低温与光对黄瓜幼苗子叶光合电子传递活性的影响

25～30℃和30 μmol m~(-2)s~(-1)光下培养的黄瓜幼苗,在黑暗下经 1～7℃处理24h或5℃处理24～72h,光合电子传递活性受不同程度的抑制;其抑制部位主要在PSⅡ氧化侧;随温度的降低和时间的延长,抑制部位可发展至PSⅡ及之后的电子递体上,但尚未影响PSⅠ的活性。160μmol m~(-2)s~(-1)的光强加重低温对电子传递活性的抑制,光强越高,则加重的程度越高;抑制部位从PSⅡ氧化侧发展至PSⅡ反应中心以及PSⅠ。     

In vitro aging of calmodulin generates isoaspartate at multiple Asn-Gly and Asp-Gly sites in calcium-binding domains II, III, and IV.

We have determined the major sites responsible for isoaspartate formation during in vitro aging of bovine brain calmodulin under mild conditions. Protein L-isoaspartyl methyltransferase (EC 2.1.1.77) was used to quantify isoaspartate by the transfer of methyl-3H from S-adenosyl-L-[methyl-3H]methionine to the isoaspartyl (alpha-carboxyl) side chain. More than 1.2 mol of methyl-acceptor sites per mol of calmodulin accumulated during a 2-week incubation without calcium at pH 7.4, 37 degrees C. Analysis of proteolytic peptides of aged calmodulin revealed that > 95% of the methylation capacity is restricted to residues in the four calcium-binding domains, which are predicted to be highly flexible in the absence of calcium. We estimate that domains III, IV, and II accumulated 0.72, 0.60, and 0.13 mol of isoaspartate per mol of calmodulin, respectively. The Asn-97-Gly-98 sequence (domain III) is the greatest contributor to isoaspartate formation. Other major sites of isoaspartate formation are Asp-131-Gly-132 and Asp-133-Gly-134 in domain IV, and Asn-60-Gly-61 in domain II. Significant isoaspartate formation was also localized to Asp-20, Asp-22, and/or Asp-24 in domain I, to Asp-56 and/or Asp-58 in domain II, and to Asp-93 and/or Asp-95 in domain III. All of these residues are calcium ligands in the highly conserved EF-hand calcium-binding motif. Thus, other EF-hand proteins may also be subject to isoaspartate formation at these ligands. The results support the idea that isoaspartate formation in structured proteins is strongly influenced by both the C-flanking residue and by local flexibility.     

[2-3H]ATP synthesis and 3H NMR spectroscopy of enzyme-nucleotide complexes: ADP and ADP.Vi bound to myosin subfragment 1

Summary The synthesis of [2-³H]ATP with specific activity high enough to use for ³H NMR spectroscopy at micromolar concentrations was accomplished by tritiodehalogenation of 2-Br-ATP. ATP with greater than 80% substitution at the 2-position and negligible tritium levels at other positions had a single ³H NMR peak at 8.20 ppm in 1D spectra obtained at 533 MHz. This result enables the application of tritium NMR spectroscopy to ATP utilizing enzymes.The proteolytic fragment of skeletal muscle myosin, called S1, consists of a heavy chain (95 kDa) and one alkali light chain (16 or 21 kDa) complex that retains myosin ATPase activity. In the presence of Mg²⁺, S1 converts [2-³H]ATP to [2-³H]ADP and the complex S1.Mg[2-³H]ADP has ADP bound in the active site. At 0°C, 1D ³H NMR spectra of S1.Mg[2-³H]ADP have two broadened peaks shifted 0.55 and 0.90 ppm upfield from the peak due to free [2-³H]ADP. Spectra with good signal-to-noise for 0.10 mM S1.Mg[2-³H]ADP were obtained in 180 min. The magnitude of the chemical shift caused by binding is consistent with the presence of an aromatic side chain being in the active site. Spectra were the same for S1 with either of the alkali light chains present, suggesting that the alkali light chains do not interact differently with the active site. The two broad peaks appear to be due to the two conformations of S1 that have been observed previously by other techniques. Raising the temperature to 20 °C causes small changes in the chemical shifts, narrows the peak widths from 150 to 80 Hz, and increases the relative area under the more upfield peak. Addition of orthovanadate (V_i) to produce S1.Mg[2-³H]ADP.V_i shifts both peaks slightly more upfield without chaning their widths or relative areas.     

Identification of potential proteins translated from circular RNA splice variants

Circular RNAs (circRNAs) are covalently closed RNA molecules generated from precursor RNAs by the head-to-tail backsplicing of exons. Hundreds of studies demonstrated that circRNAs are ubiquitously expressed and regulate cellular events by modulating microRNA (miRNA) and RNA-binding protein (RBP) activities. A few circRNAs are also known to translate into functional polypeptides regulating cellular physiology. All these functions primarily depend on the full-length sequence of the circRNAs. CircRNA backsplice junction sequence is the key to identifying circRNAs and their full-length mature sequence. However, some multi-exonic circRNAs exist in different isoforms sharing identical backsplice junction sequences and are termed circRNA splice variants. Here, we analyzed the previously published HeLa cell RNA-seq datasets to identify circRNA splice variants using the de novo module of the CIRCexplorer2 circRNA annotation pipeline. A subset of circRNAs with splice variants was validated by the circRNA-rolling circle amplification (circRNA-RCA) method. Interestingly, several validated circRNAs were predicted to translate into proteins by the riboCIRC database. Furthermore, polyribosome fractionation followed by quantitative PCR confirmed the association of a subset of circRNAs with polyribosome supporting their protein-coding potential. Finally, bioinformatics analysis of proteins derived from splice variants of circCORO1C and circASPH suggested altered protein sequences and structures that could affect their physiological functions. Together, our study identified novel circRNA splice variants and their potential translation into protein isoforms which may regulate various physiological processes.     

