Two Reproductive Life History Types of Kokanee, Onchorynchus nerka, Exhibit Multivariate Morphometric and Protein Genetic Differentiation

Two reproductive types of kokanee are found in Okanagan Lake, British Columbia: one form that spawns in streams, and another that spawns approximately 2–4 weeks later along beaches of the lake. We examined the levels and patterns of genetic and morphometric variation among three populations (1 beach and 2 stream populations) to better understand life history differentiation. We assayed allozyme variation at 74 loci and identified 15 P_0.095 loci. Average F_ST was 0.041 among the three samples; the two stream-spawning populations grouped together in genetic distance analyses. We examined multivariate morphometric variation and fin size/shape variation using 35 truss characters. Populations did not sort morphologically by spawning type in principal component and relative warp analyses. Instead both analyses indicated that one stream-spawning population (Peachland Creek) was significantly more robust and had shallower caudal fins in comparison to the other samples. Second, clear multivariate shape differences between males and females were identified involving jaw size, mid-body dimensions, and caudal fin shape. A simple bivariate plot of tail `forkness' against fork length demonstrated that males had more forked tails and females had flattened tails. Level of differentiation of secondary sexual characteristics did not vary between the spawning types, although the beach-spawning population and one stream-spawning population did not show the strong, gender-discriminating variability in tail forkness. Although these two reproductive life history types of kokanee form discrete genetic groups, environmental differences are apparently insufficient to effect consistent differences in body shape, or fin size and shape between stream and beach-spawning morphs.     

我国华东沿海4种石磺形态学比较

我国华东沿海分布有瘤背石磺(Onchidium struma)、平疣桑椹石磺(Platevindex mortoni)、里氏拟石磺(Paraoncidium reevesii)、紫色疣石磺(Peronia verruculata)4属4种石磺,后3种为我国大陆沿海新纪录种。通过野外实地调查和实验室暂养分别观察了其生态习性及外部形态,测定外形主要生物学性状指标进行统计分析;同时解剖比较4种石磺的生殖系统和消化系统等内部结构。结果显示,4种石磺的生活区域分别从潮间带中潮区至高潮区再到潮上带而呈现梯度分布状态,生活区域的不同导致生活习性、呼吸方式的不同;4种石磺外部形态差别明显,身体背部和腹足的颜色不同,平疣桑椹石磺没有背眼,腹足灰黑色或灰白色,惟紫色疣石磺有树枝状鳃;在内部结构中,平疣桑椹石磺无阴茎附属腺,里氏拟石磺无阴茎牵引肌且与紫色疣石磺一样不具有肛门腺。主要生物学性状数据分析得出足长和足宽是典型代表数据,判别分析得出呼吸孔至身体末端距离与肛门至呼吸孔距离的比例是属种间具有显著性意义的观察指标,从外形及内部主要结构比较发现将它们分属4个种是准确的。外部形态的特殊结构以及内部结构主要差异可作为石磺科分类的主要依据;比较我国华东沿海石磺的形态学差异能为石磺科贝类模式种资料的重新修订提供良好的研究基础。     

Empirical phylogenies and species abundance distributions are consistent with preequilibrium dynamics of neutral community models with gene flow

Community characteristics reflect past ecological and evolutionary dynamics. Here, we investigate whether it is possible to obtain realistically shaped modeled communities–that is with phylogenetic trees and species abundance distributions shaped similarly to typical empirical bird and mammal communities–from neutral community models. To test the effect of gene flow, we contrasted two spatially explicit individual‐based neutral models: one with protracted speciation, delayed by gene flow, and one with point mutation speciation, unaffected by gene flow. The former produced more realistic communities (shape of phylogenetic tree and species‐abundance distribution), consistent with gene flow being a key process in macro‐evolutionary dynamics. Earlier models struggled to capture the empirically observed branching tempo in phylogenetic trees, as measured by the gamma statistic. We show that the low gamma values typical of empirical trees can be obtained in models with protracted speciation, in preequilibrium communities developing from an initially abundant and widespread species. This was even more so in communities sampled incompletely, particularly if the unknown species are the youngest. Overall, our results demonstrate that the characteristics of empirical communities that we have studied can, to a large extent, be explained through a purely neutral model under preequilibrium conditions.     

Interhelical hydrogen bonds and spatial motifs in membrane proteins: polar clamps and serine zippers

Polar and ionizable amino acid residues are frequently found in the transmembrane (TM) regions of membrane proteins. In this study, we show that they help to form extensive hydrogen bond connections between TM helices. We find that almost all TM helices have interhelical hydrogen bonding. In addition, we find that a pair of contacting TM helices is packed tighter when there are interhelical hydrogen bonds between them. We further describe several spatial motifs in the TM regions, including "Polar Clamp" and "Serine Zipper," where conserved Ser residues coincide with tightly packed locations in the TM region. With the examples of halorhodopsin, calcium-transporting ATPase, and bovine cytochrome c oxidase, we discuss the roles of hydrogen bonds in stabilizing helical bundles in polytopic membrane proteins and in protein functions.     

