Dietary variations of predaceous caddisfly larvae (Trichoptera: Rhyacophilidae,Polycentropodidae and Arctopsychidae) from British Columbian streams

The diets of larval Rhyacophilidae (Rhyacophila inculta), Polycentropodidae (Polycentropus variegatus) and Arctopsychidae (Parapsyche almota and P. elsis) from five streams in the University of British Columbia Research Forest, British Columbia (Canada), are recorded and related to feeding mode/constructional activities and prey representation in the habitat. Particular attention was paid to the extent of dietary overlap and the degree of intraspecific dietary variations between streams. An overall similarity of the diets of the study species was notable and all commonly consumed chironomid (Diptera) larvae, Simulium (Diptera) and Zapada (Plecoptera), although there was interspecific variation in the relative importance of these items. Polycentropus variegatus and Parapsyche spp. ate Baetis and Paraleptophlebia, the latter predators also consuming Hydrachnellae (Acarina). Other prey were generally of minor importance and consequently interspecific dietary overlaps were high. Differences in the range of prey consumed by predaceous Trichoptera were apparent. Free-foraging R. inculta which selectively consumed sedentary simuliid larvae had the narrowest niche breadth. Parapsyche spp. and Polycentropus variegatus foreguts generally contained an over-representation of chironomid larvae compared to their proportionate occurrence in the benthos, and these caddisflies exhibited high niche overlap. The relative importance of chironomids as food for Parapsyche spp. and Polycentropus variegatus is attributed to prey behaviour, i.e. drift, and poorly developed escape responses when they are caught on the predator's net.     

EFFECT OF TREE CANOPY REMOVAL BY GYPSY MOTH LARVAE ON THE MACROALGAE OF A RHODE ISLAND HEADWATER STREAM1

A spring-fed, headwater stream in central Rhode Island was examined during the period from June to October, 1979 to 1982. In the first two summers, a dense riparian canopy reduced the light penetration at the stream surface to a range of 5 to 18% of incident radiation. The lotic macroalgal community during this period was limited to 1 to 4 species covering < 1 to 35% of the stream bottom. However, in June and July, 1981, the surrounding leaf canopy was removed by a massive gypsy moth larval outbreak. Light penetration to the stream during this summer increased to 73% by early July, thereby resulting in a rise in water temperatures by 3.7°C. Even though there was a partial regrowth of leaves in late July and August of 1981, macroalgal cover values continued to rise to an early August peak of 80%. During the third summer, 88% of the macroalgal abundance could be attributed to illumination and water temperature. The filamentous diatom Funotia pectinalis ( O.F. Müll.) Rabh. was the predominant species in the midsummer of all four years, accounting for at least 60% of the total cover. In 1981. an important taxon was the desmid Hyalotheca dissiliens (S. Smith) Bréb., a species which was not seen in other years. A less severe gypsy moth defoliation occurred in 1982 but did not produce significant differences in light, temperature or macroalgal cover from 1979 and 1980. The results indicate that light and temperature can be limiting during the summer in spring-fed, headwater streams and that seed populations of some species are present in undetect-able levels during these periods of suboptimal growth conditions. In addition, it appears that stream macroalgal communities can be quite resilient, recovering rapidly following a major perturbation .     

The influence of different spatial‐scale variables on caddisfly assemblages in Flemish lowland streams

1. Patterns in species assemblages are the result of the combined influence of processes acting on different spatial scales. Various studies describe the distribution of macroinvertebrate communities and their relationship with environmental factors at different geographical scales, but only a few of these studies concentrate on Western European lowlands. 2. Using Flanders as representative for the densely populated Western‐European lowlands, the specific aims of this study are: (i) to identify the different trichopteran species assemblages and to characterise them biologically using indicator species; (ii) to determine which environmental gradients most influence the observed species assemblages; and (iii) to analyse the relative importance of different spatial scale variables in constraining the Trichoptera distributions. 3. Assessment of the main environmental gradients suggested that the absence of Trichoptera from certain locations was mainly due to elevated nutrient concentrations and lower oxygen contents, confirming their sensitivity to anthropogenic disturbance. 4. Five Trichoptera species assemblages were distinguished based on Bray–Curtis dissimilarity coefficients. These assemblages did not differ significantly in species richness, but a shift in stream zonation preference was observed. In the ordination analysis 11 variables that were selected using a stepwise model building function manifested themselves as upstream–downstream and size‐related gradients. The Trichoptera assemblages in lowland streams thus appear to follow a longitudinal succession pattern that corresponds with the species‐specific preferences. 5. Partitioning the variance over the different spatial scales indicated that the reach‐scale variables were far more important in explaining the variation in species composition. The study design, which limited the minimum–maximum range of catchment‐scale characteristics, however, may have led to an overestimation of the impact of the local‐scale variables.     

A manipulative study of macroinvertebrate grazers in Hong Kong streams: do snails compete with insects?

