Genetic polymorphisms in carnitine palmitoyltransferase 1A gene are associated with variation in body composition and fasting lipid traits in Yup'ik Eskimos

Variants of carnitine palmitoyltransferase 1A (CPT1A), a key hepatic lipid oxidation enzyme, may influence how fatty acid oxidation contributes to obesity and metabolic outcomes. CPT1A is regulated by diet, suggesting interactions between gene variants and diet may influence outcomes. The objective of this study was to test the association of CPT1A variants with body composition and lipids, mediated by consumption of polyunsaturated fatty acids (PUFA). Obesity phenotypes and fasting lipids were measured in a cross-sectional sample of Yup'ik Eskimo individuals (n = 1141) from the Center of Alaska Native Health Research (CANHR) study. Twenty-eight tagging CPT1A SNPs were evaluated with outcomes of interest in regression models accounting for family structure. Several CPT1A polymorphisms were associated with HDL-cholesterol and obesity phenotypes. The P479L (rs80356779) variant was associated with all obesity-related traits and fasting HDL-cholesterol. Interestingly, the association of P479L with HDL-cholesterol was still significant after correcting for body mass index (BMI), percentage body fat (PBF), or waist circumference (WC). Our findings are consistent with the hypothesis that the L479 allele of the CPT1A P479L variant confers a selective advantage that is both cardioprotective (through increased HDL-cholesterol) and associated with reduced adiposity.     

Quantifying telemetry collar bias when age is unknown: A simulation study with a long-lived ungulate

Radiotelemetry collars are frequently used to estimate demographic parameters of animals, such as annual survival and parturition rates. If animals are collared for multiple years and statistical adjustments are not made, these estimates can be biased by an unrepresentative age structure and individual variability of collared animals. To quantify the effects of different factors on the magnitude of these potential biases, we created a computer simulation of the female portion of a barren-ground caribou (Rangifer tarandus granti) herd and then randomly assigned collars to individuals within the simulated population. Under our default model, based on the Western Arctic Herd monitoring program, caribou were collared randomly from all females aged 2 years and over, and they remained collared for a mean of 7 years. Our simulations revealed that survival rates were underestimated by approximately 3.4% and parturition rates were overestimated by approximately 3.3%. The magnitude of these biases increased when individuals remained collared for longer periods. Increased individual variability in the population resulted in only small increases in survival and parturition rates. Because the magnitude of the bias increased steadily during the first years of the study, we found a substantial risk of incorrectly identifying a significant decline in survival in the first 7 years after marking. Including the number of years individual animals have been collared as a covariate in analyses can reduce the biases in demographic parameters and should be considered for inclusion in analyses when animal age is unknown. Actual survival rate estimates from telemetry data for the Western Arctic Herd were generally consistent with the results of these simulations. These potential biases should be considered when interpreting demographic parameters from multi-year collaring studies. © 2012 The Wildlife Society.     

Patterns in the Distribution of Cladocerans (Crustacea: Branchiopoda) in Lakes Across a North–south Transect in Alaska, USA

The remains of cladocerans were examined from the surface sediments of 51 freshwater sites along a north–south transect spanning Alaska. We identified 27 cladoceran taxa from the sediments, consisting primarily of littoral chydorid species. Variations in cladoceran assemblages were related to measured physical and chemical variables using multivariate techniques. Redundancy analysis (RDA) indicated that lake depth, total phosphorus (TP), and altitude all had a significant influence in determining the composition of cladoceran assemblages. Cladoceran communities in tundra and forest-tundra lakes, which were relatively shallow and nutrient-poor, had relatively low abundances of pelagic Cladocera, and were primarily composed of several littoral chydorid species. Among pelagic cladoceran species, there was a distinct shift in dominance from the Bosminidae in lakes in the southern boreal forest region to Daphniidae in lakes in the northern boreal forest. Daphnia dominated lakes had significantly higher total phosphorus, specific conductivity, and calcium concentrations than lakes dominated by Eubosmina. Overall, the relative importance of physical and chemical factors in structuring cladocerans is similar to other previously studied regions, and suggests the Cladocera may be useful as ecological and paleoenvironmental indicators in this region.     

