Rhythmic oscillations in KaiC1 phosphorylation and ATP/ADP ratio in nitrogen-fixing cyanobacterium Cyanothece sp. ATCC 51142

Cyanobacterial circadian clock composed of the Kai oscillator has been unraveled in the model strain Synechococcus elongatus PCC 7942. Recent studies with nitrogen-fixing Cyanothece sp. ATCC 51142 show rhythmic oscillations in the cellular program even in continuous light albeit with a cycle time of ~11 h. In the present study, we investigate correlation between cellular rhythms, KaiC1 phosphorylation cycle, ATP/ADP ratio, and the redox state of plastoquinone pool in Cyanothece. KaiC1 phosphorylation cycle of Cyanothece was similar to that of Synechococcus under diurnal cycles. However, under continuous light, the cycle time was shorter (11 h), in agreement with physiological and gene expression studies. Interestingly, the ATP/ADP ratio also oscillates with an 11 h period, peaking concomitantly with the respiratory burst. We propose a mathematical model with C/N ratio as a probable signal regulating the clock in continuous light and emphasize the existence of a single timing mechanism regardless of the cycle time.     

裸子植物psbA基因分子进化式样的研究

为阐明裸子植物对陆生生境生态响应的分子机制,以新近的裸子植物分类系统为指导,基于psb A基因编码全序列对4亚纲53种代表植物进行分子进化分析。首先,依据"放松分子钟"模型重建裸子植物在时间尺度下系统发育关系;其次,采用6个模型(MEC/JTT、MEC/cp REV、M5、M7、M8、M8a)估测氨基酸位点ω值,并对各模型结果进行统计检测;随后,利用Bootstrap方法检PSBA蛋白内部氨基酸位点的共进化动态。结果表明,系统树提示的物种分化历程支持前期分类结果;光合系统反应中心核心PSBA蛋白有3个氨基酸位点(13、19和243)曾经受正选择压力;PSBA蛋白内部有多对氨基酸位点间构成了共进化网络。因此,psb A基因编码序列具有作为描绘裸子植物系统发育关系标记的潜力,PSBA蛋白部分位点经历了适应性进化,通过位点间共进化网络协同作用方式辅助裸子植物响应陆生生境。     

Responses of the distribution pattern of Quercus chenii to climate change following the Last Glacial Maximum

Aims Quercus chenii is a representative species of the flora in East China, with high ecological and economic values. Here, we aim to simulate the changes in the distribution pattern of this tree species following the Last Glacial Maximum (LGM) and to explore how climatic factors constrain the potential distribution, so as to provide scientific basis for protection and management of the germplasm resources in Q. chenii.
Methods Based on 55 presence point records and data on eight environmental variables, we simulated the potential distribution of Q. chenii during the Last Glacial Maximum, mid-Holocene, present and the year 2070 (the scenario of greenhouse gas emission is Representative Concentration Pathway 8.5) with MaxEnt model. The novel climate area and main factors influencing the changes in distribution pattern were evaluated by multivariate environmental similarity surface analysis and the most dissimilar variable analysis. The importance of environmental variables was evaluated by percent contribution, permutation importance and Jackknife test. Response curves were used to estimate the suitable value range of each variable.
Important findings The accuracy of MaxEnt model is very high, as indicated by the value of the area under the receiver operator characteristic curve of 0.9869 ± 0.0045. The highly suitable region for the present distribution covers southern Anhui, western Zhejiang, northeastern Jiangxi and eastern Hubei. The main factors affecting the potential distribution of Q. chenii are temperature and precipitation, with the former being more important. Mean temperature of the driest quarter is likely the main factor restricting Q. chenii growing in the north. During the LGM, the East China Sea Shelf occurs as the highly suitable region for the distribution of Q. chenii. In the mid-Holocene, the outline of the suitable area for the distribution of Q. chenii is similar to the present. The potential distribution region will likely move northward and experience an area expansion under the climate condition in 2070. At that time, climate anomaly will also be most severe compared to the LGM, mid-Holocene and present. Temperature seasonality and precipitation seasonality may be the main climatic factors promoting changes in the distribution pattern of Q. chenii.     

基于Farquhar改进模型的北亚热带森林常见树种光合限速因子研究

为探讨北亚热带地区植物的光合限速因子,利用改进的Farquhar模型研究了9种常见树种的光合特性。结果表明,与常绿树种相比,落叶树种枫香(Liquidambar formosana)和乌桕(Sapium sebiferum)的最大净光合速率(Pmax)和表观羧化速率(CE)较大;核酮糖-1,5-二磷酸羧化酶/加氧酶(Rubisco)活性是他们的光合限速因子。地带性树种青冈栎(Cyclobalanopsis glauca)的Pmax和CE在常绿木本植物中最大,青冈较强的光合能力可能是来源于Vcmax和TPU。耐阴灌木八角金盘(Fatsia japonica)和美人茶(Camellia uraku)的Pmax较小,其光合限速因子是叶肉细胞导度和呼吸速率。低光照下植物较低的光合能力是由于较小的叶肉导度(gm)和TPU导致的;有效光合辐射短时间的降低使得物种的gm平均减少了60.14%。因此,不同树种在不同环境条件下的光合限速因子不尽相同,应根据树种不同的光合生理特性来合理布局,科学育林。     

