Interactive use of computer models in teaching population genetics

A technique using a computer with a graphical display unit to teach students the effects of genetic drift, selection and migration is described. Both diallelic and triallelic loci are discussed. The Fokker-Planck equation is used as the mathematical model of the genetic system, and its validity as an approximation in this context is demonstrated by an investigation into selection at the ABO locus. An appendix contains a derivation from the Fokker-Planck equation of the formula used in the paper for the gene frequency distribution at a multiallelic locus in equilibrium under selection and migration.     

Involvement of blood-group-B-active trisaccharides in Ca2+-dependent cell-cell adhesion in the Xenopus blastula

 Despite their wide distribution in various organisms, no physiological roles have been proposed for the human blood-group-ABO (ABH)-active trisaccharides. Here we show that monoclonal antibodies against human blood-group-B-active trisaccharides (B-substance) completely block the Ca²⁺-dependent cell-cell adhesion system of frog (Xenopus laevis) embryonic cells. Synthetic B-substance or B-active glycopeptides also disrupt the Ca²⁺ -dependent cell-cell adhesion. These results suggest that blood-group-B-active substances play a role in cell-cell adhesion. Blood-group-B-active substances were found as glycoproteins and as glycosphingolipids. In order to identify B-active glycoproteins active in cell-cell adhesion, we purified B-active membrane glycoproteins by two-dimensional electrophoresis and found that they are 45- to 58-kDa proteins with pI(s) ranging from 4.0 to 5.3. They are glycosylphosphatidyl inositol (GPI) anchored. Amino acid sequence analysis showed that the purified B-active GPI-anchored proteins are homologues of soluble Xenopus cortical granule lectins (CGL). The results suggest that the B-active membrane glycoproteins are GPI-anchored forms of the lectin and are directly involved in frog Ca ²⁺-dependent cell-cell adhesion. Received: 16 September 1997 / Accepted 19 November 1997     

Genetic variation in Arizona Mexican Americans: estimation and interpretation of admixture proportions

Mexican Americans are a numerous and fast growing ethnic population in the United States. Yet little is known about their genetic structure. Since they are a hybrid, it is of interest to identify their parental populations and to estimate the relative contributions of these groups. This information is relevant to historical, biomedical, and evolutionary concerns. New genetic typings on 730 Arizona Mexican Americans for the HLA-A, HLA-B, ABO, Rh, MNSs, Duffy, Kidd, and Kell loci are presented here and they are used to estimate ancestral contributions. We considered both a dihybrid model with Amerindians and Spaniards as proposed ancestors, and a trihybrid model with Amerindians, Spaniards, and Africans as proposed ancestors. A modified weighted least squares method that allows for linkage disequilibrium was used to estimate ancestral contributions for each model. The following admixture estimates were obtained: Amerindian, 0.29 +/- 0.04; Spaniard, 0.68 +/- 0.05; and African, 0.03 +/- 0.02. The interpretation of these results with respect to Amerindian and Spanish ancestry is straightforward. African ancestry is strongly supported by the presence of a marker of African descent, Fy, despite the fact that the standard error of the estimate is as large as the estimated admixture proportion. An evaluation of the sensitivity of these results to a number of variables is presented: 1) our choices of ancestral allele frequencies, 2) the possibility of selection at HLA and the blood groups, and 3) genetic drift in Mexican Americans.     

Gene differentiation at the ABO locus in twenty castes and twenty-two tribes of Andhra Pradesh, India

Using gene frequency data for the ABO locus so far available, gene differentiation and gene identity between 20 castes and 22 tribes of Andhra Pradesh were determined. The interpopulation gene diversity is 1.4 and 1.6% of total genic variation in castes and tribes, respectively. Difficulties in interpreting genetic diversity using just one genetic system is discussed.     

ABO blood groups in Chilean and Peruvian mummies. II. Results of agglutination-inhibition technique

ABO blood groups of Peruvian and Chilean mummies were determined with the agglutination-inhibition method. In Peru all ABO blood groups were found in the period from 3000 B.C. to 1400 A.D.; from this period to 1650 only A and O were seen. In Chile no B or AB was noted either in pre-Columbian or Colonial mummies. This confirms the archeological concept that the Chilean Indian was culturally as well as genetically different from the Peruvian Indian. Further studies using other genetic markers are in order, as well as changing certain preconceived notions on blood groups of American Indians.     