Patterns of growth and body condition in sea otters from the Aleutian archipelago before and after the recent population decline

1. Growth models for body mass and length were fitted to data collected from 1842 sea otters Enhydra lutris shot or live-captured throughout south-west Alaska between 1967 and 2004. Growth curves were constructed for each of two main year groups: 1967-71 when the population was at or near carrying capacity and 1992-97 when the population was in steep decline. Analyses of data collected from animals caught during 2004, when the population density was very low, were precluded by a small sample size and consequently only examined incidentally to the main growth curves. 2. Growth curves demonstrated a significant increase in body mass and body length at age in the 1990s. Asymptotic values of body mass were 12-18% higher in the 1990s than in the 1960s/70s, and asymptotic values for body length were 10-11% higher between the same periods. Data collected in 2004 suggest a continued increase in body size, with nearly all data points for mass and length falling significantly above the 1990s growth curves. 3. In addition to larger asymptotic values for mass and length, the rate of growth towards asymptotic values was more rapid in the 1990s than in the 1960s/70s: sea otters reached 95% of asymptotic body mass and body length 1-2 years earlier in the 1990s. 4. Body condition (as measured by the log mass/log length ratio) was significantly greater in males than in females. There was also an increasing trend from the 1960s/70s through 2004 despite much year-to-year variation. 5. Population age structures differed significantly between the 1960s/70s and the 1990s with the latter distribution skewed toward younger age classes (indicating an altered lx function) suggesting almost complete relaxation of age-dependent mortality patterns (i.e. those typical of food-limited populations). 6. This study spanned a period of time over which the population status of sea otters in the Aleutian archipelago declined precipitously from levels at or near equilibrium densities at some islands in the 1960s/70s to < 5% of estimated carrying capacity by the late 1990s. The results of this study indicate an improved overall health of sea otters over the period of decline and suggest that limited nutritional resources were not the cause of the observed reduced population abundance. Our findings are consistent with the hypothesis that the decline was caused by increased killer whale predation.     

Molecular phylogenetic biodiversity assessment of arctic and boreal ectomycorrhizal Lactarius Pers. (Russulales; Basidiomycota) in Alaska, based on soil and sporocarp DNA

Despite the critical roles fungi play in the functioning of ecosystems, especially as symbionts of plants and recyclers of organic matter, their biodiversity is poorly known in high-latitude regions. In this paper, we discuss the molecular diversity of one of the most diverse and abundant groups of ectomycorrhizal fungi: the genus Lactarius Pers. We analysed internal transcribed spacer rDNA sequences from both curated sporocarp collections and soil polymerase chain reaction clone libraries sampled in the arctic tundra and boreal forests of Alaska. Our genetic diversity assessment, based on various phylogenetic methods and operational taxonomic unit (OTU) delimitations, suggests that the genus Lactarius is diverse in Alaska, with at least 43 putative phylogroups, and 24 and 38 distinct OTUs based on 95% and 97% internal transcribed spacer sequence similarity, respectively. Some OTUs were identified to known species, while others were novel, previously unsequenced groups. Non-asymptotic species accumulation curves, the disparity between observed and estimated richness, and the high number of singleton OTUs indicated that many Lactarius species remain to be found and identified in Alaska. Many Lactarius taxa show strong habitat preference to one of the three major vegetation types in the sampled regions (arctic tundra, black spruce forests, and mixed birch-aspen-white spruce forests), as supported by statistical tests of UniFrac distances and principal coordinates analyses (PCoA). Together, our data robustly demonstrate great diversity and nonrandom ecological partitioning in an important boreal ectomycorrhizal genus within a relatively small geographical region. The observed diversity of Lactarius was much higher in either type of boreal forest than in the arctic tundra, supporting the widely recognized pattern of decreasing species richness with increasing latitude.     

Effects of within-lake gradients on the distribution of fossil chironomids from maar lakes in western Alaska: implications for environmental reconstructions

