Apolipoprotein E gene polymorphism and dyslipidaemia in adult Asian Indians: A population based study from Calcutta, India

AIM:

The study was aimed to determine the association of Apolipoprotein E (apo E) gene polymorphisms on lipid levels in Asian Indian population.

METHODS:

A total of 350 (184 males and 166 females) adult (30 years and above) Asian Indians of Calcutta and suburb participated in the study. Anthropometric measures, lipids profiles, and blood glucose measures were collected. Out of 350 subjects, a sample of 70 individuals was selected randomly for genotyping after adjusting for age and sex. The apo E gene polymorphisms were determined by agarose gel electrophoresis.

RESULTS:

The apo E polymorphism showed significant association with dyslipidaemia (P=0.0135) with ε3/4 combination has had the highest occurrence of dyslipidaemia and metabolic syndrome (MS) followed by ε4/4 <ε3/3 <ε2/4 <ε2/3 in decreasing order.

CONCLUSIONS:

The ε4 allele of apo E gene independent of other risk factors is associated with dyslipidaemia in particular with low HDLc and high TC: HDLc ratio.     

Summer monsoon precipitation variations in central China over the past 750 years derived from a high-resolution absolute-dated stalagmite

A 2–3-year resolution record of stalagmite oxygen isotope variations from the south flank of the Qinling Mountains, central China, has revealed the Asian summer monsoon (ASM) precipitation variations in the investigated area over the past 750 years. The summer monsoon precipitation gradually increased since 1249 AD, reaching its highest values in the period 1535–1685 AD, and then decreased with substantial decadal- to centennial-scale fluctuations. The monsoon precipitation increased again between 1920 and 1970 AD. Three intervals of high monsoon precipitation were identified: 1535–1685 AD, 1755–1835 AD, and 1920–1970 AD. Three intervals of low precipitation were inferred in 1249–1325 AD, 1390–1420 AD, and 1890–1915 AD. The δ¹⁸O composition and lithological features of the stalagmite coincidently indicate a wetter climate during the Little Ice Age (LIA), which is also confirmed by climate records from Chinese historical documents within this area. A comparison with other high-resolution speleothem records indicates regional differences in monsoon precipitation variability from the south to the north of central China in the last 750 years on decadal- to centennial-scale. Power spectrum analysis of the δ¹⁸O record shows significant 117.8-, 34.6-, 14-, 10.3-, and ~ 6-year periodicities. These periodicities are widely observed in the climate records from ASM-controlled areas of China and are consistent with the Gleissburg periodicity, Brϋckner periodicity, sunspot periodicity of solar activity, and El Nińo–Southern Oscillation (ENSO) periodicity. These correlations suggest that both solar activity and ENSO periodicity may have had important influences on ASM precipitation in China over the past 750 years.     

Diet overlap among two Asian carp and three native fishes in backwater lakes on the Illinois and Mississippi rivers

Bighead and silver carp are well established in the Mississippi River basin following their accidental introduction in the 1980s. Referred to collectively as Asian carp, these species are filter feeders consuming phytoplankton and zooplankton. We examined diet overlap and electivity of Asian carp and three native filter feeding fishes, bigmouth buffalo, gizzard shad, and paddlefish, in backwater lakes of the Illinois and Mississippi rivers. Rotifers, Keratella spp., Brachionus spp., and Trichocerca spp., were the most common prey items consumed by Asian carp and gizzard shad, whereas crustacean zooplankton were the preferred prey of paddlefish. Bigmouth buffalo diet was broad, including both rotifers and crustacean zooplankton. Dietary overlap with Asian carp was greatest for gizzard shad followed by bigmouth buffalo, but we found little diet overlap for paddlefish. Diet similarity based on taxonomy correlated strongly with diet similarity based on size suggesting filtration efficiency influenced the overlap patterns we observed. Although rotifers were the most common prey item consumed by both bighead and silver carp, we found a negative relation between silver carp CPUE and cladoceran density. The competitive effect of Asian carp on native fishes may be forestalled because of the high productivity of Illinois and Mississippi river habitats, yet the potential for negative consequences of Asian carp in less productive ecosystems, including Lake Michigan, should not be underestimated.     