海南潜在世界自然遗产地的突出普遍价值初探

世界自然遗产地是全球最具有保护价值的自然保护地,强调全球突出普遍价值的完整性和在全球的唯一性。世界自然遗产有助于更好地保护生态系统的完整性和原真性,促进人类与自然的可持续发展。该研究在大量文献资料的基础上,以海南潜在世界自然遗产地(海南热带雨林国家公园)原生动植物及植被群落(亚洲北缘热带雨林)为研究对象,从植被类型、物种多样性、区系组成、特有种等生物生态过程方面,评估海南潜在世界自然遗产地的全球突出普遍价值。结果表明:(1)海南潜在世界自然遗产地分布有3 653种野生维管植物,资源植物种类丰富。陆栖脊椎动物有540种,各类野生动物占全国的比例高达10%～30%,生物多样性极高。(2)植物区系独特,海南岛的热带雨林植被区划属于印度-马来雨林群系,属马来区的部分呈现出热带性和与中国华南大陆的共源性显示出明显的热带边缘性质,为中国华南植物区系与亚洲热带雨林的过渡类型。(3)植物区系中的植物物种特有性较低,特有属仅有7个,特有种仅约占岛内植物的1/10,较低的特有性表明了其大陆起源特征,是生物多样性不可替代的元素,具有鲜明的环境指示特色。该研究明确了海南潜在世界自然遗产地在全球背景下的突出普遍价值,为海南未来申遗提供科学依据和技术支撑。     

云南省耿马佛洞地遗址发掘简报

佛洞地遗址位于云南省临沧市耿马傣族佤族自治县勐简乡勐简村大军赛村民小组燕子洞,坐落于一处东南开口的二叠纪灰岩穿洞,南临南汀河。2016～2017年,临沧市文物管理所在公路考古调勘期间发现该遗址;为进一步认识滇西地区旧石器时代晚期文化,2017～2018年对该遗址开展考古发掘工作。发掘区域位于洞内第四台面到第五台面间,共发掘20 m²,出土了包括石制品、动植物化石等在内的大量遗物。初步地层年代学分析显示,遗址时代为距今18400～14000年,共包含3期连续文化,文化遗物以石制品为主,总数达到9735件。佛洞地遗址作为一处热带-亚热带生境下的史前遗址,为我们构建旧石器时代晚期滇西地区文化序列、探讨特定自然生态背景下史前人类的文化适应提供了重要参考。     

镇海棘螈产卵场微生境选择

镇海棘螈(Echinotriton chinhaiensis)为国家一级重点保护野生动物,其种群面临着生境退化及丧失的重要威胁。产卵是决定镇海棘螈种群数量增长的关键环节之一,了解其产卵选择的微生境偏好可以更有针对性地保护该物种。本研究旨在确定影响镇海棘螈产卵场微生境选择的关键环境变量,同时为该物种的产卵生境保护、改造和重建提供科学基础。本文于2021年3-5月(繁殖期)在浙江省宁波市北仑区林场对镇海棘螈产卵位点(n=105)与非产卵位点(n=70)处的18个微生境变量进行调查。采用拟合优度卡方检验判断3种无序分类变量的差异性,并利用生境喜好系数对生境选择性进行分析。采用二元逻辑斯蒂回归模型对15个数值型变量进行分析,确定影响镇海棘螈产卵微生境选择的关键变量。结果显示镇海棘螈繁殖期间对产卵场微生境有明显偏好,通常产卵于朝向水坑、落叶层较厚(5.19±0.18 cm)、坡度较陡(18.64°±1.18°)和土壤含水量较低(33.51%±1.87%)的土壤基质上。此外,在大型遮蔽物中,镇海棘螈偏好选择体积较小的石块和乔木(2,994.63±316.17 cm³)作为遮蔽...     

Effects of boron on growth of tomato cell suspensions

The effects of various B levels in the culture medium on the biomass production and B concentrations of cells were studied using tomato ( Lycopersicon esculentum Mill. cv. Rodeo) cell suspensions in three separate experiments. In the initial study, no increase in cell biomass was observed after day 4 in the absence of B in the medium. These cells had lost their viability by day 6. Cells grown at a B level of 0.09 or 0.55 m M in the medium had the highest biomasses (doubled by day 6). Cells grown at 0.92 or 1.85 m M B had lower biomasses (doubled by day 8). In the other two studies, both under low (0.005–0.07 m M ) and high (2.30–4.15 m M ) concentrations of B in the media, there was only a slight increase in biomass and the cultures failed to double their biomasses even by day 10. Cells grown with 3.70 or 4.15 m M in the medium showed a black discolouration by day 6 and were no longer viable. Except in the high B study, the B concentrations in the cells did not vary after day 2. With increasing B levels in the medium, the B concentrations of cells were in near equilibrium with the media B. Due to increasing toxicity which may have altered the membrane properties of the cell, this relationship did not continue with B levels of 1.85 m M or higher. These results indicate that B enters the tomato cells through passive transport and that a passive equilibrium exists between B concentrations in the cells and in the media.