基于SSR标记的荷花品种遗传多样性及群体结构分析

采用SSR标记技术对42个荷花品种( Nelumbo spp.)的基因组DNA进行扩增,在此基础上,对供试品种进行UPGMA聚类分析、群体结构分析和主坐标分析( PCoA)。结果表明：采用17对SSR引物从42个荷花品种的基因组DNA中扩增出77个位点,多态性位点百分率为88.31%;每对引物可扩增出1~9个多态性位点。根据Nei's遗传距离,供试的42个荷花品种可被分成Ⅰ和Ⅱ两组,分别包含3和39个品种;在Nei's遗传距离0.150处,Ⅱ组被进一步分成Ⅱa、Ⅱb和Ⅱc 3个亚组,分别包含3、16和20个品种。群体结构分析结果表明：组分概率高于等于0.80时,供试的42个荷花品种被分成Pop1、Pop2和混合群3个亚群,分别包含17、16和9个品种。 PCoA分析结果表明：在F1水平上,供试的42个荷花品种被分成2个部分;其中,Pop1亚群的品种均分布在第二和第三象限,而Pop2亚群的品种则分布在第一和第四象限。总体来看,聚类分析、群体结构分析和PCoA分析的结果基本一致。综合分析结果表明：玉组包含美洲黄莲( N. lutea Pers.)品种‘艾江南',且与传统中国莲( N. nucifera Gaertn.)品种的亲缘关系最远,故认为该组为美洲黄莲;Ⅱ组为中国莲,其中,Ⅱc亚组以传统中国莲品种为主,而Ⅱb亚组则偏重于美洲黄莲。总体上看,供试的42个荷花品种主要被分为中国莲和美洲黄莲两组,而中美杂交莲并没有独立成组,其成因有待进一步研究。     

Eating between the Lines: Mississippian Migration and Stable Carbon Isotope Variation in Fort Ancient Populations

ABSTRACT   Appreciating variation along the edges of traditional archaeological Culture Historical boundaries requires close consideration of social contexts associated with culture contact. We focus on dietary variation as a function of these concerns through a case study of Fort Ancient populations who, on average, consumed lower quantities of maize than their Mississippian neighbors as determined by stable carbon isotope ratios of bone collagen. However, this dichotomy is not as rigid as initially thought, with some Fort Ancient burials producing stable carbon isotope ratios similar to Mississippian cases. Detailed investigation of internal variation of carbon isotopes for human burials at the SunWatch site provides evidence that contact included small-scale Mississippian migrations to Fort Ancient sites. The main conclusion is that variation in diet and archaeological context can be a useful approach for examining prehistoric migration.     

荷花LEAFY基因的克隆及表达分析

LEAFY（LFY）基因是花分生组织形成的必需基因,在成花过程中发挥重要作用。本研究以荷花品种‘红霞满天’为材料,利用已经获得的荷花LFY基因片段,采用RT-PCR和RACE技术克隆得到荷花LFY基因cDNA序列,命名为NnLFY。NnLFY全长cDNA为1 494 bp,开放阅读框（ORF）为1 173 bp,编码390个氨基酸,预测其相对分子量为44 517.1 Da。与其他物种已知的LFY基因序列进行同源性对比分析并构建系统进化树,结果显示荷花LFY基因与甜瓜LFY基因的亲缘关系最近。实时荧光定量PCR结果表明,LFY基因在荷花幼叶期、花蕾期、盛花期的根、茎、叶、花中均有表达,其中,花蕾期各器官的表达量较高。     

