Allocordyceps baltica gen. et sp. nov. (Hypocreales: Clavicipitaceae), an ancient fungal parasite of an ant in Baltic amber

An ancient fungal parasite of a Camponotus ant (Formicidae: Hymenoptera) in Baltic amber is described as Allocordyceps baltica gen. et sp. nov. (Hypocreales: Clavicipitaceae). The new genus is characterized by an orange, stalked, cup-shaped ascoma with partially immersed perithecia that emerges from the rectum of the ant, two separate stromata with septate mycelium that emerge from the base of the neck and the abdomen of the ant, respectively, and free-standing putative perithecia bearing putative asci with putative multicellular ascospores fragmented into one-celled partspores. This oldest known fossil fungus of an ant could represent a precursor of the genus Ophiocordyceps, which at present is the only fungal lineage parasitizing ants of the genus Camponotus. The fossil shows unique morphological features that existed in the Hypocreales some 35–55 MYA.     

The American Paddlefish Genome Provides Novel Insights into Chromosomal Evolution and Bone Mineralization in Early Vertebrates

Sturgeons and paddlefishes (Acipenseriformes) occupy the basal position of ray-finned fishes, although they have cartilaginous skeletons as in Chondrichthyes. This evolutionary status and their morphological specializations make them a research focus, but their complex genomes (polyploidy and the presence of microchromosomes) bring obstacles and challenges to molecular studies. Here, we generated the first high-quality genome assembly of the American paddlefish (Polyodon spathula) at a chromosome level. Comparative genomic analyses revealed a recent species-specific whole-genome duplication event, and extensive chromosomal changes, including head-to-head fusions of pairs of intact, large ancestral chromosomes within the paddlefish. We also provide an overview of the paddlefish SCPP (secretory calcium-binding phosphoprotein) repertoire that is responsible for tissue mineralization, demonstrating that the earliest flourishing of SCPP members occurred at least before the split between Acipenseriformes and teleosts. In summary, this genome assembly provides a genetic resource for understanding chromosomal evolution in polyploid nonteleost fishes and bone mineralization in early vertebrates.     

Migration and distribution of adult hatchery reared Yangtze sturgeons (Acipenser dabryanus) after releasing in the upper Yangtze River and its implications for stock enhancement

The Yangtze sturgeon (Acipenser dabryanus) is a most important aquatic animal at the national level. Influenced by human activities such as dam constructions and overfishing, its natural population in the wild has almost disappeared. Since 2000, its natural reproduction has not been detected. In May 2018, in the Yibin reaches of the upper Yangtze River, 40 adult hatchery reared Yangtze sturgeons with their gonads at or above stage III, body length ranging from 92 to 146 cm were ultrasonically labeled and released. Results of fixed station and mobile surveys showed that only one individual did not receive ultrasonic signals. Our study indicated that: (a) In terms of longitudinal migration along the river, most individuals were mainly distributed in the main section of the downstream Jinsha River below Xiangjiaba Dam after releasing, except one individual conducting a relatively long-distance migration; (b) Compared with the released juvenile fish which performed a descending migration, adult Yangtze sturgeons preferred an anadromous migration and a settled life in the wild; (c) The habitat water depth of the released Yangtze sturgeons ranged from 0.61m to 27.74 m with the mean value of 8.65 ± 3.89m (mean ± standard deviation). There was a significant difference in daytime and nighttime habitat water depths (p < .01), and the average habitat water depth in daytime was significantly lower than that at night. In this study, ultrasonic telemetry was used to quantitatively assess the migration and spatial distribution of the released adult Yangtze sturgeons for the first time. Our results would provide a scientific basis for the subsequent reconstruction and restoration of the wild populations and future stock enhancement.     

