Grazer exclusion alters plant spatial organization at multiple scales,increasing diversity

Grazing is one of the most important factors influencing community structure and productivity in natural grasslands. Understanding why and how grazing pressure changes species diversity is essential for the preservation and restoration of biodiversity in grasslands. We use heavily grazed subalpine meadows in the Qinghai‐Tibetan Plateau to test the hypothesis that grazer exclusion alters plant diversity by changing inter‐ and intraspecific species distributions. Using recently developed spatial analyses combined with detailed ramet mapping of entire plant communities (91 species), we show striking differences between grazed and fenced areas that emerged at scales of just one meter. Species richness was similar at very small scales (0.0625 m²), but at larger scales diversity in grazed areas fell below 75% of corresponding fenced areas. These differences were explained by differences in spatial distributions; intra‐ and interspecific associations changed from aggregated at small scales to overdispersed in the fenced plots, but were consistently aggregated in the grazed ones. We conclude that grazing enhanced inter‐ and intraspecific aggregations and maintained high diversity at small scales, but caused decreased turnover in species at larger scales, resulting in lower species richness. Our study provides strong support to the theoretical prediction that inter‐ and intraspecific aggregation produces local spatial patterns that scale‐up to affect species diversity in a community. It also demonstrates that the impacts of grazing can manifest through this mechanism, lowering diversity by reducing spatial turnover in species. Finally, it highlights the ecological and physiological plant processes that are likely responding to grazing and thereby altering aggregation patterns, providing new insights for monitoring, and mediating the impacts of grazing.     

A morphometric analysis of Scottish Athyrium distentifolium: a contribution to the BAP

Summary

A morphologically distinct variety of Athyrium distentifolium called A. distentifolium var. flexile has been found only in Scotland. Research was undertaken for aUK Biodiversity Action Plan. To confirm that this taxon has a definitely recognisable morphology, a morphometric analysis was used on the range of characters used to define this variety. It showed that it can be clearly differentiated.     

Maintenance and recovery of rare clonal plants: the Case of the twinflower (Linnaea borealis L.)

Summary

Populations of rare clonally spreading species are increasingly being shown to be composed of one or a few genotypes. Clones have potentially unlimited life but two factors, genetic erosion due to random events and increasing accumulation of genetic load in older genotypes, combine to expose them to sexual failure and loss of fertility. Non-breeding clonal populations are at risk of extinction because they lack the ability to adapt or escape from changing environments.

Twinflower (Linnaea borealis L.) has been lost from nearly 50 % of its pre-1970 sites. It is a clonal self-incompatible plant and sexual failure has been reported from Canada, Britain and Scandinavia. Sexual failure is due to high levels of within-clone pollination by flies. Seed set occurs naturally in Scottish populations which have some genetic diversity. A non-breeding population in Scotland has been restored to viability by experimental cross-pollination with pollen from a distant source. Conservation action for this species should therefore be directed to the prevention of loss of habitat and restoration of population viability by translocation of compatible mates.

Translocating plants into extant, but non-breeding, populations are still a matter of debate and are frequently opposed. However, experimental translocations must now be performed to establish whether intervention can secure the long-term survival of rare clonal plants without the constant need for re-introduction.     

A Miocene leaf fossil record of Rosa (R. fortuita n. sp.) from its modern diversity center in SW China

Roses (Rosa, Rosaceae) are arguably the most admired ornamental plants in the world. Southwestern China is the center of diversity for many extant native species of Rosa and fossils found in this region are critical for understanding the evolution of this genus. Herein, we report a leaf fossil record with good preservation from the late Miocene of Yunnan Province. The opposite and odd-pinnate leaf is composed of seven elliptical leaflets, with close, crenulate, and regular marginal teeth. The stipules are lanceolate and adnate to the petiole. Additionally, the secondary veins are semicraspedodromous, showing the same venation pattern as most living Rosa species in southwestern China. On the basis of the extensive morphological comparisons, we propose a new species, R. fortuita T. Su et Z.K. Zhou n. sp. This is the first confirmed Rosa leaf fossil record in China, and the discovery of R. fortuita n. sp. indicates that Rosa existed in southwestern China by the late Miocene. It suggests that Rosa was distributed in subtropical or temperate forests and shared a similar ecological niche as Rosa in Europe during the Oligocene and Miocene. The modern diversification of Rosa in southwestern China is thought to have been closely associated with the continuous uplift of the Qinghai-Tibet Plateau since the late Miocene, creating complex topography and a variety of climate conditions.     

