Uptake of amplifiable fragments of retrotransposon DNA from the human alimentary tract

Few attempts have been made to study the transfer of DNA from ingested food across the intestinal barrier. A low uptake of ingested DNA has been observed in mice, cattle and poultry. There have been no reports on humans so far. Maintenance of species barriers, protection against retrotransposons, optimisation of oral DNA vaccines and the fate of genetically modified foodstuffs are issues where this topic is of importance. We therefore used the high-copy-number rabbit retrotransposon RERV-H, and rabbit mitochondrial DNA, to study the transfer of DNA from ingested rabbit meat into the bloodstream of two human volunteers. A quantitative PCR was used to measure RERV-H levels in food and in the blood. Amplification with the primers selected results in the generation of a 250-bp fragment of RERV-H. Transfer across the intestinal epithelium could be demonstrated in both subjects. Levels of the fragment in the bloodstream peaked at 1–3 h after ingestion of the experimental meal. One hour after a meal of rabbit meat containing 10¹⁴ copies of RERV-H DNA, a maximum concentration of 200 copies of RERV-H DNA per ml of peripheral blood was observed, which corresponds to the uptake of approximately 10⁶ RERV-H DNA copies in 1 h. RERV-H DNA was detected in both cellular and plasma compartments. Both rabbit retrotransposon and mitochondrial DNA was taken up from the human alimentary tract. The size of the fragments detected is similar to that of SINE retrotransposons (approximately 300 bp). The fate and functionality of alimentary DNA in humans will require further study.Communicated by W. Goebel     

Premolar root morphology and metric variation in Pan troglodytes verus

Premolar root form remains an important taxonomic character in hominin alpha taxonomy. Variation in detailed aspects of root structure remains poorly characterized in extant apes. This limited comparative context hinders evaluations of the significance of root form variation in hominin systematics. Using micro‐computed tomography we examine morphological variation in premolars in 51 (n = 128 premolars) West African chimpanzees (Pan troglodytes verus). We categorize premolar root/canal form and number, based on the external root surface and pulp canal morphology, and test for a relationship between canal configuration and sex, jaw size, tooth/root size and cervix shape. Jaw size and root size/shape were quantified using standard metrics, and geometric morphometrics was used to examine root form and cervix shape. Our results confirm previous findings in external root form, but reveal previously undocumented variation in mandibular premolar canal number/form in this subspecies. The LP3 and UP4 exhibit variation in canal number/form, while the UP3 is restricted to external root configurations. The LP4 expresses only a single root/canal form. Generally, in LP3 and UP4 there is no correlation between canal form/number and sex, root size, and jaw size; UP4 canal variation covaried with cervix shape and size. Cervix size is significantly greater in three canal UP4s than two canal UP4s. Our results highlight canal form/number as an important aspect when characterizing root form. The implications of our results for the taxonomic utility of root form within the hominoid and hominin clades are discussed. Am J Phys Anthropol 150:632–646, 2013. © 2013 Wiley Periodicals, Inc.     

Mechano-chemical coupling of irrigation enhances endodontic biofilm debridement

Abstract

The complexity of the root canal system results in areas where mechanical instrumentation is impossible during endodontic treatment. To disinfect these areas, the effect of irrigation on biofilm debridement is of great significance but has not yet been well explored. Using an in vitro Enterococcus faecalis biofilm model and a biofilm reactor, the present study provides a better understanding of the relative contributions of mechanical and chemical effects of irrigation on biofilm removal, as well as the factors influencing their coupling efficiency. The results clearly demonstrate that, the mechanical effect of irrigation alone does not significantly influence the stability of biofilms. However, the mechanical effect promotes biofilm eradication by coupling with the chemical effect. In addition, both the irrigant concentration and the irrigant-biofilm contact time are among the key factors affecting the mechano-chemical coupling. This knowledge may serve to better direct endodontists in designing irrigation regimes during root canal therapy.     

Drosophila Lin-7 is a component of the Crumbs complex in epithelia and photoreceptor cells and prevents light-induced retinal degeneration

The Drosophila Crumbs protein complex is required to maintain epithelial cell polarity in the embryo, to ensure proper morphogenesis of photoreceptor cells and to prevent light-dependent retinal degeneration. In Drosophila, the core components of the complex are the transmembrane protein Crumbs, the membrane-associated guanylate kinase (MAGUK) Stardust and the scaffolding protein DPATJ. The composition of the complex and some of its functions are conserved in mammalian epithelial and photoreceptor cells. Here, we report that Drosophila Lin-7, a scaffolding protein with one Lin-2/Lin-7 (L27) domain and one PSD-95/Dlg/ZO-1 (PDZ) domain, is associated with the Crumbs complex in the subapical region of embryonic and follicle epithelia and at the stalk membrane of adult photoreceptor cells. DLin-7 loss-of-function mutants are viable and fertile. While DLin-7 localization depends on Crumbs, neither Crumbs, Stardust nor DPATJ require DLin-7 for proper accumulation in the subapical region. Unlike other components of the Crumbs complex, DLin-7 is also enriched in the first optic ganglion, the lamina, where it co-localizes with Discs large, another member of the MAGUK family. In contrast to crumbs mutant photoreceptor cells, those mutant for DLin-7 do not display any morphogenetic abnormalities. Similar to crumbs mutant eyes, however, DLin-7 mutant photoreceptors undergo progressive, light-dependent degeneration. These results support the previous conclusions that the function of the Crumbs complex in cell survival is independent from its function in photoreceptor morphogenesis.     