The effect of sub-lethal exposure to copper and the time course of recovery in clean water on biochemical changes in juvenile fish (Acipenser persicus)

This study reports the 96-h LC₅₀ value and tissue copper (Cu) levels and biochemical changes in juvenile fish (Acipenser persicus) exposed to 0.026?mg/l ambient Cu for 1, 7 and 14?days. It then examined the recovery of the same parameters after placing the juvenile fish in clean water for a further period of 28?days. The intestine, kidney and gill Cu levels, plasma glucose, total protein, triglyceride, cortisol, triiodothyronine and thyroxine concentrations, liver protein contents, liver catalase, superoxide dismutase (SOD) and glutathione S-transferase activities were studied. The 96-h LC₅₀ value of Cu was 0.502?mg/l for juvenile A. persicus. The results indicate that Cu exposure produced significant accumulations of Cu in gills and kidney over the treatment time. Sublethal dose of Cu resulted in a short-term increase in plasma glucose, total protein and cortisol levels that decreased with time. After the 28-day recovery phase, there were significant differences in kidney Cu levels and triglyceride concentrations as well as SOD activities between recovery fish treatments and their control groups on day 42. The 28-day recovery phase caused significant decreases in total protein levels and SOD activities of Cu-exposed fish on day 42 compared to day 14. The results suggest that 28?days are insufficient for complete recovery to Cu exposure by juveniles and a longer period would be required for full recovery. Moreover, the study showed that the recovery phase following Cu exposure could change biochemical parameters to levels that are not close to those seen during exposure or control levels.     

Distribution of Cyprideis torosa (Ostracoda) in Quaternary Athalassic Sediments in Germany and its Application for Palaeoecological Reconstructions

Cyprideis torosa (Jones , 1850) is a very common brackish water ostracod of the German coasts, but, despite empty valves are found occasionally in surface sediments of some modern inland waters, C. torosa could not be found living in modern athalassic waters of Germany so far. During interglacial periods, including the Holocene, however, fossils of this species are quite common in Central Germany, at a distance of more than 300 km away from the coasts of the Baltic and North Seas. All 31 Quaternary localities with C. torosa known so far from Germany are documented. C. torosa is an indicator for brackish waters and widely used as index‐fossil in palaeosalinity reconstructions relying on water chemistry bound morphological changes (nodes, sieve‐pores). The comparisons imply a general underestimation of palaeosalinity in oligo‐ to mesohaline athalassic waters if using nodes and sieve‐pores of C. torosa as proxy. A water chemistry (ionic composition) driven morphological response is assumed instead one by salinity only. Palaeosalinity estimations for athalassic waters, relying on morphological variability alone, should therefore be used with caution. Palaeosalinity trends, however, can be detected. Distinguishing thalassic and athalassic sediments with C. torosa is possible by using the associated ostracod fauna as a discriminator. Regarding the ecology and distribution of C. torosa, permanent, brackish, and shallow water bodies under relatively warm conditions are required for its settlement. The source of the salt are brines originating from Zechsteinian or Triassic underground evaporites. Warm and relatively dry climates could enhance the process for such water bodies of becoming salty, a situation present in Holocene Central Germany. The occurrence of C. torosa can therefore be used for palaeoclimatological studies. The most probable migration path of this ostracod species to athalassic waters is by avian transport. (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Noding of Cyprideis torosa valves (Ostracoda) – a proxy for salinity? New data from field observations and a long‐term microcosm experiment

Cyprideis torosa (Jones , 1850) (Ostracoda, Crustacea) is one of the most common marginal marine ostracod species in the Northern hemisphere. We investigate the relationship between variable noding of its valves and salinity as well as Ca²⁺ concentration in the ambient water, analysing populations from an in vitro experiment and field data from the southern Baltic Sea coast. There is a clear negative linear correlation between the proportion of noded individuals from our microcosms and salinity. Deficiency of Ca²⁺ causes heavier noding in laboratory cultures. The same effect can be seen in the field, however, the increase of noded individuals with falling salinity appears to be stepped, not linear. This pattern probably reflects the ability of the animals to wait some time until better salinity conditions occur within the highly variable conditions of estuaries and lagoons. At the southern Baltic Sea coast, proportions of more than 20% noded valves within a C. torosa population indicates salinities of up to 2 psu, up to 10% noded valves indicate salinities between 2 and 7 psu, and the lack of noded valves salinities > 7 psu. Stable salinity conditions as in the studied microcosms cause a shift of these salinity limits to 5 and 14 psu approximately but in a linear relationship between salinity and proportion of noded individuals. Hence, athalassic populations from more stable water bodies should be used for continuous and more detailed salinity trend reconstructions. Deficiency of Ca²⁺ (approximately < 120 mg/l) effects up to about 20% more noded individuals than in water with same salinity but with higher Ca²⁺ concentrations. The reproduction rates within the microcosms indicate a salinity optimum of C. torosa eggs of 8 psu whereas the optimum of the adults seems to be at least 14 psu (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Spatial subsidies in spider diets vary with shoreline structure: Complementary evidence from molecular diet analysis and stable isotopes

