Statistical modeling of cell-to-cell variability in viral infection during passaging in suspension cell culture: Application in Monte-Carlo simulation

Packaging during the passaging of viruses in cell cultures yields various phenotypes and is regulated by viral protein expression in infected cells. Although such a packaging mechanism has a profound effect in controlling the virus yield, little is known about the underlying statistical models followed by virus packaging and protein expression among cells infected with the virus. A predictive framework combining identification of the probability density function (PDF) based on log-likelihood and using the PDF for Monte-Carlo simulations is developed. The Birnbaum–Saunders distribution was found to be consistent with all three-virus packaging levels, including nucleocapsids/occlusion-derived virus (ODV), ODVs/polyhedra, and polyhedra/cell for both wild-type and genetically modified AcMNPV. Next, it was demonstrated that PDF fitting could be used to compare two viruses having distinctly different genetic configurations. Finally, the identified PDF can be incorporated in RNA synthesis parameters for baculovirus infection to predict the cell-to-cell variability in protein expression using Monte-Carlo simulations. The proposed tool can be used for the estimation of uncertainty in the kinetic parameter and prediction of cell-to-cell variability for other biological systems.     

Autographa Californica Multiple Nucleopolyhedrovirus orf13 Is Required for Efficient Nuclear Egress of Nucleocapsids

Virologica Sinica - Autographa californica multiple nucleopolyhedrovirus (AcMNPV) orf13 (ac13) is a conserved gene in all sequenced alphabaculoviruses. However, its function in the viral life cycle...     

The effect of host plant species on performance and movement behaviour of the cabbage looper Trichoplusia ni and their potential influences on infection by Autographa californica multiple nucleopolyhedrovirus

• 1 Cabbage loopers Trichoplusia ni (Hübner) (Lepidoptera: Noctuidae) are serious pests in greenhouses growing tomatoes, cucumbers and bell peppers. A potential microbial control, now in development, is the broad host‐range virus Autographa californica multiple nucleopolyhedrovirus (AcMNPV).
• 2 The relationships between the three host plants and the feeding behaviour, larval movement and performance of cabbage looper larvae that might relate to their interaction with AcMNPV applications were investigated.
• 3 Larvae reared on cucumber plants consumed approximately ten‐fold more leaf area than larvae reared on pepper plants and almost five‐fold more than larvae reared on tomato plants. This could influence the amount of AcMNPV consumed if it were used as a microbial spray because increased consumption can be associated with increased probability of infection. Survival from neonate to pupa also varied, with the greatest being on cucumber, followed by tomato and pepper plants. Larvae fed cucumber were approximately four‐fold heavier than larvae fed tomato and over 15‐fold heavier than larvae fed pepper plants.
• 4 The distribution of larvae on plants in commercial greenhouses where a single crop was being grown also varied with food plant with 73% being found on the bottom and middle portions of tomato plants and 87% occurring in the top portions of pepper plants. Larvae tended to be distributed on the middle portion of cucumber plants, the lower portion of tomato plants and the top portion of pepper plants. Larval movement did not vary between AcMNPV‐infected and uninfected controls.
• 5 It is predicted that the higher leaf area consumption and location of larvae in the middle portion of cucumber plants may make them more susceptible to viral sprays. Furthermore, given their greater survival than larvae fed tomato and pepper, there may be a greater need for virus applications.

     

Developmental Changes in the Structure of Endosperm Starch of Rice (Oryza sativa L.)

The developmental changes in the structure and properties of endosperm starches were investigated using the near-isogenic lines for wx alleles of rice. The amylose content in nonwaxy starch was increased during the development of rice grains. Because the accumulation of amylose in endosperm stopped earlier than that of amylopectin during development, the percentages of amylose reached a maximum at the 17th day after flowering in nonwaxy endosperm. Since the distributions of the unit-chain length of amylopectin in waxy and nonwaxy starches were unchanged with the development of the grains, these amylopectins would be synthesized in a similar manner through development. The structure and properties of endosperm starches were reconfirmed to be conspicuously affected by the temperature at the early developmental stages of the grain-filling period, namely, they appeared to be characterized by the temperature at which the starch was accumulated in the endosperm.     

