Taxonomic differences shape the responses of freshwater aerobic anoxygenic phototrophic bacterial communities to light and predation

Aerobic anoxygenic phototrophic (AAP) bacteria are a phylogenetically diverse and ubiquitous group of prokaryotes that use organic matter but can harvest light using bacteriochlorophyll a. Although the factors regulating AAP ecology have long been investigated through field surveys, the few available experimental studies have considered AAPs as a group, thus disregarding the potential differential responses between taxonomically distinct AAP assemblages. Here, we used sequencing of the pufM gene to describe the diversity of AAPs in 10 environmentally distinct temperate lakes, and to investigate the taxonomic responses of AAP communities in these lakes when subjected to similar experimental manipulations of light and predator removal. The studied communities were clearly dominated by Limnohabitans AAP but presented a clear taxonomic segregation between lakes presumably driven by local conditions, which was maintained after experimental manipulations. Predation reduction (but not light exposure) caused significant compositional shifts across most assemblages, but the magnitude of these changes could not be clearly related to changes in bulk AAP abundances or taxonomic richness of AAP assemblages during experiments. Only a few operational taxonomic units, which differed taxonomically between lakes, were found to respond positively during experimental treatments. Our results highlight that different freshwater AAP communities respond differently to similar control mechanisms, highlighting that in‐depth knowledge on AAP diversity is essential to understand the ecology and potential role of these photoheterotrophs.     

海洋生物多样性损害与沿海地区经济增长关系实证研究

海洋生物多样性是海洋生态系统服务的基础,保护海洋生物多样性不仅对维持地球生态系统的功能至关重要,也与人类福祉密切相关。基于沿海11个省区生态系统亚健康程度指标和物种多样性损害指标,运用面板回归模型对中国沿海地区经济增长与海洋生物多样性损害的关系进行实证考察。研究结果表明：(1)海洋生态系统亚健康程度与沿海地区经济增长之间存在显著的线性关系,随着经济增长,典型海洋生态系统亚健康状态占比呈现出持续上升趋势。此外,实施排污费制度和建立海洋自然保护区有利于抑制海洋生态系统的恶化。(2)海洋物种多样性损害与沿海地区经济增长之间存在显著“倒U”型关系,随着经济增长,海洋物种多样性损害呈现先上升后下降的态势,转折点为人均GDP 45145元,目前海南省、广西壮族自治区、河北省未跨过转折点。此外,排污费制度有利于抑制海洋物种多样性损害,而沿海地区目前的产业结构加重了海洋物种多样性损害。根据实证分析结果,海洋生态系统健康尚未出现拐点,沿海地区经济增长如果建立在对生态环境破坏的基础上,则势必会造成生物多样性的损害。因此从规范海域利用方式,完善海岸生态保护红线划定,加强生态系统的监测与管理,保持绿色可持续的...     

古菌在红树林沉积物中的多样性及其碳代谢机制

红树林湿地生态系统具有维持生物多样性、净化环境及维持海岸带生态平衡等多种功能。古菌普遍存在于红树林沉积物中,在元素的生物地球化学循环中发挥着重要作用。古菌具有丰富的碳代谢多样性,能固定CO_2,参与甲烷循环,产乙酸,降解蛋白质、多聚碳水化合物等有机质,但目前对于红树林沉积物中古菌碳代谢的研究才刚刚起步。高通量测序技术的快速发展促进了大量新的古菌门类的发现,这些新的古菌门类具备多样的碳代谢潜力。本文简要概述古菌的主要类群与分布,综述国内外有关古菌碳代谢多样性的最新研究进展,并阐明这些古菌在红树林生态系统中的生态分布和功能特征,为进一步探究古菌代谢机制提供知识基础。     

Analysis of nitrogen saturation potential in Rocky Mountain tundra and forest: implications for aquatic systems

We employed grass and forest versions of the CENTURY model under a range of N deposition values (0.02–1.60 g N m^–2 y^–1) to explore the possibility that high observed lake and stream N was due to terrestrial N saturation of alpine tundra and subalpine forest in Loch Vale Watershed, Rocky Mountain National Park, Colorado. Model results suggest that N is limiting to subalpine forest productivity, but that excess leachate from alpine tundra is sufficient to account for the current observed stream N. Tundra leachate, combined with N leached from exposed rock surfaces, produce high N loads in aquatic ecosystems above treeline in the Colorado Front Range. A combination of terrestrial leaching, large N inputs from snowmelt, high watershed gradients, rapid hydrologic flushing and lake turnover times, and possibly other nutrient limitations of aquatic organisms constrain high elevation lakes and streams from assimilating even small increases in atmospheric N. CENTURY model simulations further suggest that, while increased N deposition will worsen the situation, nitrogen saturation is an ongoing phenomenon.     