乙型肝炎病毒X蛋白的优势氨基酸序列与热点突变位点的生物信息学分析

乙型肝炎病毒X蛋白(hepatitis B virus X protein,HBx)全长154个氨基酸,与肝癌发生密切相关.为确定HBx的优势氨基酸序列和热点突变位点,在GenBank中下载所有HBx的氨基酸序列13950条,剔除插入突变、缺失突变和起始密码子非甲硫氨酸的序列,最后保留7126条.通过分析这7126条序列,计算出HBx每个位点的氨基酸分布情况,出现频率最高的氨基酸为该位点的优势氨基酸,其他氨基酸为突变氨基酸.154个位点的优势氨基酸组成HBx优势氨基酸序列.突变率>10.0%的热点突变位点有32个.其中第36、42、44、87、88和127位氨基酸有4种(突变率>1.0%)以上突变形式,具有较高的多态性.与肝癌密切相关的K130M/V131I双突变率为34.7%.通过7126条HBx序列与优势序列的同源性比较,随机选出其中50条序列(2条与优势序列同源性<75%,48条同源性为76%~99%),与23条参考序列及优势序列共同构建系统发生树.结果显示,HBx优势氨基酸序列属于基因型C,这与基因型C为全球主要流行型一致.本研究首次系统性分析了GenBank中HBx的优势序列,确定了32个HBx热点突变位点和6个多态性较高的位点,为基于HBx突变的基础和应用研究奠定了基础.     

On the importance of taking into account agricultural practices when defining conservation priorities for regional planning

Conserving biodiversity in managed landscapes requires the definition of spatial conservation priorities. The systematic conservation planning tools which are used to define these conservation priorities, assess the vulnerability of different locations by combining two different elements: some measurement of the biological assets in question, and some measurement of the key processes which threaten these biological assets. For instance, in cumulative impact mapping, maps of individual human activities that impact ecosystems (hereafter referred to as ‘stressor’ for individual maps and ‘cumulative stressor’ for combined maps) are overlaid with maps of ecosystem vulnerability, in order to estimate the overall ecological impact of human activities on natural ecosystems. These tools are appealing because they are easy to use and inform regional land planning. However, given that once these spatial conservation priorities are defined they potentially have far-reaching consequences, there is a need to test their robustness and reliability. Here we propose to investigate how the uncertainties related to the estimation of a cumulative stressor layer affect the definition of spatial conservation priorities. We conduct a sensitivity analysis of the different ways of estimating major stressors related to human activities (transport, urbanization and population) with a specific focus on agriculture. We show that spatial conservation priorities are little sensitive to most of the parameters and input data used to estimate the cumulative stressor map. In particular, they are not very sensitive to changes in spatially overlapping stressors, i.e. those which overlap spatially with other stressors. However, our analyses also reveal that spatial conservation priorities are highly sensitive to how the agriculture stressor is defined. These results highlight the importance of better understanding how agricultural activities impact biodiversity and establishing how more accurate information on agricultural practices can be used to define spatial conservation priorities.     

Data gaps in anthropogenically driven local‐scale species richness change studies across the Earth's terrestrial biomes

There have been numerous attempts to synthesize the results of local‐scale biodiversity change studies, yet several geographic data gaps exist. These data gaps have hindered ecologist's ability to make strong conclusions about how local‐scale species richness is changing around the globe. Research on four of the major drivers of global change is unevenly distributed across the Earth's biomes. Here, we use a dataset of 638 anthropogenically driven species richness change studies to identify where data gaps exist across the Earth's terrestrial biomes based on land area, future change in drivers, and the impact of drivers on biodiversity, and make recommendations for where future studies should focus their efforts. Across all drivers of change, the temperate broadleaf and mixed forests and the tropical moist broadleaf forests are the best studied. The biome–driver combinations we have identified as most critical in terms of where local‐scale species richness change studies are lacking include the following: land‐use change studies in tropical and temperate coniferous forests, species invasion and nutrient addition studies in the boreal forest, and warming studies in the boreal forest and tropics. Gaining more information on the local‐scale effects of the specific human drivers of change in these biomes will allow for better predictions of how human activity impacts species richness around the globe.     

