managed mature forests. By increasing light availability above the field layer, forest management indirectly increases the coverage of herbs and lichens on the forest floor but reduces the alpha‐ and beta‐diversity of herbs and the proportion of graminoids. Human disturbances reduce the relative incidence of many commonly accepted biodiversity indicators such as indicator lichens, woodpeckers, wood‐dwelling insects or fungi on trees. The test for the predictive power of characteristics reacting on disturbance revealed that only a fraction of them appeared to be included in a diagnostic easy‐to‐apply set of indicators to assess the nature quality of boreal forest: the amount of dead wood, the proportion of deciduous trees, the presence of specially shaped trees and woodpeckers and, as an indicator of disturbances, the forest herb Melampyrum pratensis. Many of these indicators have already been implemented in practice.     

The pristine rain forest? Remnants of historical human impacts on current tree species composition and diversity

Abstract Aim Tropical rain forests are often regarded as pristine and undisturbed by humans. In Central Africa, community‐wide disturbances by natural causes are rare and therefore current theory predicts that natural gap phase dynamics structure tree species composition and diversity. However, the dominant tree species in many African forests recruit poorly, despite the presence of gaps. To explain this, we studied the disturbance history of a species‐rich and structurally complex rain forest. Location Lowland rain forest in Southern Cameroon. Methods We identified the recruitment conditions of trees in different diameter classes in 16 ha of species‐rich and structurally complex ‘old growth’ rain forest. For the identification of recruitment preference we used independent data on the species composition along a disturbance gradient, ranging from shifting cultivation fields (representing large‐scale disturbance), to canopy gaps and old growth forest. Results In nine of sixteen 1‐ha forest plots the older trees preferred shifting cultivation fields for recruitment while younger trees preferred gaps and closed forest conditions. This indicates that these nine sites once experienced large‐scale disturbances. Three lines of evidence suggest that historical agricultural use is the most likely disturbance factor: (1) size of disturbed and undisturbed patches, (2) distribution of charcoal and (3) historical accounts of human population densities. Main conclusions Present‐day tree species composition of a structurally complex and species‐rich Central African rain forest still echoes historical disturbances, most probably caused by human land use between three to four centuries ago. Human impact on African rain forest is therefore, contrary to common belief, an issue not of the last decades only. Insights in historical use will help to get a more balanced view of the ‘pristine rain forest’, acknowledging that the dualism between ‘old growth’ and ‘secondary’ forest may be less clear than previously thought.     

城市公园和郊区公园生物多样性评估的指标

随着城市化进程的加快,城市的生物多样性不可避免地受到城市化的各种影响,城市及其郊区的生物多样性保护越来越受到人们的重视。城市公园与郊区公园中往往具有高度多样化的生境,并保存着某些自然植被片段和动物物种,那里的生物多样性较高。可见,在城市和郊区的生物多样性保护中,公园生物多样性的保护是一个非常关键的环节,而对其生物多样性的评估又是有效保护的基础。目前,我国生物多样性评估方面的研究工作多集中于物种水平,而对生境的研究较少,但实践证明,保护生境比保护物种更为重要。本文介绍了比利时学者Hermy & Cornelis在比利时西佛兰德省的Loppem市立公园的保护实践中构建的一种对城市公园和郊区公园中的生物多样性进行评估的方法。该方法从两个方面展开：生境多样性和物种多样性。在生境水平上,首先对各种生境单元进行分类,这些单元被分为面状、线状和点状要素。针对每种要素,分别计算了Shannon-Wiener多样性指数和饱和度指数。饱和度指数是实际的多样性指数与最大可能的多样性指数之比。在物种水平上,使用了物种数、Shannon-Wiener多样性指数和饱和度指数来评估公园中的高等植物、蝴蝶、两栖动物和饲养的鸟类等物种。这样,就获得了20个生物多样性指标,根据这些指数就可以对Loppem市立公园内的生物多样性进行评估。结合我国生物多样性评估工作的实际要求,文章最后对上述方法进行了讨论,指出该方法对我国公园的生物多样性评估工作具有借鉴意义,但在运用时各地需要结合本地的实际情况。     

秦岭南坡油松-锐齿槲栎混交林群落不同层次多样性特征及环境解释

在秦岭山脉南坡陕西省境内设置11个样地进行实地调查,从植物物种组成、多样性指数差异以及多样性指数沿环境梯度排序等方面对该区域油松-锐齿槲栎天然混交林的群落总体以及乔木层、灌木层、草本层的各自4个α多样性指数（Patrick丰富度指数、Simpson优势度指数、Shannon-Wiener多样性指数、Pielou均匀度指数）特征进行分析,以揭示该群落多样性特征及其与环境因素的关系。结果显示：（1）11个样地共记录维管束植物112种,隶属于45科77属,分布较广的物种有蔷薇科、菊科、百合科、松科、禾本科和忍冬科。（2）研究区群落中建群种锐齿槲栎和油松的优势地位突出,乔木层伴生种稀少,平均仅为4.8种,多样性水平较低;灌木层物种组成丰富,平均11.4种;草本层次之,平均9种。（3）单因素方差分析表明,该群落不同层次的多样性指数之间均存在极显著差异（P<0.01）;LSD多重比较及多样性指数变化趋势分析表明,群落多样性水平表现为总体>灌木层>草本层>乔木层。（4）CCA法将群落不同层次多样性指数沿地形因子和土壤养分等12项环境指标梯度的分布划分为界线明显的3个区域,即Ⅰ区（中等浓度土壤磷素和有机质制约区）、Ⅱ区（非环境因子制约区）和Ⅲ区（高浓度土壤磷素制约区）;群落总体多样性主要受灌木层影响,同时也受乔木层均匀度影响,但环境因子对乔木层多样性基本无限制性作用。（5）土壤速效磷、全磷和有机质是造成研究区群落不同层次多样性差异的主要因素,海拔、坡向等地形因子对群落多样性影响不大,可能是由于土壤养分的直接影响削弱了地形因子的间接性生态作用。研究表明：保持中等水平的土壤速效磷（3.775±1.529 mg·kg^-1）和有机质含量［（4.079±1.001）%］,并通过合理补植松栎幼树和伐除枯死木等抚育手段提高乔木层均匀度是维持秦岭南坡油松-锐齿槲栎混交林群落生物多样性的有效措施。     

河流着生藻类多样性对城镇化的响应——以深圳市为例

着生藻类是河流生态状况的重要指示生物,然而关于城镇化对着生藻类多样性影响的研究还较缺乏。基于深圳市9条主要河流74个样点2020年雨、旱季的调查数据,对比了城区、郊区河流样点的着生藻类α、β多样性。两次调查共鉴定出着生藻类301个分类单元,其中硅藻门种类最多。谷皮菱形藻(Nitzschia palea)、隐头舟形藻(Navicula cryptocephala)、平庸菱形藻(Nitzschia inconspicua)等污染指示种在城区组相对丰度更高,而清洁指示种微小曲丝藻(Achnanthidium minutissimum)在郊区组相对丰度更高。城镇化对着生藻类物种丰富度、香农维纳多样性指数、Pielou均匀度指数等α多样性指数均无显著影响,但对着生藻类群落结构有显著影响。城区组样点的着生藻类β多样性(用主坐标分析质心指示)低于郊区组,城区组与郊区组藻类β多样性差异在旱季更为显著。两组样点的藻类β多样性差异主要来源于物种周转组分。与城区组着生藻类群落显著相关的环境因子包括总氮、高锰酸钾指数、电导率、pH、浊度和水深,而与郊区组着生藻类群落显著相关的是总氮、溶解性无机磷和电导率。研究...