Seston quality controls zebra mussel (Dreissena polymorpha ) energetics in turbid rivers

Feeding processes and energetic balance of zebra mussels were both related to the quantity and quality of natural seston. Filtration rate and pseudofeces production increased while clearance rate remained constant with increasing seston concentration. Ingestion rate, assimilation efficiency, and assimilation rate all increased with increasing food quality, measured as the ratio of organic to inorganic material in the seston. Respiration rate did not change with either food quantity or quality. As a result, scope for growth declined with decreasing food quality, and fell below 0 cal mg⁻¹ h⁻¹ at an organic:inorganic ratio of 0.5. The association between feeding processes and food quality appears related to a breakdown in the ability of zebra mussels to selectively ingest high-quality organic particles when the organic content of the seston is low. Ingestion, assimilation efficiency, assimilation rate and scope for growth were all higher when seston was amended with an addition of a natural assemblage of algae. Food quality may be a better indicator of environmental conditions suitable for growth than food quantity. These results suggest that the conditions of high suspended inorganic sediment concentrations in large turbid rivers represent a difficult growth environment for the zebra mussel. Received: 12 May 1997 / Accepted: 7 July 1998     

Sediment transport in an inland river in North Queensland

Rivers in northern Queensland are ephemeral and carry water mainly as a direct response to heavy rainfall. Sediment is transported downstream with the runoff and sediment deposition may be a major problem in many proposed reservoirs. Hence information about sediment transport, particularly under high flow conditions, is required for planning and design of water storage reservoirs. In this region, bed material samples can be obtained during low flow periods and suspended sediment sampling during floods is possible but only with difficulty. Little reliable data is available.This paper outlines a possible approach to predicting sediment loads in such rivers. Suspended sediment samples have been analysed to give both particulate concentrations and their grain size distributions. The latter have been compared with bed material size distributions, and the concentrations of suspended bed material and wash load components have been estimated.After investigations of a number of methods for predicting bed material transport, those which treat bed load and suspended load independently have been selected. Field data have been used to determine the wash load and the suspended bed material load. The bed load was then computed so that the total sediment load could be determined.This approach has been applied to the Flinders River at Glendower, based on field data obtained by the Queensland Water Resources Commission in 1982/83.     

Impact of clay particles on the cutaneous exchange of oxygen across the chorion of Atlantic salmon eggs

Rates of oxygen consumption for Atlantic salmon Salmo salar embryos approaching hatching were determined. Values were recorded using a 'closed system' experimental set‐up. A magnetic stirrer was used to ensure that zones of oxygen depletion did not develop in the micro‐environment surrounding the respiring eggs. Recorded values of oxygen consumption ranged from 0·0024 to 0·0038 mg O₂ egg⁻¹ h⁻¹, with a mean consumption rate of 0·0032 mg O₂ egg⁻¹ h⁻¹. The values of oxygen consumption were similar to those reported in other studies using a closed system experimental set‐up, however, they were lower than those reported in a study adopting a flow‐through system. The introduction of clay‐sized sediment to the incubation chamber created a thin film (<1 mm) of sediment on the egg surface, and resulted in reduced rates of oxygen consumption. The additional 0·3 g of clay sediment reduced oxygen consumption by an average of 41% and the addition of a further 0·2 g of clay sediment reduced consumption by an average of 98%. Two explanations for the recorded reduction in consumption were proposed: (i) the creation of a low permeability seal around the eggs restricted the availability of oxygen to the incubating embryos and (ii) the clay‐sized fine sediment physically blocked the micro‐pore canals in the egg membrane, thereby restricting oxygen uptake.     

Fine-scale vertical distribution of bacteria in the East Pacific deep-sea sediments determined via 16S rRNA gene T-RFLP and clone library analyses

Although the deep-sea sediments harbor diverse and novel bacteria with important ecological and environmental functions, a comprehensive view of their community characteristics is still lacking, considering the vast area and volume of the deep-sea sedimentary environments. Sediment bacteria vertical distribution and community structure were studied of the E272 site in the East Pacific Ocean with the molecular methods of 16S rRNA gene T-RFLP (terminal restriction fragment length polymorphism) and clone library analyses. Layered distribution of the bacterial assemblages was detected by both methods, indicating that the shallow sediments (40 cm in depth) harbored a diverse and distinct bacterial composition with fine-scale spatial heterogeneity. Substantial bacterial diversity was detected and nine major bacterial lineages were obtained, including Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Nitrospirae, Planctomycetes, Proteobacteria, and the candidate divisions OP8 and TM6. Three subdivisions of the Proteobacteria presented in our libraries, including the α-, γ- and δ-Proteobacteria. Most of our sequences have low similarity with known bacterial 16S rRNA genes, indicating that these sequences may represent as-yet-uncultivated novel bacteria. Most of our sequences were related to the GenBank nearest neighboring sequences retrieved from marine sediments, especially from deep-sea methane seep, gas hydrate or mud volcano environments. Several sequences were related to the sequences recovered from the deep-sea hydrothermal vent or basalt glasses-bearing sediments, indicating that our deep-sea sampling site might be influenced to certain degree by the nearby hydrothermal field of the East Pacific Rise at 13°N. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods

Microbial communities of ancient Mediterranean sapropels, buried sediment layers of high organic matter, were analyzed by most probable number (MPN) approaches. Mineral media containing different carbon sources in sub-millimolar concentrations were used. MPN numbers were elevated in sapropels and at the sediment surface, which mirrored total cell count distributions. Highest MPN counts were obtained with a mixture of different monomeric and polymeric substrates, with amino acids or with long-chain fatty acids as sole carbon sources. These values reached up to 2 x 10(7) cm(-3), representing 3.3% of the total cell count. A total of 98 pure cultures were isolated from the highest positive dilutions of the MPN series, representing the most abundant microorganisms culturable by the methods used. The strains were identified by molecular biological methods and could be grouped into 19 different phylotypes. They belonged to the alpha-, beta-, gamma-, and delta-Proteobacteria, to the Actinobacteria and the Firmicutes. However, about half of the number of isolates was closely related to the genera Photobacterium and Agrobacterium. Regarding the high cultivation success, these organisms can be assumed to be typical sapropel bacteria, representing a substantial part of the culturable indigenous microbial community.     