Spatial distribution of aquatic birds in Anavilundawa Ramsar wetland sanctuary in Sri Lanka

Biotic and abiotic factors that influence the avian distribution in a dry zone wetland was investigated by studying the distribution of Asian Openbill (Anastomus oscitans), Cotton Pygmy-goose (Nettapus coromandelianus) and Pheasant-tailed Jacana (Hydrophasianus chirurgus) in Anavilundawa Ramsar sanctuary in Sri Lanka in 2006. Their distribution was recorded in Anavilundawa, Suruwila and Maiyawa reservoirs, their catchments and respective paddy fields, through line transects. The floral cover of surface water was recorded by floating quadrates. Water lily (Nymphea spp.) was the dominant flora in Anavilundawa reservoir, invasive water hyacinth (Eichhornia crassipes) in Suruwila reservoir and a native lotus (Nelumbo nucifera) in Maiyawa reservoir, respectively. Anavilundawa area had a higher distribution of birds than in the other two areas. Among the three species observed, Asian Openbill distribution was mainly restricted to Anavilundawa whereas Pheasant-tailed Jacana was present in all three areas. Nesting of Asian Openbill occurred only in Anavilundawa while nesting of Pheasant-tailed Jacana was only observed in Maiyawa. Among the three species recorded, Cotton Pygmy-goose numbers were the least. Asian Openbill preferred dead trees and trees with no leaves for nesting and perching over live trees. It is concluded that the spread of invasives such as Water hyacinth and Salvinia (Salvinia molesta) forming mats over surface water have reduced the abundance of habitat specialists like Cotton Pygmy-goose.     

Entomopathogenic fungi recorded from the harlequin ladybird, Harmonia axyridis

Entomopathogenic fungi were recorded from field samples of the harlequin ladybird Harmonia axyridis, an invasive coccinellid that has recently arrived in Denmark. Larvae, pupae and adults were found to be infected by Isaria farinosa, Beauveria bassiana and species of Lecanicillium. This is the first record of entomopathogenic fungi infecting larvae and pupae. Winter mortality due to fungal infection reached 17.9% in adults collected at one location. The larval stage was most susceptible to fungal infection, as confirmed through bioassay with I. farinosa.     

Their Day in the Sun: molecular phylogenetics and origin of photosymbiosis in the 'other' group of photosymbiotic marine bivalves (Cardiidae: Fraginae)

The subfamily Fraginae (Cardiidae) is a morphologically diverse group of small-bodied marine clams inhabiting shallow seas worldwide. Like the exclusively photosymbiotic giant clams (Cardiidae: Tridacninae), some fragines are known to host zooxanthellae photosymbionts. However, surveys to widely determine photosymbiotic status and the lack of a comprehensive phylogeny have hindered attempts to track the evolution of photosymbiosis in the group. Worldwide sampling of all fragine genera and subgenera with phylogenetic reconstructions based on four gene regions [nuclear (28S) and mtDNA (16S, cytochrome oxidase I, cytochrome b )] does not support a monophyletic Fraginae. Sampled taxa form four restructured clades: (1) the ' Fragum ' group, (2) the ' Trigoniocardia ' and ' Ctenocardia ' groups, (3) the ' Parvicardium ' group and (4) the ' Papillicardium ' group. Maximum likelihood analyses strongly support a clade of European cardiids uniting species from three subfamilies. Live examination of > 50% of species reveals that less than half of derived genera and subgenera host photosymbionts, supporting a single and relatively late origin of photosymbiosis in the Fraginae. The evolutionary implications for a small and little modified earliest diverging photosymbiotic lineage are discussed.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 448–465.     

