How orientational order governs collectivity of folded proteins

The past decade has witnessed the development and success of coarse‐grained network models of proteins for predicting many equilibrium properties related to collective modes of motion. Curiously, the results are usually robust toward the different cutoff distances used for constructing the residue networks from the knowledge of the experimental coordinates. In this study, we present a systematical study of network construction and their effect on the predicted properties. Probing bond orientational order around each residue, we propose a natural partitioning of the interactions into an essential and a residual set. In this picture, the robustness originates from the way with which new contacts are added, so that an unusual local orientational order builds up. These residual interactions have a vanishingly small effect on the force vectors on each residue. The stability of the overall force balance then translates into the Hessian as small shifts in the slow modes of motion and an invariance of the corresponding eigenvectors. We introduce a rescaled version of the Hessian matrix and point out a link between the matrix Frobenius norm based on spectral stability arguments and orientational local order. A recipe for the optimal choice of partitioning the interactions into essential and residual components is prescribed. Implications for the study of biologically relevant properties of proteins are discussed with specific examples. Proteins 2010. © 2010 Wiley‐Liss, Inc.     

EVOLUTION OF VARIATION AND VARIABILITY UNDER FLUCTUATING,STABILIZING, AND DISRUPTIVE SELECTION

How variation and variability (the capacity to vary) may respond to selection remain open questions. Indeed, effects of different selection regimes on variational properties, such as canalization and developmental stability are under debate. We analyzed the patterns of among‐ and within‐individual variation in two wing‐shape characters in populations of Drosophila melanogaster maintained under fluctuating, disruptive, and stabilizing selection for more than 20 generations. Patterns of variation in wing size, which was not a direct target of selection, were also analyzed. Disruptive selection dramatically increased phenotypic variation in the two shape characters, but left phenotypic variation in wing size unaltered. Fluctuating and stabilizing selection consistently decreased phenotypic variation in all traits. In contrast, within‐individual variation, measured by the level of fluctuating asymmetry, increased for all traits under all selection regimes. These results suggest that canalization and developmental stability are evolvable and presumably controlled by different underlying genetic mechanisms, but the evolutionary responses are not consistent with an adaptive response to selection on variation. Selection also affected patterns of directional asymmetry, although inconsistently across traits and treatments.     

Effects of fire disturbance on the soil physical and chemical properties and vegetation of Pinus massoniana forest in south subtropical area

A variety of studies on the impact of fire disturbance on ecosystems has shown that the physical and chemical properties of soil after fire disturbance change notably. Meanwhile, little is known about the effects of different fire intensities on the soil properties and vegetation after fire disturbance, especially in the south subtropical area. In this paper, we analyzed the soil physical and chemical properties, vegetation species and species diversity of fire center, fire edge (which was burned a year ago) and non-burned Pinus massoniana plantation in Gaoyao, Guangdong province, China. The results showed that the soil conductivity, water content, total nitrogen, total potassium, and available potassium content of fire center were significantly higher than those of the non-burned land, and pH was higher than that of fire edge, whereas the available nitrogen, total phosphorus and organic matter content were much lower, which were generally existed in 0–10 cm soil layer and 10–30 cm soil layer. Changes of the soil properties of fire edge were similar with those of fire center, but less significant, and seemed to be more complex. Effects of burning on the vegetation of fire disturbance plots were found to be notable, species number and average height of plants of fire disturbance plots were lower than those of the non-burned plots, a difference of species diversity and uniformity were also shown, and finally, the composition of plant community also changed, e.g., pioneer species such as D. dichotoma, etc., dominated, and drought-resistant plants, heat-resistant plants and positive plants increased after burning.     

A hexanuclear iron(III) complex [Fe6O2(OH)2(PhCOO)10(hedmp)2]·3CH3CN assembled from 2-hydroxyethyl-3,5-dimethyl pyrazole

In order to assemble polynuclear iron(III) complexes, the coordination chemistry of the 2-hydroxyethyl-3,5-dimethylpyrazole (hedmp-H) ligand has been investigated. Reaction of hedmp-H with trinuclear iron carboxylate precursor [Fe₃O(PhCOO)₆(H₂O)₃]Cl in acetonitrile yielded the hexanuclear Fe(III) complex [Fe₆O₂(OH)₂(PhCOO)₁₀(hedmp)₂]·3CH₃CN (1). This aggregate has been characterized by employing various analytical techniques, spectroscopic studies and single crystal X-ray diffraction. Detailed magnetic susceptibility measurements revealed that 1 displays an S_T = 5 ground state.     