Spectral feature differences between shrub and grass communities and shrub coverage retrieval in shrub-encroached grassland in Xianghuang Banner,Nei Mongol,China北大核心CSCD

Aims: Shrub-encroached grassland has become an important vegetation type in China's arid and semi-arid region. Our study objective is to explore the spectral features of shrub and grass communities, as well as their empirical relationships with shrub coverage. The quantitative estimation of shrub cover based on medium-resolution Landsat satellite imagery provides the practical basis for long term retrieval of large areas of shrub expansion in the grassland region. Methods: Linear models and Multiple Endmember Spectral Analysis Model (MESMA) based on medium resolution Landsat satellite imagery were developed to quantify the shrub coverage in a shrub-encroached grassland region in Xianghuang Banner, Nei Mongol using the spectral features and their seasonal differences between the shrub and grass communities. Important findings: Compared to Leymus chinensis and Stipa krylovii dominated grass communities, Caragana microphylla community had a higher normalized difference vegetation index (NDVI), modified red edge normalized difference vegetation index (mNDVI705), and red edge slope. The red edge position of C. microphylla community shifted to longer wavelengths. The average and the maximum shrub coverage was 13% and 25%, respectively, in the shrub-encroached grassland based on both models. The correlation coefficient of determination (R2) and root mean square error (RMSE) of the linear model was 0.31 and 0.05, respectively. We found that the linear model based on seasonal differences of shrub and grass community was more suitable for retrieving shrub coverage in the study area from medium resolution imagery than the MESMA model that is based on mid-summer images.     

Mechanical properties of mosquito nets in the context of hernia repair

The paper deals with issue of applying mosquito nets as implants in hernia repair, which have already been used in resource-poor developing countries. Uniaxial tensile tests have been conducted on polyester mosquito meshes in two orthogonal directions. Non-linear elastic constitutive laws parameters have been identified to be applied in dense net material models. Mechanical performance of tested mosquito nets has been compared with properties of commercial implants used in treatment of hernia and with properties of human tissue. This study contributes to mechanical knowledge of hernia repair issue by investigation of cheaper alternative to commercial implants.     

Numerical investigations of rib fracture failure models in different dynamic loading conditions

Rib fracture is one of the most common thoracic injuries in vehicle traffic accidents that can result in fatalities associated with seriously injured internal organs. A failure model is critical when modelling rib fracture to predict such injuries. Different rib failure models have been proposed in prediction of thorax injuries. However, the biofidelity of the fracture failure models when varying the loading conditions and the effects of a rib fracture failure model on prediction of thoracic injuries have been studied only to a limited extent. Therefore, this study aimed to investigate the effects of three rib failure models on prediction of thoracic injuries using a previously validated finite element model of the human thorax. The performance and biofidelity of each rib failure model were first evaluated by modelling rib responses to different loading conditions in two experimental configurations: (1) the three-point bending on the specimen taken from rib and (2) the anterior–posterior dynamic loading to an entire bony part of the rib. Furthermore, the simulation of the rib failure behaviour in the frontal impact to an entire thorax was conducted at varying velocities and the effects of the failure models were analysed with respect to the severity of rib cage damages. Simulation results demonstrated that the responses of the thorax model are similar to the general trends of the rib fracture responses reported in the experimental literature. However, they also indicated that the accuracy of the rib fracture prediction using a given failure model varies for different loading conditions.     

Intervertebral reaction force prediction using an enhanced assembly of OpenSim models

OpenSim offers a valuable approach to investigating otherwise difficult to assess yet important biomechanical parameters such as joint reaction forces. Although the range of available models in the public repository is continually increasing, there currently exists no OpenSim model for the computation of intervertebral joint reactions during flexion and lifting tasks. The current work combines and improves elements of existing models to develop an enhanced model of the upper body and lumbar spine. Models of the upper body with extremities, neck and head were combined with an improved version of a lumbar spine from the model repository. Translational motion was enabled for each lumbar vertebrae with six controllable degrees of freedom. Motion segment stiffness was implemented at lumbar levels and mass properties were assigned throughout the model. Moreover, body coordinate frames of the spine were modified to allow straightforward variation of sagittal alignment and to simplify interpretation of results. Evaluation of model predictions for level L1–L2, L3–L4 and L4–L5 in various postures of forward flexion and moderate lifting (8 kg) revealed an agreement within 10% to experimental studies and model-based computational analyses. However, in an extended posture or during lifting of heavier loads (20 kg), computed joint reactions differed substantially from reported in vivo measures using instrumented implants. We conclude that agreement between the model and available experimental data was good in view of limitations of both the model and the validation datasets. The presented model is useful in that it permits computation of realistic lumbar spine joint reaction forces during flexion and moderate lifting tasks. The model and corresponding documentation are now available in the online OpenSim repository.     

Computer simulation of orthodontic tooth movement using CT image-based voxel finite element models with the level set method

Orthodontic tooth movement (OTM) is an adaptive biomechanical response of dentoalveolar components to orthodontic forces, in which remodeling of the alveolar bone occurs in response to changes in the surrounding mechanical environment. In this study, we developed a framework for OTM simulation by combining an image-based voxel finite element method, with a surface-tracking level set method using three-dimensional computer models. For a case study to demonstrate its capability of expressing clinical tooth movement, we observed displacement and rotation of the tooth under three types of force conditions. The simulation results demonstrate that the proposed simulation method has the potential to predict clinical OTM.