Soil seed-bank composition reveals the land-use history of calcareous grasslands

We compared soil seed banks and vegetation of recent (established on abandoned arable fields) and ancient (continuously managed as pastures at least since 1830) calcareous grasslands if there is any impact of former arable field use. The study was carried out in two regions of Southern Germany with well-preserved dry grassland vegetation: the western Jurassic mountains (Kaltes Feld) and the climatically drier eastern part of Southern Germany (Kallmünz).Total number of species in the seed bank was similar in both regions, but species composition partly differed, reflecting phytogeographical differences between the regions. The total number of emerged seedlings showed a large disparity (5457 compared to 2523 seedlings/m² in Kaltes Feld and Kallmünz, respectively).Though there were differences in seed bank composition and size, we found a uniform pattern of plant traits (affiliation to phytosociological groups, Raunkiaer plant life-forms and seed longevity), which depended on the age of the grassland.The main conclusion is that seed banks in contemporary calcareous grasslands still reflect the history of former land use – in this case arable cultivation, even though it occurred a long time ago (up to 150 years). Indicators of former arable fields are germinable seeds of weeds which have persisted in the soil to the present. By contrast, weedy species are completely absent from the seed banks of ancient grasslands. Soil seed banks of recent grasslands may be of substantial conservation importance because they may store seeds of rare and endangered weed species such as Kickxia spuria, Silene noctiflora and Stachys annua, the majority of which have already gone extinct from the current vegetation of the study sites.     

Aggregation,interregional interaction,and postmarital residence patterning: A study of biological variation in the late prehistoric middle Ohio Valley

This study examines a perennial problem in anthropology, changes in postmarital residence patterning. Cross‐cultural patterns related to shifts from patrilocal to matrilocal patterns have been attributed to changes in subsistence and/or the result of migrants entering a populated region. Shifts from matrilocal to multilocal patterns have been found to be related to depopulation. This study examines these possibilities in an archeological context through morphometric analyses of human dentition. Comparisons in variability among males and females are made at four Fort Ancient sites in the Middle Ohio Valley that date to sequential time periods between circa A.D. 1000 and 1650. Results show that the earliest site (Turpin) that was occupied during the transition to maize agriculture was patrilocal, whereas two subsequent sites (Anderson and SunWatch) that were occupied after the transition to a maize‐focused diet reflect a matrilocal pattern. The most recently occupied site (Madisonville), occupied during a time of depopulation of the region after a decline in levels of maize consumption and a marked population shuffling contains a multilocal pattern. These results fit well with the various cross‐cultural findings regarding shifts in postmarital residence patterns. Am J Phys Anthropol 154:270–278, 2014. © 2014 Wiley Periodicals, Inc.     

Effects of water regime and habitat continuity on the plant species composition of floodplain forests

Questions: 1. How big is the difference in the herbaceous layer composition between flooded and unflooded stands? 2. Are there species or species groups which have an affinity to ancient vs. recent forests in stands with different water regimes? 3. Are patterns of life history traits different between flooded and unflooded stands as well as between ancient and recent forests in stands with a different water regime? Location: Floodplain forests in the Middle Elbe region and district of Leipzig, Central Germany. Location: The herbaceous layer was studied in randomly selected quadrats of 9 m² in 2000 and 2001. Six ancient (n_plot=59) and six adjacent recent forests (n_plot=108) were investigated in flooded stands as well as three ancient (n_plot=41) and three recent forests (n_plot=70) in stands that have not been flooded for 50 years. The association of single species, species groups and life history traits were statistically tested for flooded vs. unflooded stands and for ancient vs. recent forests. Results: Interruption of flooding caused a complete species turnover in the herbaceous layer composition. Whereas in the still flooded stands typical alluvial species prevail, species composition in stands without flooding for 50 years showed a closed relation to the Stellario‐Carpinetum. Six herbaceous species in the flooded and five in the unflooded stands showed a preference for ancient forests. Only one species in the flooded and six herbaceous species in the unflooded stands are significantly associated with recent forests. Life history traits differ between flooded and unflooded stands but are similar in ancient and recently flooded stands, while unflooded ancient forests have more geophytes and myrmecochorous species than recent forests. Conclusions: The specificity of species composition in floodplain forests can only be maintained by regular flooding. Interruption of inundations lead to differences in the patterns of species composition and life history traits between ancient and recent forests.     

Using genetic evidence to evaluate four palaeoanthropological hypotheses for the timing of Neanderthal and modern human origins

A better understanding of the evolutionary relationship between modern humans and Neanderthals is essential for improving the resolution of hominin phylogenetic hypotheses. Currently, four distinct chronologies for the timing of population divergence are available, ranging from the late Middle Pleistocene to the late Early Pleistocene, each based on different interpretations of hominin taxonomy. Genetic data can present an independent estimate of the evolutionary timescale involved, making it possible to distinguish between these competing models of hominin evolution. We analysed five dated Neanderthal mitochondrial genomes, together with those of 54 modern humans, and inferred a genetic chronology using multiple age calibrations. Our mean date estimates are consistent with a process of genetic divergence within an ancestral population, commencing approximately 410-440 ka. These results suggest that a reappraisal of key elements in the Pleistocene hominin fossil record may now be required.     