Localization of selected pathogens of cotton within the southern green stink bug

Southern green stink bugs, Nezara viridula (L.) (Hemiptera: Pentatomidae), are pests of cotton recently shown to ingest, retain, and introduce some pathogens of cotton into bolls. The objective of this study was to determine where pathogen colonization occurs in N. viridula after ingestion. Laboratory‐reared adult N. viridula were fed sterile green beans soaked in water (control) or beans previously soaked in a suspension of one of three opportunistic bacterial pathogens [Pantoea agglomerans (Ewing & Fife), Pantoea ananatis (Serrano) Truper & De’Clari, or Klebsiella pneumoniae (Schroeter)] or a yeast [Nematospora coryli (Peglion)]. The insect rostrum, head, and alimentary canal were subsequently processed to determine the presence of pathogenic organisms. Overall, the alimentary canal exhibited significantly more bacterial colony forming units per g tissue (mean ± SEM = 4 806.3 ± 397.2) than the head (443.4 ± 397.2) and rostrum (46.0 ± 397.2); concentrations in the head and rostrum did not differ significantly. All four pathogens were detected in the alimentary canal, but only P. agglomerans and N. coryli were detected in the rostrum and head. Although P. ananatis and K. pneumoniae were only detected in the alimentary canal, their ranges of concentrations were similar to those of P. agglomerans and N. coryli in this tissue. Non‐selective media indicated that other bacterial fauna was also detected in all study insects. Thus, N. viridula does not discriminate with regard to ingestion of pathogens. The observed distribution pattern of tested bacteria and yeast in certain tissues of N. viridula clarifies the propensity for transmission of P. agglomerans and N. coryli. Results are discussed in relation to future research avenues examining selective colonization of certain pathogens and frequency of host infection by adults harboring the pathogenic organisms.     

Investigation of gut microbial communities associated with indigenous honey bee (Apis mellifera jemenitica) from two different eco-regions of Saudi Arabia

The microbial communities associated with the alimentary tract of honey bees are very important as they help with food digestion, provide essential nutrients, protect the host from pathogens, detoxify harmful molecules, and increase host immunity. In this study, the structural diversity of the gut microbial communities of native honey bees, Apis mellifera jemenitica from two different geographical regions (Riyadh and Al-Baha) of Saudi Arabia was analyzed by culture-dependent methods and 16S ribosomal RNA (rRNA) gene sequencing. In this study, 100 bacterial isolates were cultivated and phylogenetic analyses grouped them into three phyla: Proteobacteria, Firmicutes, and Actinobacteria. Bacteria in the phylum Proteobacteria were the most dominant (17 species), followed by Firmicutes (13 species) and Actinobacteria (4 species). Some of the identified bacteria (Citrobacter sp., Providencia vermicola, Exiguobacterium acetylicum, and Planomicrobium okeanokoites) were reported for the first time in the genus Apis, while others identified bacteria belonged to the genera Proteus, Enterobacter, Bacillus, Morganella, Lactobacillus, and Fructobacillus. To the best of our knowledge, this is the first study on the gut microbiota of the local honey bees in Saudi Arabia.     

Calcitonin-like immunochemical staining in the alimentary tract of Ciona intestinalis L.

Summary Calcitonin-like immunoreactivity has been found with the peroxidase-anti-peroxidase (PAP) method in cells of the epithelium of the alimentary tract as well as in nerve cells and nerve fibers in the connective tissue underlying the epithelium of the alimentary tract of Ciona intestinalis L. The nature of these cells is discussed with reference to endocrine-like cells found in the alimentary tract of other protochordates and to the possible dual role of calcitonin occurring in the gastroenteropancreatic system, on the one hand, and in the nervous system, on the other.     

Interim Response of Dissolved Oxygen to Reestablished Flow in the Kissimmee River,Florida, U.S.A.

Restoration of the Kissimmee River should have multiple ecological benefits including improved dissolved oxygen (DO) within the river channel. Channelization of the Kissimmee River virtually eliminated flow through the natural river channel. After channelization, chronically low DO concentrations were observed in the stagnant remnant channel. Although no DO data from before channelization exist, reference estimates of pre‐channelization conditions were derived from seven relatively unimpacted streams. Stations along the Kissimmee River were sampled for 3 years before construction of the first phase of the restoration project began and for up to 8 years after the completion of construction. After Phase I construction, DO concentrations in the area of the river channel to which flow had been restored increased significantly from 2.2 to 4.9 mg/L, which is similar to DO concentrations observed in the reference streams. Mean DO concentrations for the reference streams ranged from 4.6 to 6.7 mg/L. Comparison of reference data to data from the pre‐Phase I and post‐Phase I system suggests that channelization had a negative impact on DO and that DO concentrations in the post‐Phase I Kissimmee River channel have made a significant recovery. Long‐term data trends demonstrate that DO concentrations can be negatively impacted by high flow events and that recovery from these events is generally quick, suggesting some degree of resilience in the system.