Molecular characterization of beta-tubulin from Phakopsora pachyrhizi, the causal agent of Asian soybean rust

β-tubulins are structural components of microtubules and the targets of benzimidazole fungicides used to control many diseases of agricultural importance. Intron polymorphisms in the intron-rich genes of these proteins have been used in phylogeographic investigations of phytopathogenic fungi. In this work, we sequenced 2764 nucleotides of the β-tubulin gene (Pp tubB) in samples of Phakopsora pachyrhizi collected from seven soybean fields in Brazil. Pp tubB contained an open reading frame of 1341 nucleotides, including nine exons and eight introns. Exon length varied from 14 to 880 nucleotides, whereas intron length varied from 76 to 102 nucleotides. The presence of only four polymorphic sites limited the usefulness of Pp tubB for phylogeographic studies in P. pachyrhizi. The gene structures of Pp tubB and orthologous β-tubulin genes of Melampsora lini and Uromyces viciae-fabae were highly conserved. The amino acid substitutions in β-tubulin proteins associated with the onset of benzimidazole resistance in model organisms, especially at His (6) , Glu (198) and Phe (200) , were absent from the predicted sequence of the P. pachyrhizi β-tubulin protein.     

Growing-season precipitation since 1872 in the coastal area of subtropical southeast China reconstructed from tree rings and its relationship with the East Asian summer monsoon system

Tree rings from temperate zones of the world have provided abundant palaeo- ecological and paleo-hydroclimatic information. However, tree rings from subtropical to tropical regions remain relatively scarce, which greatly limit our fully understanding about the climate change issues. In the present work, tree-ring-width (TRW) measurements of Masson pine from Fujian province, the coastal area of subtropical southeast China were successfully crossdated and a TRW STD chronology was developed from 1854 to 2012. Significantly positive correlation was identified between the tree rings and April–November total precipitation (r = 0.71, p < 0.01). The reconstructed April–November precipitation exhibited two comparatively wet (1876–1886 and 1957–1962) and one comparatively dry (1986–2004) periods. An evident drying trend since 1959 was seen and it was mitigated after 1993. Most of the extreme low-precipitation years in the reconstruction were supported by the historical records. As revealed by the spatial correlation patterns, our precipitation reconstruction was also consistent with other hydroclimatic records along the coastal areas of southeast China, proving its ability to capture the large-scale hydrological signal in southeast China (mainly refers to the south of the middle-lower reaches of Yangtze River). The reconstructed precipitation showed significant correlation with the East Asian summer Monsoon (EASM) index. Moreover, it also indicated simultaneous variation with the monsoon precipitation in North China on a decadal scale, implying that growing season precipitation variations in both regions were influenced by the EASM strength. This work highlights the potential of using tree-ring width to reconstruct precipitation in subtropical southeast China, while the relevant issues about precipitation variation in this region is far from resolved.     

尚勇保护区亚洲象种群数量动态、种群结构及季节分布格局

在2006 年6 月至2007 年9 月,通过种群个体识别、社区监测网络、样线调查和村寨访问等方法对尚勇保护区亚洲象的种群动态和季节性分布格局进行研究。结果显示:目前在尚勇保护区的亚洲象种群数量约为68头;拍摄到亚洲象共计347 头次,通过个体识别方法识别出亚洲象53 头,其中幼体、青少年体、亚成体和成体数量及所占比例分别为:3 (5.66%)、11 (20.75% )、15 (28.30% )、24 (45.28% ),在成体中雄性只有两头,成年象的雌雄性比为11∶ 1,高于已知国内外的其他区域。从1992 年至2007 年10 月,至少有32 头亚洲象死亡,其中确认死于猎杀的有7 头,保护区的核心区野牛河、金宝河一带是盗猎亚洲象最严重的地区。严重的盗猎和不断减少的栖息地对当地的亚洲象种群产生了巨大的威胁,也加剧了当地的人象冲突。在雨季和旱季,亚洲象各有五个核心活动区域,食物是导致雨季和旱季分布格局不同的主要因素。