Rapid evolution of an ancient lake species flock: Freshwater limpets (Gastropoda: Ancylidae) in the Balkan Lake Ohrid

Ancient lakes have long been recognized as evolutionary theatres and hot spots of endemism; the evolution of their morphologically often highly diverse species flocks has received much attention. However, as each ancient lake has its own geological and evolutionary history, modes of speciation may differ from system to system. Ancient lakes can act as evolutionary reservoirs that assure the survival of relict species, but at the same time extant species may evolve through intralacustrine speciation. Other aspects of interest are the actual rates of immigration, diversification or extinction as well as the temporal framework of morphological change. Many of these questions have been addressed in the African (e.g. Lake Tanganyika) and Asian (e.g. Lake Baikal) ancient lakes. For an European ancient lakes (e.g. Lakes Ohrid and Prespa), such studies are largely missing. In the present paper, extraordinarily shaped endemic freshwater limpets of the genus Ancylus from the Balkan Lake Ohrid are used in a phylogeographic and phylogenetic context to test whether they represent an ancient lake species flock, to study the mode of speciation, and to assess the timing of morphological change. Based on DNA data from two mitochondrial genes (COI, LSU rDNA), it has been found that the Lake Ohrid Ancylus species form an endemic monophyletic group. In addition, the lake's feeder springs are inhabited by another, undescribed Ancylus species. All other studied waterbodies within the watershed do not support their own Ancylus lineages but are inhabited by a widespread Mediterranean taxon. The split between the species endemic to the lake and its sister taxon is dated to 1.4±0.6 million years ago. The study presents the first genetic confirmation for the existence of a species flock in a European ancient lake. Contrary to the prevailing opinion it shows that, concerning Ancylus, Lake Ohrid represents a site of intralacustrine speciation rather than an evolutionary reservoir. Moreover, it provides the first evidence for rapid morphological change in an European ancient lake species flock. See also Electronic Supplement at: http://www.senckenberg.de/odes/06-12.htm.     

沈阳市区古油松年轮宽度年表的建立

以沈阳城区昭陵古油松为样本,建立了古油松标准化年表、差值年表和自回归年表．结果表明,年表与沈阳1月和4月的极端最低气温显著相关;与2月的降水量、年均水汽压分别为显著和极显著相关,年表对4、5、9和10月的水汽压响应较强,且均与自回归年表显著相关．年表与相对湿度的年指标,4、5、6、9、10和11月月指标的相关性较高,其中与年值和5月值分别为显著相关（差值年表除外）和极显著相关．蒸发与油松的生长在全年和绝大部分月份呈负相关,其中5月最明显,而1月的蒸发量与油松年表呈正相关．年表的窄化突变佐证了1700年以来32次历史资料记录的主要旱灾年．沈阳地区的油松生长也受全球或半球尺度温度波动的影响．3种年表对以往太阳黑子的变化和地磁的活动呈现明显负相关,其中与太阳黑子活动存在显著的11年、23年和50年左右的公共周期,与地磁指标在10．5年、20年和45年左右存在共同的周期变化．     

古DNA提取技术对比及概述

从古代原始材料中提取古DNA的方法多种多样,但是古DNA的研究受限于降解严重,内源性古DNA含量低,微生物和现生人群DNA污染严重等因素的影响。能否从古代人类遗骸中成功获取可靠且足量的内源性古DNA,一直是古DNA研究领域面临的实际困难和挑战。控制污染最直接且简便的策略就是在古DNA提取阶段的有效排除,本文整理了古DNA提取常用的去除污染的方法,对比分析了每种方法表现出来的优缺点。介绍了通常使用的骨粉裂解时间,并研究了在常温环境下,不同的裂解时间对古DNA回收效率的影响,提出了常温裂解过程中最佳孵育时间。同时对常用的古DNA纯化方法及其原理和在实际应用中的表现进行了概述与讨论。本文对古DNA提取技术的概述和实践经验,为古DNA相关领域的研究提供借鉴与参考。