Nanorods and nanofilms of ZnO generated at the liquid-liquid interface

Reaction between zinc cupferron and alkali at the organic-aqueous interface has been investigated in detail. In the presence of an organic amine, this reaction yields ZnO nanorods, the morphology depending on the concentration of reactants. In the absence of the amine, ultrathin films of ZnO are produced. Amazingly, both the nanorods and thin films are single crystalline in nature, even though the synthesis is carried out at room-temperature. Single-crystalline, substrate-free ultrathin films of ZnO, is indeed an extraordinary feature of synthesis at the liquid-liquid interface. Photoluminescence spectra show defect-related bands besides that due to band edge emission. The nanostructures exhibit ferromagnetism due to surface defects.     

Metal-dependent dimensionality in coordination polymers of a semi-rigid dicarboxylate ligand with additional amide groups: Syntheses, structures and luminescent properties

Three new coordination polymers, [CdL(H₂O)₃·H₂O]_n (1), [MnL(H₂O)₂]_n (2) and [ZnL]_n (3) (L = 2,2′-[1,4-bis(-benzamido)]diacetate) have been hydrothermally synthesized. Complex 1 and complex 2 are 1-D infinite zigzag chain and 2-D rectangular grid networks, respectively, in which are further stabilized by hydrogen bonds, thus affording two 3-D supramolecular frameworks. Complex 3 exhibits a (4, 4)-connected PtS topology. Moreover, an unusual phenomenon has been observed that the dimension of these coordination polymers gradually increases with the decrease of coordination numbers of metal ions. In addition, complex 1 exhibits a strong blue luminescence in the solid state at room temperature and may be potential candidate for luminescent materials.     

Synthesis of the long‐persistence phosphor CaAl2O4:Eu2+, Dy3+, Nd3+ by combustion method and its luminescent properties

Calcium aluminate phosphor co‐doped Eu²⁺, Dy³⁺, Nd³⁺ is prepared by the combustion method. We study systemically the influences of the quantity of mixed Dy³⁺ ion, the quantity of flux H₃BO₃, the differences in dispersing methods between magnetic stirring and ultrasonic dispersing and the combustion temperature on the long‐persistence phosphor. The analytical results indicate that Dy³⁺ ion improves the properties of the phosphors CaAl₂O₄:Eu²⁺, Nd³⁺. The appropriate quantity of flux H₃BO₃ to reduce the forming temperature of the sample was determined. The monoclinic single phase of CaAl₂O₄ formed at 500°C and remained steady. The calcium aluminate co‐doped Eu²⁺, Dy³⁺, Nd³⁺ was synthesized by dispersal of the raw material using the ultrasonic method, and it had better optical properties. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis and luminescence properties of lanthanide complexes with a new tripodal ligands featuring salicylamide arms

A series of luminescent lanthanide complexes with a new tripodal ligand featuring salicylamide arms, 2,2′,2″‐nitrilotris(2‐furfurylaminoformylphenoxy)triethylamine (L), were synthesized and characterized by elemental analysis, IR and molar conductivity measurements. Photophysical properties of the complexes were studied by means of UV–vis absorption and steady‐state luminescence spectroscopy. Excited‐state luminescence lifetimes and quantum yield of the complexes were determined. Luminescence studies demonstrated that the tripodal ligand featuring salicylamide arms exhibits a good antennae effect with respect to the Tb(III) and Dy(III) ion due to efficient intersystem crossing and ligand to metal energy transfer. From a more general perspective, this work offers interesting perspectives for the development of efficient luminescent stains and enlarges the arsenal for developing novel luminescent lanthanide complexes of salicylamide derivatives. Copyright © 2009 John Wiley & Sons, Ltd.     

Biosurfactant production and growth kinetics of bacteria in a designer marine medium: improved physiochemical properties

A combinatorial screening strategy was adopted for the development of a suitable medium for enhanced biosurfactant production by a marine strain. As a result, a modified marine medium (MMM) was developed, which contained urea and strontium chloride besides other salts important for the growth of marine bacteria. This medium supported growth, evident from a higher maximum growth rate value of 0.42 h(-1) and an enhanced biosurfactant production of 2.58 g/L. The critical micelle concentration (CMC) was determined for the biosurfactants obtained from all tested media combinations. The biosurfactant produced with this medium was stable at high temperature (100 °C), a wide range of pH (5-11) and salt concentration of 5-35%. The emulsifying activity and stability of the biosurfactant obtained using MMM was better than the biosurfactant obtained using conventional media. This biosurfactant with improved physiochemical properties is suitable for a wide range of applications in industry and for marine environmental cleaning.