Inflow of matter and organisms may strongly affect the local density and diversity of organisms. This effect is particularly evident on shores where organisms with aquatic larval stages enter the terrestrial food web. The identities of such trophic links are not easily estimated as spiders, a dominant group of shoreline predator, have external digestion. We compared trophic links and the prey diversity of spiders on different shore types along the Baltic Sea: on open shores and on shores with a reed belt bordering the water. A priori, we hypothesized that the physical structure of the shoreline reduces the flow between ecosystem and the subsidies across the sea–land interface. To circumvent the lack of morphologically detectable remains of spider prey, we used a combination of stable isotope and molecular gut content analyses. The two tools used for diet analysis revealed complementary information on spider diets. The stable isotope analysis indicated that spiders on open shores had a marine signal of carbon isotopes, while spiders on reedy shores had a terrestrial signal. The molecular analysis revealed a diverse array of dipteran and lepidopteran prey, where spiders on open and reedy shores shared a similar diet with a comparable proportion of chironomids, the larvae of which live in the marine system. Comparing the methods suggests that differences in isotope composition of the two spider groups occurred because of differences in the chironomid diets: as larvae, chironomids of reedy shores likely fed on terrestrial detritus and acquired a terrestrial isotope signature, while chironomids of open shores utilized an algal diet and acquired a marine isotope signature. Our results illustrate how different methods of diet reconstruction may shed light on complementary aspects of nutrient transfer. Overall, they reveal that reed belts can reduce connectivity between habitats, but also function as a source of food for predators.     

Phytoplankton,physical and chemical microscale variations in three brackish rock pools

Variations at the microscale in phytoplankton distribution with respect to physical and chemical variables in three brackish rock pools of different depth, size and exposure were studied during the growth season. Three hypotheses were made about the microspatial characteristics of the rock pool habitat: (i) there are distinct microscale variations in physical and chemical variables, (ii) the microscale distribution of phytoplankton is related to characteristic physical and/or chemical variables, and (iii) microscale variations are more pronounced in deep rock pools. Variations were studied at a 10 cm scale by close interval siphon sampling. Physical and chemical variations were small irrespective of rock pool. Prevailing weather, as well as the similar round basin shape of the pools contributed to the similarities. Variations in phytoplankton microscale distributions were clear and consistent throughout the study period, and less variable in the deepest pool compared to the shallower ones. The distribution of dominant phytoplankton species correlated with microscale variations in temperature, dissolved oxygen and pH, often during seasonal minima or maxima. The microscale correlations implied that short reaction times of phytoplankton enabled them to exploit, or be influenced by, brief, local variations. The results demonstrated the importance of studies at fine scales to disentangle processes even in shallow weather‐influenced ecosystems.     

Semi-automated classification method addressing marine strategy framework directive (MSFD) zooplankton indicators

Semi-automated classification of zooplankton allows increasing the number of processed samples cost-effectively, albeit with a relatively limited taxonomic accuracy, partly because cost-efficiency trade-off but also due to technological limitations that might be overcome in the future. The present study tests the suitability of using a cost-efficient semi-automated classification methodology as a tool to assess zooplankton indicators for the purpose of the EU Marine Strategy Framework Directive, using samples collected in the Baltic Sea. In this brackish ecosystem the zooplankton individuals are small-bodied and therefore their identification with semi-automated classification is challenging. However, results show that semi-automated zooplankton classification provides a taxonomic classification level that is sufficient for a number of proposed indicators. This analysis also points out weakness of the methodology and proposes already proved solutions based on the latest development of these methodologies applied to zooplankton classification. As proved in the Baltic Sea, complementing manual zooplankton analyses with the semi-automated classification offers new advantages for marine environment assessment.