How viruses access the nucleus

Many viruses depend on nuclear proteins for replication. Therefore, their viral genome must enter the nucleus of the host cell. In this review we briefly summarize the principles of nucleocytoplasmic transport, and then describe the diverse strategies used by viruses to deliver their genomes into the host nucleus. Some of the emerging mechanisms include: (1) nuclear entry during mitosis, when the nuclear envelope is disassembled, (2) viral genome release in the cytoplasm followed by entry of the genome through the nuclear pore complex (NPC), (3) capsid docking at the cytoplasmic side of the NPC, followed by genome release, (4) nuclear entry of intact capsids through the NPC, followed by genome release, and (5) nuclear entry via virus-induced disruption of the nuclear envelope. Which mechanism a particular virus uses depends on the size and structure of the virus, as well as the cellular cues used by the virus to trigger capsid disassembly and genome release. This article is part of a Special Issue entitled: Regulation of Signaling and Cellular Fate through Modulation of Nuclear Protein Import.     

Cell lines from diamondback moth exhibiting differential susceptibility to baculovirus infection and expressing midgut genes

Abstract Six new cell lines were established from embryonic tissues of the diamondback moth, Plutella xylostella (L.). The cell lines showed differential characteristics, including growth in attachment or in suspension, susceptibility to a baculovirus infection and expression of genes involved in the glucosinolate detoxification pathway in R xylostella larvae. Five of the cell lines grew attached to the culture flask and one cell line grew unattached as a suspension cell line. The cell lines had population doubling times ranging from IS to 23 h. Among five of the P. xylostella cell lines examined for infection of a nucleopolyhe. drovirus from Autographa californica, AcMNPV four cell lines were highly susceptible to AcMNPV infection, but one was only semi-permissive to AcMNPV infection. The production of two recombinant proteins, a β-galactosidase of bacterial origin and a secreted alkaline phosphatase of eukaryotic origin, in the R xylostella cell lines was examined in comparison with that in the cell line Sf9 which is commonly used for recombinant protein production. In the P. xylostella cell lines, expression of three important midgut genes involved in the glucosinolate detoxification pathway, including the glucosinolate sulfatase genes GSS1 and GSS2 and the sulfatase modifying factor gene SUMF1、was detected. The R xylostella cell lines developed in this study could be useful in in vitro research systems for studying insec-virus interactions and complex molecular mechanisms in glucosinolate detoxification and insect-plant interactions.     

The compatibility of a nucleopolyhedrosis virus control with resistance management for Bacillus thuringiensis: co-infection and cross-resistance studies with the diamondback moth, Plutella xylostella

The use of genetically modified crops expressing Bacillus thuringiensis (Bt) toxins can lead to the reduction in application of broad-spectrum pesticides and an increased opportunity for supplementary biological control. Bt microbial sprays are also used by organic growers or as part of integrated pest management programs that rely on the use of natural enemies. In both applications the evolution of resistance to Bt toxins is a potential problem. Natural enemies (pathogens or insects) acting in combination with toxins can accelerate or decelerate the evolution of resistance to Bt. In the present study we investigated whether the use of a nucleopolyhedrovirus (AcMNPV) could potentially affect the evolution of resistance to the Bt toxin Cry1Ac in Plutella xylostella. At low toxin doses there was evidence for antagonistic interactions between AcMNPV and Cry1Ac resistant and susceptible insects. However, this antagonism was much stronger and more widespread for susceptible larvae; interactions were generally not distinguishable from additive for resistant larvae. Selection for resistance to Cry1Ac in two populations of P. xylostella with differing resistance mechanisms did not produce any correlated changes in resistance to AcMNPV. Stronger antagonistic interactions between Bt and AcMNPV on susceptible rather than resistant larvae can decrease the relative fitness between Bt-resistant and susceptible larvae. These interactions and the lack of cross-resistance between virus and toxin suggest that the use of NPV is compatible with resistance management to Bt products.     

杆状病毒基因Ac108的克隆和原核表达

目的:克隆和表达苜蓿丫纹夜蛾核多角体病毒(Autographa califorica multicapsid nucleopolyhedrovirus,AcMNPV)开放阅读框108(open reading frame,ORF108,Ac108)基因,为进一步研究其功能打下基础.方法:将Ac108基因克隆至原核表达载体pQE30,在大肠杆菌M15中表达AC108蛋白.以纯化的AC108蛋白作为抗原,免疫新西兰大白兔制备蛋白的多克隆抗体.用该抗体检测了该蛋白在病毒感染细胞中的表达.结果:实现了AC108蛋白的表达,获得了AC108蛋白的多克隆抗体,Western blot检测发现在AcMNPV感染的Sf-9细胞中有一条大小约为27kDa的杂交带,远大于预期的11kDa.结论:AC108蛋白可能以同源或异源聚合物形式在电场中迁移.