Blood group A/B-defined glycosyltransferase and A/B blood group antigens in human normal and malignant endometrium in relation to morphology,age and oestrogen levels

We have used monoclonal antibodies to study the expression and regulation of A/B antigens and A/B transferase in normal and malignant human endometrium by immunohistochemistry. Staining was evaluated against blood group status, morphology, age ad serum oestrogen levels. The expression of the antigens, in contrast tothe expression of the transferase, was related to the A subtype (A₁/A₂) and the ABH secretor status. Normal, non-secretory endometria and most well-differentiated endometrial carcinomas from ABH secretors expressed the antigens and the transferase, but showed a morphology-dependent variation in the expression and degree of coexpression. n contrast, most grade 2 and 3 carcinomas were found to lack both structures, whereas secretory endometrium had a high expression of the transferase but expressed the antigens on only a few cells. The transferase expression was correlated inversely with age and positively with the level of free oestradiol in serum. Our findings suggest that A/B antigenic expression in the endometrium may be regulated at different levels — at the A/B transferase level and at a precursor substrate lvel — and that both genetic and hormonal factors are probably involved in the regulatory process.     

ABO blood groups and fertility—with special reference to intrauterine selection due to materno-fetal incompatibility

The purpose of the present investigation was to study whether there is differential fertility between different mating types of ABO blood group system. Selective force which is operating through maternal-fetal incompatibility has been observed in the differential fertility between compatible and incompatible mating groups in the present sample of 183 families of Visakhapatnam town of Andhra Pradesh, India. The differences in the mean numbers of pregnancies as well as living children between the two major mating groups, compatible and incompatible are significant. The fertility rates of O fathers and O mothers were significantly higher than those in matings in which neither parents belongs to O. The selection is operating to reduce the gene ratio of A and to increase the gene ratios of O and B in this sample.     

ABO blood groups in a natural population of black-handed tamarins (Saguinus midas niger)

Eighty-one black-handed tamarins from the Tucurui region were tested for human type ABO blood groups by salivary inhibition tests. Eleven belonged to the A group, 45 to B, and 25 to AB. The serum samples were tested for the presence of agglutinins having specificities like those of humans. The ABO system appeared to be polymorphic, with three alleles occurring at the following frequencies: A = 0.26, B = 0.66, and O = 0.08. The observed distribution fitted the expected on the basis of Hardy-Weinberg equilibrium.     

Identification of Suspected ABO Subtypes by Genotyping Kits

The aim of study is to use erythrocyte ABO genotyping to assist serological typing in the identification of suspected ABO subtypes. Nine samples with discrepancies in ABO serological forward and reverse typing were subjected to ABO 6–7 exon sequencing, and their respective results were cisAB01O1, Bw12O2, Ael05B, Bel03O1, Ael05O1, B(A)04O1, B(A)02O1, and two cases of O1O2 weak antibody for the reverse typing test. The ABO genotyping and serological ABO forward and reverse typing were combined for subtype identification. In the results of ABO genotyping, cisAB and B(A)04 are only found B gene in genotyping, thus the presence of A subtype B was excluded. The samples with a weak antibody for serological O type in reverse typing were tested ABO genotyping to exclude subtype A or B. We summarized a combination of ABO genotyping and serological typing can be used for identification of suspected ABO blood groups.     

Consistency of ABO blood group phenotypes and genotypes in renal transplant patients

The aim of this study was to confirm the concordance between the ABO phenotype and genotype in 34 patients undergoing renal transplant before 2010 in Sir Run Run Shaw Hospital. The ABO genotyping kit and column agglutination test (CAT) were used to examine the ABO type, and ABO subgroup was checked by sequence analysis of ABO exons 6 and 7. We found that the genotypes of serological A, AB, O, and B patients were A1A1 in 3 patients and A1O1 in 5 patients, A1B, O1O2 in 1 patient and O1O1 in 11 patients, and BB in 6 patients and BO1 in 6 patients, respectively. However, one patient, who was originally reported as serological B in the 2010 medical record and CAT showed Asub B in 2016 and sequence analysis of ABO exons 6 and 7 demonstrated B(A)04/O1.[not clear] The ABO column agglutination testing combined with genotyping may provide additional value in pre-renal transplantation laboratory examinations, and it may be safe to transplant a B/O1 kidney to a B(A)04/O1 recipient since the transplantation has been success for 6 years.