Effects of different gelling agents on the different stages of rice regeneration in two rice cultivars

Plant tissue culture technology offers a solution for meeting the increasing commercial demand on economically important plants such as rice, a widespread dietary staple. However, significant genotype-specific morphogenetic responses constitute a considerable on rice regeneration in plant biotechnology contexts. Aside from genotype dependency, the components of the nutrient media including gelling agents have an important impact on regeneration efficiency. The current study explores the effect of different gelling agents on various stages of rice regeneration in two Egyptian rice cultivars-Sakha104 and Giza178. Media solidified with varying concentrations of a variety of gelling agents (agar, bacto agar, gelrite and phytagel) were tested for their impact on the frequency of callus induction, shoot regeneration and rooting. The results indicated gellan gum (gelrite and phytagel) was superior to agar products (agar and bacto agar) for callus induction. By contrast, no significant differences were found between different gelling agents for shoot regeneration. Gellan gum and media solidified with bacto agar were found to lead to significantly higher root regeneration than agar. The Sakha104 cultivar showed better responses than Giza 178 for callus induction and similar performance to the Giza 178 cultivar for root regeneration irrespective of the gelling agent. This work provides insights into the impact of different gelling agents on the morphogenetic response of two rice cultivars and can be used to help maximize the frequency of rice regeneration.     

Molecular characterization of human platelet glycoproteins IIIa and IIb and the subunits of the latter

Sedimentation equilibrium and low-angle laser-light scattering were used to determine the molar mass of the glycoprotein moieties in the complexes of sodium dodecyl sulphate with the human platelet membrane glycoproteins IIb (GPIIb), IIIa (GPIIIa), and the (GPIIb) and (GPIIb) subunits of GPIIb. The values obtained by both procedures, except those for GPIIb, agree within experimental error with those calculated from their chemical composition: GPIIb (114,000 g mol^-1), GPIIb (22,200 g mol^-1), and GPIIIa (91,500 g mol^-1). The molar mass of GPIIb determined by light scattering (142,000 g mol^-1) and sedimentation equilibrium at different solvent densities (134,000 g mol^-1) also agree, within experimental error, with the values calculated either from its chemical composition (136,500 g mol^-1) or from the sum of the molar masses of its subunits. However the molar mass determined by sedimentation equilibrium at constant solvent density, is consistently underestimated (116,000 g mol^-1).High-performance size-exclusion chromatography in sodium dodecyl sulphate solutions overestimates the molar mass of these glycoproteins and their Stokes radii, and therefore the maximal frictional ratios derived from them.Abbreviations GPIIb glycoprotein IIb - GPIIIa glycoprotein IIIa - GPIIb and GPIIb and subunits of GPIIb, respectively - CM-GPIIb CM-GPIIb, and CM-GPIIIa, totally reduced and carboxymethylated forms of GPIIb, GPIIb, and GPIIIa, respectively - SDS sodium dodecyl sulphate - eosin-ITC eosin-5-isothiocyanate     

Species specificity and sexual dimorphism in tooth shape among the three sympatric haplochromine species in Lake Kivu cichlids

Tooth shape is used to differentiate between morphologically similar species of vertebrates, including fish. This study aimed to quantify tooth shape of three sympatric species: Haplochromis kamiranzovu, H. insidiae, and H. astatodon endemic to Lake Kivu, whose existing identification criteria are currently only qualitative. A quantitative tooth shape analysis was performed based on digitized tooth outline data with a subsequent elliptic Fourier analysis to test for differences among the three species. We looked at crown shape and size differences within H. kamiranzovu and H. insidiae at geographical, habitat, and gender levels. No comparison at habitat level was done for H. astatodon because it is found only in littoral zone. The analysis revealed significant tooth shape differences among the three species. Haplochromis astatodon had a significantly longer major cusp height and a longer and larger minor cusp than that of H. insidiae. It had also a longer major cusp height and a longer and larger minor cusp than that of H. kamiranzovu. Tooth shape differences of H. kamiranzovu and H. insidiae species were not significantly different between littoral and pelagic fish (p > .05) while differences were significant between southern and northern Lake Kivu populations (p < .05). Tooth sizes in H. kamiranzovu and H. insidiae were significantly different, both in height and width as well as in their ratios, and this was true at sex and geographic levels (p < .05), but not at habitat level (p > .05). Tooth shape was also significantly different with sharp teeth for males compared with females of southern populations versus northern ones. These shape‐ and size‐related differences between sexes suggest differences in the foraging strategies toward available food resources in the lake habitat. Further research should explain the genetic basis of the observed pattern.     

Sexual selection,phenotypic variation,and allometry in genitalic and non‐genitalic traits in the sexually size‐dimorphic stick insect Micrarchus hystriculeus

The mobility hypothesis could explain the evolution of female‐biased size dimorphism if males with a smaller body size and longer legs have an advantage in scramble competition for mates. This hypothesis is tested by performing a selection analysis in the wild on Micrarchus hystriculeus (Westwood) (Phasmatodea), a sexually size dimorphic stick insect endemic to New Zealand. This analysis examined the form and strength of sexual selection on body size, leg lengths (front, mid and hind), and clasper size (a genitalic trait), and also quantified the degree of phenotypic variation and the allometric scaling pattern of these traits. By contrast to the mobility hypothesis, three lines of evidence were found to support significant stabilizing sexual selection on male hind leg length: a significant nonlinear selection gradient, negative static allometry, and a low degree of phenotypic variation. Hind leg length might be under stabilizing selection in males if having average‐sized legs facilitates female mounting or improves a male's ability to achieve the appropriate copulation position. As predicted, a negative allometric scaling pattern and low phenotypic variation of clasper size is suggestive of stabilizing selection and supports the ‘one‐size‐fits‐all’ hypothesis. Opposite to males, the mid and hind leg lengths of females showed positive static allometry. Relatively longer mid and hind leg lengths in larger females might benefit individuals via the better support of their larger abdomens. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 471–484.