Community dynamics of nematodes after Larsen ice‐shelf collapse in the eastern Antarctic Peninsula

Free‐living marine nematode communities of the Larsen B embayment at the eastern Antarctic Peninsula were investigated to provide insights on their response and colonization rate after large‐scale ice‐shelf collapse. This study compares published data on the post‐collapse situation from 2007 with new material from 2011, focusing on two locations in the embayment that showed highly divergent communities in 2007 and that are characterized by a difference in timing of ice‐shelf breakup. Data from 2007 exposed a more diverse community at outer station B.South, dominated by the genus Microlaimus. On the contrary, station B.West in the inner part of Larsen B was poor in both numbers of individuals and genera, with dominance of a single Halomonhystera species. Re‐assessment of the situation in 2011 showed that communities at both stations diverged even more, due to a drastic increase in Halomonhystera at B.West compared to relatively little change at B.South. On a broader geographical scale, it seems that B.South gradually starts resembling other Antarctic shelf communities, although the absence of the genus Sabatieria and the high abundance of Microlaimus still set it apart nine years after the main Larsen B collapse. In contrast, thriving of Halomonhystera at B.West further separates its community from other Antarctic shelf areas.     

Spatial metrics effect of forest fragmentation on forest bird abundance and site occupancy probability: the influence of patch size and isolation

The persistence of species taxa within fragmented habitats is dependent on the source–sink metapopulation processes, and forest patch size and isolation are key factors. Unveiling species–patch area and/or species–patch isolation relationships may help provide crucial information for species and landscape management. In this study, relationship between forest patch size and isolation with abundance and occupancy probability of forest-dependent birds was investigated. This study was based within a coastal landscape that faces deleterious human activities such as clearing for agriculture. The study aimed to answer the question of whether the size and extent of isolation of forest patches influence abundance and/or occupancy probability of forest-specialist and generalist birds. Two bird species, namely Tiny Greenbul Phyllastrephus debilis subsp. rabai and Yellow-bellied Greenbul Chlorocichla flaviventris, were used as models. Birds were surveyed using distance sampling methods, and spatial metrics were measured from satellite imagery. Focal forest size and distance between forest patches were the most influential metrics whereby abundance and occupancy probabilities increased with increasing patch size, but were negatively influenced by increasing gaps between patches. These findings provide evidence of the existence of patch size/ isolation–occupancy relationships characterised by higher occupancy rate of large patches and distance-dependent dispersal, which decreased with increasing gaps between patches. Controlling deleterious human activities that reduce forest size should be a priority for the long-term conservation of forest-dependent birds.     

九香虫(椿象)体内可培养细菌的多样性分析

【目的】认识药用昆虫九香虫(Aspongopus chinesis Dallas)成虫体内可培养细菌资源多样性。【方法】运用纯培养法、反转录重复因子扩增(BOXA1R-PCR)分析技术、16S r RNA基因测序和系统发育分析对样品中可培养细菌进行多样性研究,测定了分离菌株的抗菌特性、吲哚乙酸(IAA)含量和产淀粉酶活性等指标。【结果】通过6种不同培养基共分离得到52株菌落特征不同的细菌菌株。基于菌落特征和BOXA1R-PCR图谱选取12株代表菌株用于16S r RNA基因序列测定。16S r RNA基因序列系统发育分析显示,52株菌株分属于芽孢杆菌属(Bacillus)、假单胞菌属(Pseudomonas)、寡养单胞菌属(Stenotrophomonas)和伯克霍尔德氏菌属(Burkholderia)4个属,其中芽孢杆菌属(Bacillus)为优势菌属。分离到的52株细菌有44株(占总分离菌株的84.6%)表现出对供试病原菌具有较好的抑制作用,高达94.2%的分离菌株能产IAA,有43株(占总分离菌株的82.7%)表现出淀粉酶活性。【结论】九香虫内细菌种群较为多样,具有潜在应用价值。