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Alpha repeat proteins (αRep) as expression and crystallization helpers

We have previously described a highly diverse library of artificial repeat proteins based on thermostable HEAT-like repeats, named αRep. αReps binding specifically to proteins difficult to crystallize have been selected and in several examples, they made possible the crystallization of these proteins. To further simplify the production and crystallization experiments we have explored the production of chimeric proteins corresponding to covalent association between the targets and their specific binders strengthened by a linker. Although chimeric proteins with expression partners are classically used to enhance expression, these fusions cannot usually be used for crystallization. With specific expression partners like a cognate αRep this is no longer true, and chimeric proteins can be expressed purified and crystallized. αRep selection by phage display suppose that at least a small amount of the target protein should be produced to be used as a bait for selection and this might, in some cases, be difficult. We have therefore transferred the αRep library in a new construction adapted to selection by protein complementation assay (PCA). This new procedure allows to select specific binders by direct interaction with the target in the cytoplasm of the bacteria and consequently does not require preliminary purification of target protein. αRep binders selected by PCA or by phage display can be used to enhance expression, stability, solubility and crystallogenesis of proteins that are otherwise difficult to express, purify and/or crystallize.     

Forest fragmentation and rhinocryptid nest predation in central Chile

Fragmentation of forest landscapes can raise the intensity of nest predation by increasing the abundance and richness of generalist or introduced predators. Understory foraging birds, such as rhinocryptids, can be highly vulnerable to nest predation in fragmented landscapes because they often place their nests on the ground. Temperate deciduous forests in Chile have been intensively fragmented in the last centuries, causing changes in nest predator densities. We tested if predation of artificial nests, mimicking those of rhinocryptids, placed on and above ground was higher in the remnant fragments of central Chile due to an increase in predator abundance. The rate of nest predation in forest remnants was larger than in native continuous forest. Small mammals were the main nest predators. Despite high predation rates, the abundance of rhinocryptids is higher in forest remnants, suggesting that fragments might constitute ecological traps.     

River Restoration in the Twenty-First Century: Data and Experiential Knowledge to Inform Future Efforts

Despite some highly visible projects that have resulted in environmental benefits, recent efforts to quantify the number and distribution of river restoration projects revealed a paucity of written records documenting restoration outcomes. Improving restoration designs and setting watershed priorities rely on collecting and making accessible this critical information. Information within the unpublished notes of restoration project managers is useful but rarely documents ecological improvements. This special section of Restoration Ecology is devoted to the current state of knowledge on river restoration. We provide an overview of the section’s articles, reflecting on lessons learned, which have implications for the implementation, legal, and financing frameworks for restoration. Our reflections are informed by two databases developed under the auspices of the National River Restoration Science Synthesis project and by extensive interactions with those who fund, implement, and permit restoration. Requiring measurable ecological success criteria, comprehensive watershed plans, and tracking of when and where restoration projects are implemented are critical to improving the health of U.S. waters. Documenting that a project was put in the ground and stayed intact cannot be equated with ecological improvements. However, because significant ecological improvements can come with well‐designed and ‐implemented stream and river restorations, a small investment in documenting the factors contributing to success will lead to very large returns in the health of our nation’s waterways. Even projects that may appear to be failures initially can be turned into success stories by applying the knowledge gained from monitoring the project in an adaptive restoration approach.     

Optimization of the hydrolysis of lignocellulosic residues by using radial basis functions modeling and particle swarm optimization

The concentrations of glucose and total reducing sugars obtained by chemical hydrolysis of three different lignocellulosic feedstocks were maximized. Two response surface methodologies were applied to model the amount of sugars produced: (1) classical quadratic least-squares fit (QLS), and (2) artificial neural networks based on radial basis functions (RBF). The results obtained by applying RBF were more reliable and better statistical parameters were obtained. Depending on the type of biomass, different results were obtained. Improvements in fit between 35% and 55% were obtained when comparing the coefficients of determination (R²) computed for both QLS and RBF methods. Coupling the obtained RBF models with particle swarm optimization to calculate the global desirability function, allowed to perform multiple response optimization. The predicted optimal conditions were confirmed by carrying out independent experiments.     

Spatial heterogeneity of wind forcing: application to artificial reef functioning influenced by the circulation in the Bay of Marseilles, France

In the frame of the largest French project of artificial production reefs, initiated by the city of Marseilles in 2001, the present study aimed at describing the hydrodynamic pattern of the coastal area considered, by the use of a 3D numerical modelling. Results were local wind statistics, bottom current fields and drifting particle maps. The knowledge of the hydrodynamic connexions between particle (such as larvae) sources or targeted areas linked to the reefs, allows us to explain the success or failure of the reefs' colonizing. Moreover, the study confirms the wind spatial variability and demonstrates the error resulting from the use of an average but locally absent wind direction.     

Generating transgenic mice from bacterial artificial chromosomes: transgenesis efficiency, integration and expression outcomes

Transgenic mice are widely used in biomedical research to study gene expression, developmental biology, and gene therapy models. Bacterial artificial chromosome (BAC) transgenes direct gene expression at physiological levels with the same developmental timing and expression patterns as endogenous genes in transgenic animal models. We generated 707 transgenic founders from 86 BAC transgenes purified by three different methods. Transgenesis efficiency was the same for all BAC DNA purification methods. Polyamine microinjection buffer was essential for successful integration of intact BAC transgenes. There was no correlation between BAC size and transgenic rate, birth rate, or transgenic efficiency. A narrow DNA concentration range generated the best transgenic efficiency. High DNA concentrations reduced birth rates while very low concentrations resulted in higher birth rates and lower transgenic efficiency. Founders with complete BAC integrations were observed in all 47 BACs for which multiple markers were tested. Additional founders with BAC fragment integrations were observed for 65% of these BACs. Expression data was available for 79 BAC transgenes and expression was observed in transgenic founders from 63 BACs (80%). Consistent and reproducible success in BAC transgenesis required the combination of careful DNA purification, the use of polyamine buffer, and sensitive genotyping assays.