滨海湿地生态系统微生物驱动的氮循环研究进展

滨海湿地生态系统介于陆地生态系统和海洋生态系统之间,其类型多种多样,环境差异极大,微生物种类丰富。近年来,随着人为氮源的大量输入,造成滨海湿地生态系统富营养化污染问题日趋严重。本文主要总结了滨海湿地生态系统微生物驱动的固氮、硝化、反硝化、厌氧氨氧化、NO_3~-还原成铵等主要氮循环过程,并综述了通过功能基因(如nifH、amoA、hzo、nirS、nirK、nrfA)检测微生物群落多样性及其环境影响因素的相关研究,旨在更好理解微生物驱动氮循环过程以去除氮,以期为减轻富营养化和危害性藻类爆发提供科学依据。     

高山和极地植物功能生态学研究进展

由于环境条件恶劣,所以高山地区（特别是树木分布线以上区域）和极地地区通常被认为是陆地上最为极端的生境之一,但是高山和极地区域却也拥有众多极具价值的生物资源。因此自1896年以来,作为生物进化研究中的热点和难点。高山和极地植物对生境的适应机制和策略一直倍受研究者们的关注。本文以植物生态学、植物生理学、气象学等学科资料,分析了高山和北极植物的特有生活型,并认为它是一种主要的适应机制。通过对全球主要高山和极地植物生长地的局部气候特点的分析,作者肯定了植物的特化适应现象与极端环境各因素间存在的密切关系。     

Role of changing environmental parameters in leaf gas exchange of <Emphasis Type="Italic">Arbutus unedo</Emphasis> L. assessed by field and laboratory measurements

In the frame of the foreseen climate global changes we analysed the physiological responses of Arbutus unedo L. to the variations of carbon dioxide concentration, leaf temperature, and irradiance by measurements of leaf gas exchange and leaf water potential performed both in field and in the laboratory. Stomatal conductance was not affected by increase of leaf temperature. The growth conditions of potted plants likely made stomata more sensitive to the variation of external parameters than naturally growing plants. The interaction between high CO₂ concentration and temperature involved important down-regulation mechanisms in the metabolic pathway of the carbon fixation. From an ecological point of view, the ability of A. unedo to adapt to the field stress makes it highly competitive in the Mediterranean plant community.     

Human activities and climate variability drive fast‐paced change across the world's estuarine–coastal ecosystems

Time series of environmental measurements are essential for detecting, measuring and understanding changes in the Earth system and its biological communities. Observational series have accumulated over the past 2–5 decades from measurements across the world's estuaries, bays, lagoons, inland seas and shelf waters influenced by runoff. We synthesize information contained in these time series to develop a global view of changes occurring in marine systems influenced by connectivity to land. Our review is organized around four themes: (i) human activities as drivers of change; (ii) variability of the climate system as a driver of change; (iii) successes, disappointments and challenges of managing change at the sea‐land interface; and (iv) discoveries made from observations over time. Multidecadal time series reveal that many of the world's estuarine–coastal ecosystems are in a continuing state of change, and the pace of change is faster than we could have imagined a decade ago. Some have been transformed into novel ecosystems with habitats, biogeochemistry and biological communities outside the natural range of variability. Change takes many forms including linear and nonlinear trends, abrupt state changes and oscillations. The challenge of managing change is daunting in the coastal zone where diverse human pressures are concentrated and intersect with different responses to climate variability over land and over ocean basins. The pace of change in estuarine–coastal ecosystems will likely accelerate as the human population and economies continue to grow and as global climate change accelerates. Wise stewardship of the resources upon which we depend is critically dependent upon a continuing flow of information from observations to measure, understand and anticipate future changes along the world's coastlines.     

Host identity and functional traits determine the community composition of the arbuscular mycorrhizal fungi in facultative epiphytic plant species

The epiphytic vascular mycobiota is scarce and facultative in semi-arid Mediterranean ecosystems. However, unlike in soil conditions, little is known about the factors driving mycorrhizal communities in epiphytic environments. Here, we investigated the arbuscular mycorrhizal fungi (AMF) harboured by 31 plant species occurring on the trunks of Phoenix dactylifera. We wanted to ascertain if host identity and plant functional traits shape mycorrhizal communities. Specifically, we tested the plant life-cycle (perennial versus annual), the plant life-form (herbaceous versus woody), the plant origin (exotic versus native) and the plant species. The plant affiliation to species strongly influenced the AMF community composition. Plant life-form and plant life-cycle also shaped indicator taxa. The AMF structure differed between annual and perennial species and higher AMF richness was detected in perennial plants. The epiphytic plants associated with AMF irrespective of whether they were native or not, probably because here no functional differences derive from plant origin.     

Biotic integrity of the arthropod communities in the natural forests of Azores

The loss of biotic integrity in ecosystems due to human pressure has been receiving much attention from the scientific community. The primary aim of this study is to understand how the increasing human pressure on natural forests in the Azorean archipelago (North Atlantic) is affecting their epigean arthropod communities and which biological parameters it affects most. An expert team did fieldwork covering most of the natural forests (mainly inside nature reserves) of the archipelago using standardized pitfall trapping. To build a multimetric index we tested a number of taxonomic and ecological parameters that can potentially be influenced by disturbance. Sixteen of these were found to be significantly influenced by disturbance in forests. We retained seven metrics due to both, desirable scalability properties and relatively low correlation between them. These included the percentages of endemic and predator species richness and also predator abundance, which are inversely related to disturbance; and the percentages of native and saprophagous species richness and introduced and herbivore abundance, which are positively related to disturbance. All seven metrics were combined in an Index of Biotic Integrity (IBI) value. We then proceeded to understand which potential disturbance factors are influencing the biotic integrity of communities and how such influence is felt. Five disturbance factors were found to influence the IBI, although in different ways: the size and fragmentation of reserves, the distance of sites to the reserve borders, the invasion by alien plants and the density of human paths at the sites. Given that only percentages of taxonomical or ecological characteristics were chosen as metrics, we tested and found the scalability of the IBI to be possible, allowing the comparison of sites with different collecting effort or even the comparison of reserves with different areas and numbers of collecting sites in each. Finally, we propose a novel graphical representation for multimetric indices like the IBI, one which allows retaining much of the information that is usually lost in multimetric indices.