We examined fossil chironomids (Diptera: Chironomidae) in the surface sediments of four maar lakes in western Alaska to determine chironomid distribution patterns with respect to within-lake gradients of water depth, LOI (loss-on-ignition), and bottom-water temperature. Linear and non-linear regressions were undertaken to test whether the within-lake distributions of fossil chironomids were uniform. Additionally, water depths where abrupt changes or breakpoints in the assemblages occur were identified using piecewise regression. Direct gradient analysis was then used to examine variation in the assemblages explained by the environmental data. For the shallowest lake, chironomid abundances of individual taxa and inferred temperatures varied little within the lake. For the three deep lakes, seven of the sixteen commonest fossil taxa varied significantly with water depth, although some lake-specific patterns were evident. Water depth was generally identified as the principal environmental variable in explaining variation in the assemblages, although sediment organic matter content and bottom-water temperature were also important. Abrupt changes in assemblages occurred at different water depths in each lake, and at only one lake did the breakpoint occur within the range of water depths defining the thermocline. Chironomid-inferred temperature trends from the lakes also showed depth-related patterns: the warmest inferred temperatures were generally from both the shallowest and deepest water depths, whereas intermediate depths yielded temperature inferences about 0.5 to 1.0°C cooler than the average within-lake value. Nevertheless, we conclude that these patterns had only a slight impact on temperature reconstructions relative to the prediction error of the model. A greater understanding of taphonomic processes is needed to determine their influence on environmental reconstructions based on chironomids. Handling editor: J. Saros     

Insights into the population structure of blue whales in the Eastern North Pacific from recent sightings and photographic identification

Blue whales were widely distributed in the North Pacific prior to the primary period of modern commercial whaling in the early 1900s. Despite concentrations of blue whale catches off British Columbia and in the Gulf of Alaska, there had been few documented sightings in these areas since whaling for blue whales ended in 1965. In contrast, large concentrations of blue whales have been documented off California and Baja California and in the eastern tropical Pacific since the 1970s, but it was not known if these animals were part of the same population that previously ranged into Alaskan waters. We document 15 blue whale sightings off British Columbia and in the Gulf of Alaska made since 1997, and use identification photographs to show that whales in these areas are currently part of the California feeding population. We speculate that this may represent a return to a migration pattern that has existed for earlier periods for eastern North Pacific blue whale population. One possible explanation for a shift in blue whale use is changes in prey driven by changes in oceanographic conditions, including the Pacific Decadal Oscillation (PDO), which coincides with some of the observed shifts in blue whale occurrence.     

A Conceptual Model of Natural and Anthropogenic Drivers and Their Influence on the Prince William Sound,Alaska, Ecosystem

Prince William Sound (PWS) is a semi-enclosed fjord estuary on the coast of Alaska adjoining the northern Gulf of Alaska (GOA). PWS is highly productive and diverse, with primary productivity strongly coupled to nutrient dynamics driven by variability in the climate and oceanography of the GOA and North Pacific Ocean. The pelagic and nearshore primary productivity supports a complex and diverse trophic structure, including large populations of forage and large fish that support many species of marine birds and mammals. High intra-annual, inter-annual, and interdecadal variability in climatic and oceanographic processes as drives high variability in the biological populations. A risk-based conceptual ecosystem model (CEM) is presented describing the natural processes, anthropogenic drivers, and resultant stressors that affect PWS, including stressors caused by the Great Alaska Earthquake of 1964 and the Exxon Valdez oil spill of 1989. A trophodynamic model incorporating PWS valued ecosystem components is integrated into the CEM. By representing the relative strengths of driver/stressors/effects, the CEM graphically demonstrates the fundamental dynamics of the PWS ecosystem, the natural forces that control the ecological condition of the Sound, and the relative contribution of natural processes and human activities to the health of the ecosystem. The CEM illustrates the dominance of natural processes in shaping the structure and functioning of the GOA and PWS ecosystems.     

Pollen Morphology of Tundra Shrubs and Submarginal Plants from Barrow, Alaska

Investigation of plant morphological features, pollen, and habitat have been made for two shrub species from Barrow, Alaska, namely Dryas integrifoila M. Vahl and Salix rotundifolia Trautv., both of which are endemic to the Arctic floristic area. The former species has small lanceolate or plate leaves, whereas the latter has rounded leaves with distinct veins, rich in vitamin C. Both have dwarf and sprawling habits. Pollen studies showed that the pollen grains of the two species are spheroidal to sub-spheroidal or prolate. The type of aperture was tricolporate; pollen size 26.3-31.3 μm; ornamentation finely reticulate under a light microscope （LM） and strlate-reticulate under a scanning electron microscope （SEM） for D. integrafoila and finely reticulate under the LM and SEM for S. rotundifolia. Comparisons were made between the pollen from the same species from Arctic collections with those from China and Japan. Investigation of pollen morphology of tundra plants can provide significant data for comparative studies of fossil pollen and for the reconstruction of paleovegetation and paleoclimate in the Barrow area.