Sticky bivalves from the Mesozoic: clues to the origin of the anomalodesmatan arenophilic system

Arenophilic glands represent the only molluscan example of multicellular organs solely concerned with adhesion of foreign particles to the external surfaces of an organism. The glands are exclusive to the bivalve clade Anomalodesmata, but do not occur in all component taxa, having been declared absent in a number of families, including Pholadomyidae. This paper records and describes for the first time the arenophilic apparatus of Pholadomya candida G. B. Sowerby I, 1823, and demonstrates that secretion from these glands is at times preserved in the fossil record. In P. candida , arenophilic glands in the middle mantle folds discharge their products on top of the shell as the animal grows, forming radial lines of secretion that comprise a meandering main strand and numerous thin threads projecting in tufts. The arrangement is similar to that of other families, corroborating the hypothesis that the glands are a synapomorphy of crown-group anomalodesmatans. Instances of preserved secretion in fossil Pholadomya , ranging in age almost to the initial appearance of the genus in the Late Triassic, suggest that fossilized arenophilic secretion may aid systematic studies of problematic fossil groups traditionally included in Anomalodesmata.     

南极深海沉积物宏基因组DNA中低温脂肪酶基因的克隆、表达及性质分析

从南极普利兹湾深海900米深的沉积物中提取获得宏基因组DNA,并通过设计引物,从中克隆到全长为948bp的低温脂肪酶(lip3)开放阅读框完整序列,该基因编码一个由315个氨基酸残基组成、预计分子质量为34.557ku酶蛋白(Lip3);氨基酸序列上的GFGNS(GXGXS)和G-N-S-M-G(GXSXG)在许多脂肪酶中有很高的保守性,它们是水解机制所必需的序列,也是丝氨酸水解酶中最保守的序列.构建了lip3基因重组表达载体,并在大肠杆菌中获得表达,采用镍离子亲和层析柱对表达的酶蛋白Lip3进行纯化,得到约35ku蛋白条带,酶学性质的分析表明,该酶的最适作用温度为25℃,在0℃时表现为最高活力的22%,最适pH值为8.0,对热敏感,35℃热处理60min剩余酶活为10%,以硝基苯棕榈酸酯为底物,Lip3的酶促反应常数Km值随着反应温度的升高而升高,是典型的低温酶.     

象山港网箱养殖区沉积物的古菌空间分布

对象山港网箱养殖区及其周边沉积物中古菌群落的空间分布进行研究,应用基于16S rRNA基因的T-RFLP(末端限制性片段多态性分析)技术分析象山港网箱养殖区及其周边不同深度沉积物中古菌的群落结构和多样性,并构建克隆文库进行系统发育学分析。测定沉积物各项理化因子,通过PCA和RDA分析了古菌群落分布及其与环境因子之间的关系。结果表明,泉古菌是港口沉积物中的优势古菌群,占古菌群落的50%以上。网箱养殖区沉积物的古菌群落结构较非养殖区简单,多样性降低。非养殖区古菌群落随深度呈现有规律的变化。营养盐类和pH是造成养殖区域古菌群落结构区别于非养殖区域的主要环境因素。     

Non‐native mangroves support carbon storage,sediment carbon burial,and accretion of coastal ecosystems

Mangrove forests play an important role in climate change adaptation and mitigation by maintaining coastline elevations relative to sea level rise, protecting coastal infrastructure from storm damage, and storing substantial quantities of carbon (C) in live and detrital pools. Determining the efficacy of mangroves in achieving climate goals can be complicated by difficulty in quantifying C inputs (i.e., differentiating newer inputs from younger trees from older residual C pools), and mitigation assessments rarely consider potential offsets to CO₂ storage by methane (CH₄) production in mangrove sediments. The establishment of non‐native Rhizophora mangle along Hawaiian coastlines over the last century offers an opportunity to examine the role mangroves play in climate mitigation and adaptation both globally and locally as novel ecosystems. We quantified total ecosystem C storage, sedimentation, accretion, sediment organic C burial and CH₄ emissions from ~70 year old R. mangle stands and adjacent uninvaded mudflats. Ecosystem C stocks of mangrove stands exceeded mudflats by 434 ± 33 Mg C/ha, and mangrove establishment increased average coastal accretion by 460%. Sediment organic C burial increased 10‐fold (to 4.5 Mg C ha^?1 year^?1), double the global mean for old growth mangrove forests, suggesting that C accumulation from younger trees may occur faster than previously thought, with implications for mangrove restoration. Simulations indicate that increased CH₄ emissions from sediments offset ecosystem CO₂ storage by only 2%–4%, equivalent to 30–60 Mg CO₂‐eq/ha over mangrove lifetime (100 year sustained global warming potential). Results highlight the importance of mangroves as novel systems that can rapidly accumulate C, have a net positive atmospheric greenhouse gas removal effect, and support shoreline accretion rates that outpace current sea level rise. Sequestration potential of novel mangrove forests should be taken into account when considering their removal or management, especially in the context of climate mitigation goals.